TCONS_00065240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065240
Unique NameTCONS_00065240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065240 ID=TCONS_00065240|Name=TCONS_00065240|organism=Clytia hemisphaerica|type=transcript|length=564bp
ggaaaatttttaacatctggaaggtttagattacggaattttgcaagaca
gTTTGAAGAATTTTGCGgtgggaggtctggtaacccagccctcgtctTCG
GGAATTGGGTCCAgccgaaatatttttaggtttacgGGCAAGGGTTGTTG
AACTCAACTTGGGATGCTGCACATCTATGGCCTATCATTCCTCTTCGATG
GGAAATTGGtgcgctcctttagagctttagcgtgggcggccgccaatccg
ccattgGGATATCAGATAACTAATACCGATGCACCGACAAACACGCACTC
CTCATGAATGTTTAGAAGCTGTGGTTGTAATTTTAAAGGAGCCCTTGATG
TTTGCATAAATAAAAATCCGTTATTAAACAAAGCGCAGTCTCAGAAATAT
TTTAGCCAAACATAAGCTAcgcatttcaaaaaaatattttgctatctATA
CATTATATATACAATCTGGaaaagttttaaagttttaattttttgacgtc
aatttttcattttcctgcAATAGAAAAATTGTactatttcttaaaatact
tgCAGTTCTCTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_433:183543..184106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065240 ID=TCONS_00065240|Name=TCONS_00065240|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_433:183543..184106 (Clytia hemisphaerica)
TTGAGAGAACTGcaagtattttaagaaatagtACAATTTTTCTATTgcag
gaaaatgaaaaattgacgtcaaaaaattaaaactttaaaacttttCCAGA
TTGTATATATAATGTATagatagcaaaatatttttttgaaatgcgTAGCT
TATGTTTGGCTAAAATATTTCTGAGACTGCGCTTTGTTTAATAACGGATT
TTTATTTATGCAAACATCAAGGGCTCCTTTAAAATTACAACCACAGCTTC
TAAACATTCATGAGGAGTGCGTGTTTGTCGGTGCATCGGTATTAGTTATC
TGATATCCcaatggcggattggcggccgcccacgctaaagctctaaagga
gcgcaCCAATTTCCCATCGAAGAGGAATGATAGGCCATAGATGTGCAGCA
TCCCAAGTTGAGTTCAACAACCCTTGCCcgtaaacctaaaaatatttcgg
cTGGACCCAATTCCCGAagacgagggctgggttaccagacctcccacCGC
AAAATTCTTCAAActgtcttgcaaaattccgtaatctaaaccttccagat
gttaaaaattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040901XLOC_040901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065240-exon-scaffold_433-1491911889:183543..184106TCONS_00065240-exon-scaffold_433-1491911889:183543..184106Clytia hemisphaericaexon
TCONS_00065240-exon-scaffold_433-1510915933:183543..184106TCONS_00065240-exon-scaffold_433-1510915933:183543..184106Clytia hemisphaericaexon
TCONS_00065240-exon-scaffold_433-1575043694:183543..184106TCONS_00065240-exon-scaffold_433-1575043694:183543..184106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:183543..184106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.392397	0	0.700097	1.15279	2.39934	1.42736	1.93501	1.6149	0.615792	0.779483	0.173374	0.910291	4.71564	4.40301	0.215352	0.328852	0.454186	0.41438	10.9245	6.72698	2.37073	2.70409	0.656005	0.663443	1.01983	2.35341	0.528433	0.234218	0.273749	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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