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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065238 ID=TCONS_00065238|Name=TCONS_00065238|organism=Clytia hemisphaerica|type=transcript|length=947bp
CGGTCtaattgagttttaaaacttGTATTTCTGTTCCAATAACATGCCTT
GAAATCAAACATTTCGTTAAATTCAACTTCACTACTAGGCATAGTTGAAA
CACTGGTGTACATTCTTGTTGCAAAGACGTTTTTTTAGACAAAAAGGCAG
GACACTTTTCAGAGATCTTCCGAAGTTTAAACCTTTTTAGTGTCTATGAT
TAGCTGAGGAACCAAACTTAGCTTCATTTCGTAATTTCATGGATATCATA
ATCTTCACAATACTGTCTTGTCCGCTTGTGAAATCTACAGACCCGAATCA
CAGCTCCATTTGTGGTCATCATCCAGTTACAAGGGTACAAACATTCTGGT
ATTCTAATGGTCAGTAAATTAGATCTTTGTCTTGACATTGGAAAATTTAG
TCTTGAAATTTGATTACagatttctttatatttttggtGGTCACAATGTC
GGGCGATAACGAAACAAAATTCCTTCTGGTGATGTTTGTCTTGGAAACCG
TGGACACATTTGTGAGCAATGTTCAAATATCTTTCGTCATAGTTTGTGGG
TGCGGCTTCTTTTTTCTTGTGGAAATCCTTCCATAGCACGTTCAAGGATA
ANCTTCATATATCTTTCGTCATAGCTTGTGGGTGCGGCTTCTTTTTTCTT
GTAGATATCCTTCCATAGCACGTTCAAGGATAATCCGACCATATTATGTT
TGTTTTTCCATTCTGTAGCCAATTGGCGTTGAATGAAACCAGTTGTTTTT
ATTGGCTTCTGACTCTTCCACGGATTTATTGGACCCAAATAACGTCCATT
TTGTATCGATATATCTGGCTTTAATTTTATCCTCAAAGTATTGGCTGTGG
CAATTTTAGTTTCgtaaaatatcaagaaataaaCACATATTAAGTTTCCT
TGAAGCTGCATCATAAGCGAATATTAATAAAACTCGTAACAAATCTG Run BLAST on NCBI protein sequence of TCONS_00065238-protein >TCONS_00065238-protein ID=TCONS_00065238-protein|Name=TCONS_00065238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MMQLQGNLICVYFLIFYETKIATANTLRIKLKPDISIQNGRYLGPINPWK
SQKPIKTTGFIQRQLATEWKNKHNMVGLSLNVLWKDIYKKKEAAPTSYDE
RYMKXILERAMEGFPQEKRSRTHKL Run BLAST on NCBI transcript from alignment at scaffold_433:90550..91496 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065238 ID=TCONS_00065238|Name=TCONS_00065238|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at scaffold_433:90550..91496 (Clytia hemisphaerica)
CAGATTTGTTACGAGTTTTATTAATATTCGCTTATGATGCAGCTTCAAGG
AAACTTAATATGTGtttatttcttgatattttacGAAACTAAAATTGCCA
CAGCCAATACTTTGAGGATAAAATTAAAGCCAGATATATCGATACAAAAT
GGACGTTATTTGGGTCCAATAAATCCGTGGAAGAGTCAGAAGCCAATAAA
AACAACTGGTTTCATTCAACGCCAATTGGCTACAGAATGGAAAAACAAAC
ATAATATGGTCGGATTATCCTTGAACGTGCTATGGAAGGATATCTACAAG
AAAAAAGAAGCCGCACCCACAAGCTATGACGAAAGATATATGAAGNTTAT
CCTTGAACGTGCTATGGAAGGATTTCCACAAGAAAAAAGAAGCCGCACCC
ACAAACTATGACGAAAGATATTTGAACATTGCTCACAAATGTGTCCACGG
TTTCCAAGACAAACATCACCAGAAGGAATTTTGTTTCGTTATCGCCCGAC
ATTGTGACCaccaaaaatataaagaaatctGTAATCAAATTTCAAGACTA
AATTTTCCAATGTCAAGACAAAGATCTAATTTACTGACCATTAGAATACC
AGAATGTTTGTACCCTTGTAACTGGATGATGACCACAAATGGAGCTGTGA
TTCGGGTCTGTAGATTTCACAAGCGGACAAGACAGTATTGTGAAGATTAT
GATATCCATGAAATTACGAAATGAAGCTAAGTTTGGTTCCTCAGCTAATC
ATAGACACTAAAAAGGTTTAAACTTCGGAAGATCTCTGAAAAGTGTCCTG
CCTTTTTGTCTAAAAAAACGTCTTTGCAACAAGAATGTACACCAGTGTTT
CAACTATGCCTAGTAGTGAAGTTGAATTTAACGAAATGTTTGATTTCAAG
GCATGTTATTGGAACAGAAATACaagttttaaaactcaattaGACCG Coding sequence (CDS) from alignment at scaffold_433:90550..91496 >TCONS_00065238 ID=TCONS_00065238|Name=TCONS_00065238|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_433:90550..91496 (Clytia hemisphaerica)
ATGATGCAGCTTCAAGGAAACTTAATATGTGtttatttcttgatatttta
cGAAACTAAAATTGCCACAGCCAATACTTTGAGGATAAAATTAAAGCCAG
ATATATCGATACAAAATGGACGTTATTTGGGTCCAATAAATCCGTGGAAG
AGTCAGAAGCCAATAAAAACAACTGGTTTCATTCAACGCCAATTGGCTAC
AGAATGGAAAAACAAACATAATATGGTCGGATTATCCTTGAACGTGCTAT
GGAAGGATATCTACAAGAAAAAAGAAGCCGCACCCACAAGCTATGACGAA
AGATATATGAAGNTTATCCTTGAACGTGCTATGGAAGGATTTCCACAAGA
AAAAAGAAGCCGCACCCACAAACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065238-exon-scaffold_433-1491911889:90550..91496 | TCONS_00065238-exon-scaffold_433-1491911889:90550..91496 | Clytia hemisphaerica | exon |
| TCONS_00065238-exon-scaffold_433-1510915933:90550..91496 | TCONS_00065238-exon-scaffold_433-1510915933:90550..91496 | Clytia hemisphaerica | exon |
| TCONS_00065238-exon-scaffold_433-1575043694:90550..91496 | TCONS_00065238-exon-scaffold_433-1575043694:90550..91496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:90550..91496 . |
Blast
The following BLAST results are available for this feature:
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