TCONS_00065235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065235
Unique NameTCONS_00065235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065235 ID=TCONS_00065235|Name=TCONS_00065235|organism=Clytia hemisphaerica|type=transcript|length=306bp
CGATTGTGCGGATACAACTTCTCTTGGTAGTTTATCCCACGTTGGCACAC
ATCTATAATAAAACGATTTAGTTTGGGGTCCATTGAagccgtcattagca
aagtttgGTAAAAGCTCTTTGGAATGTCTTCGTTTAGGACGTGCACGGCT
GATTAATTTTGAAGGTTATAGTATCTTTGTCGTAAAAGGAAAGATGTTTA
TAAACCTGCACCATATCACAAAACTGTCTCCGAAATTCGAGGGTTGGTAA
TCCAAGCCTTTTTAGCCTTTCACTGTACGGGAGGTGTCGATATATTGGGA
TAAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_433:46423..46728

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065235 ID=TCONS_00065235|Name=TCONS_00065235|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_433:46423..46728 (Clytia hemisphaerica)
AACTTATCCCAATATATCGACACCTCCCGTACAGTGAAAGGCTAAAAAGG
CTTGGATTACCAACCCTCGAATTTCGGAGACAGTTTTGTGATATGGTGCA
GGTTTATAAACATCTTTCCTTTTACGACAAAGATACTATAACCTTCAAAA
TTAATCAGCCGTGCACGTCCTAAACGAAGACATTCCAAAGAGCTTTTACc
aaactttgctaatgacggctTCAATGGACCCCAAACTAAATCGTTTTATT
ATAGATGTGTGCCAACGTGGGATAAACTACCAAGAGAAGTTGTATCCGCA
CAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040896XLOC_040896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065235-exon-scaffold_433-1491911889:46423..46728TCONS_00065235-exon-scaffold_433-1491911889:46423..46728Clytia hemisphaericaexon
TCONS_00065235-exon-scaffold_433-1510915933:46423..46728TCONS_00065235-exon-scaffold_433-1510915933:46423..46728Clytia hemisphaericaexon
TCONS_00065235-exon-scaffold_433-1575043694:46423..46728TCONS_00065235-exon-scaffold_433-1575043694:46423..46728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:46423..46728 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19297	3.20773	4.13831	6.06025	2.95734	2.72642	6.57861	12.3176	4.00394	4.57802	0.74059	4.38151	3.6385	2.97244	3.73025	3.55695	4.39	4.78084	1.16559	2.03284	6.36085	4.1368	2.09534	3.42895	0	2.10133	4.00932	8.55772	8.51908	2.06657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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