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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065236 ID=TCONS_00065236|Name=TCONS_00065236|organism=Clytia hemisphaerica|type=transcript|length=926bp
CGCGGAttctaaaattagttccctaaAGGTGTTGAAGTTCTCAATACATC
ACAATATTTTGACTGACAAGAAGCCTGATAATGTTCTCAGAATTTGTCTT
CATCTTAAACGGGAAATCTGccgttttcaaaaaaacttcgttGAATATCC
GACCAATCTTTCATAACAGATAATACACTCTCAACGCTTGCATCTGATTC
ACCAAATCCATTGTTTTCCAGAAAACCTCTTCACCGTAATAAAGTTCTCT
CGATATTCGAATCTCAATGTGCTTCCAGTACTTAAACTCTCCATTGTTCG
AAAAATCAATCACTTCTAAATTTAGTTCTCGCATGCTTTTACGAAATTGT
TTACGCCTTTGATTACGAGGGGATAAAGTGGTCGTATCGTGGTTTTTCGA
TAAAGTATCGATATCTATTGACATTAAATCATGGTAAATTTCCACCAAAC
GATGTTTATTTGCAATCGATATTGAAGCTTCGTAAAGAGCATGTTCGACT
aaatattcaaaacatttgaaatattCAATGTTATAAACGTTCAAAAGTTT
ATACTCTAAATCTTCATACTGAAAAACAACATTAAAATGCTTTGTCGGTT
GTAGCGATAGAGGATTGCCGTTCTTGTCTGCGAGTGTTGGCTCTTTAAAT
TTGTCTGTCATTAtgcaaaaaacctttttaaaacaTTCAAGATCTTCAAA
TTATGATATTGAAAACAAACCAGCTCTCATCTAACTTGGATAATAATTTT
GAGAAAAccagaaatgaaatgaaaccaATTTTTCCATCGATTAGCTTTGC
AAAGTTTTCAATCCCATGAGTTTCAATGACACAATAGGCACTTATTCCGA
CTTGTAAATAATGCGGTCATGGGTTCTTTTGAGATTGGCTTTGCTTCGAG
TAGTATCACGTCGTAGTACCACTAGC Run BLAST on NCBI protein sequence of TCONS_00065236-protein >TCONS_00065236-protein ID=TCONS_00065236-protein|Name=TCONS_00065236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MTDKFKEPTLADKNGNPLSLQPTKHFNVVFQYEDLEYKLLNVYNIEYFKC
FEYLVEHALYEASISIANKHRLVEIYHDLMSIDIDTLSKNHDTTTLSPRN
QRRKQFRKSMRELNLEVIDFSNNGEFKYWKHIEIRISRELYYGEEVFWKT
MDLVNQMQALRVYYLL Run BLAST on NCBI transcript from alignment at scaffold_433:84718..85643 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065236 ID=TCONS_00065236|Name=TCONS_00065236|organism=Clytia hemisphaerica|type=transcript|length=926bp|location=Sequence derived from alignment at scaffold_433:84718..85643 (Clytia hemisphaerica)
GCTAGTGGTACTACGACGTGATACTACTCGAAGCAAAGCCAATCTCAAAA
GAACCCATGACCGCATTATTTACAAGTCGGAATAAGTGCCTATTGTGTCA
TTGAAACTCATGGGATTGAAAACTTTGCAAAGCTAATCGATGGAAAAATt
ggtttcatttcatttctggTTTTCTCAAAATTATTATCCAAGTTAGATGA
GAGCTGGTTTGTTTTCAATATCATAATTTGAAGATCTTGAAtgttttaaa
aaggttttttgcaTAATGACAGACAAATTTAAAGAGCCAACACTCGCAGA
CAAGAACGGCAATCCTCTATCGCTACAACCGACAAAGCATTTTAATGTTG
TTTTTCAGTATGAAGATTTAGAGTATAAACTTTTGAACGTTTATAACATT
GaatatttcaaatgttttgaatatttAGTCGAACATGCTCTTTACGAAGC
TTCAATATCGATTGCAAATAAACATCGTTTGGTGGAAATTTACCATGATT
TAATGTCAATAGATATCGATACTTTATCGAAAAACCACGATACGACCACT
TTATCCCCTCGTAATCAAAGGCGTAAACAATTTCGTAAAAGCATGCGAGA
ACTAAATTTAGAAGTGATTGATTTTTCGAACAATGGAGAGTTTAAGTACT
GGAAGCACATTGAGATTCGAATATCGAGAGAACTTTATTACGGTGAAGAG
GTTTTCTGGAAAACAATGGATTTGGTGAATCAGATGCAAGCGTTGAGAGT
GTATTATCTGTTATGAAAGATTGGTCGGATATTCaacgaagtttttttga
aaacggCAGATTTCCCGTTTAAGATGAAGACAAATTCTGAGAACATTATC
AGGCTTCTTGTCAGTCAAAATATTGTGATGTATTGAGAACTTCAACACCT
ttagggaactaattttagaaTCCGCG Coding sequence (CDS) from alignment at scaffold_433:84718..85643 >TCONS_00065236 ID=TCONS_00065236|Name=TCONS_00065236|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_433:84718..85643 (Clytia hemisphaerica)
ATGACAGACAAATTTAAAGAGCCAACACTCGCAGACAAGAACGGCAATCC
TCTATCGCTACAACCGACAAAGCATTTTAATGTTGTTTTTCAGTATGAAG
ATTTAGAGTATAAACTTTTGAACGTTTATAACATTGaatatttcaaatgt
tttgaatatttAGTCGAACATGCTCTTTACGAAGCTTCAATATCGATTGC
AAATAAACATCGTTTGGTGGAAATTTACCATGATTTAATGTCAATAGATA
TCGATACTTTATCGAAAAACCACGATACGACCACTTTATCCCCTCGTAAT
CAAAGGCGTAAACAATTTCGTAAAAGCATGCGAGAACTAAATTTAGAAGT
GATTGATTTTTCGAACAATGGAGAGTTTAAGTACTGGAAGCACATTGAGA
TTCGAATATCGAGAGAACTTTATTACGGTGAAGAGGTTTTCTGGAAAACA
ATGGATTTGGTGAATCAGATGCAAGCGTTGAGAGTGTATTATCTGTTATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065236-exon-scaffold_433-1491911889:84718..85643 | TCONS_00065236-exon-scaffold_433-1491911889:84718..85643 | Clytia hemisphaerica | exon |
| TCONS_00065236-exon-scaffold_433-1510915933:84718..85643 | TCONS_00065236-exon-scaffold_433-1510915933:84718..85643 | Clytia hemisphaerica | exon |
| TCONS_00065236-exon-scaffold_433-1575043694:84718..85643 | TCONS_00065236-exon-scaffold_433-1575043694:84718..85643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:84718..85643 . |
Blast
The following BLAST results are available for this feature:
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