TCONS_00065233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065233
Unique NameTCONS_00065233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065233 ID=TCONS_00065233|Name=TCONS_00065233|organism=Clytia hemisphaerica|type=transcript|length=545bp
CAAGGATGGACTGAGAACGACAACTCACAAGCGTTTATCTCACAAACTTG
AACCCACCATTGGAGAAAAGAGAGATTCAAAAAATGTCGACCAAAATGGC
CAAGGCAAGCAAAGGTTTTATTGGCTTGCTATTCACACGCAACCGAGCGT
ATAATAGATTGTAAATCTATCAGATTCACTCTAGGTAGTCGGCTTCCGAA
TGTTACATCACGATTGGAGAAAGAAGAATGGATATTTTCCGACTAAAGAA
TTGTCCACccttccacccaggacattcttattccaacccaaCCCAACCCA
ACGCTTCGtattaaattttggaaaaaatgtttttgtaaatCCTTCTCTTG
CCCTAGTTCTTCCATATTTATTAGCctggttttttgaatttttccaccca
ggacgatttttattccaacccccttcTCATTAGATTTTTTAGATTATTCC
ATCCTACTgtttattccaaacccccttCAATTATGTACCCGAGAGTACTg
acaaaaatatctaaaaagcttttactttacgagatagtgaaaaGG
Run BLAST on NCBI

transcript from alignment at scaffold_433:23508..24052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065233 ID=TCONS_00065233|Name=TCONS_00065233|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_433:23508..24052 (Clytia hemisphaerica)
CCttttcactatctcgtaaagtaaaagctttttagatatttttgtcAGTA
CTCTCGGGTACATAATTGaagggggtttggaataaacAGTAGGATGGAAT
AATCTAAAAAATCTAATGAgaagggggttggaataaaaatcgtcctgggt
ggaaaaattcaaaaaaccagGCTAATAAATATGGAAGAACTAGGGCAAGA
GAAGGatttacaaaaacattttttccaaaatttaataCGAAGCGTTGGGT
TGGGttgggttggaataagaatgtcctgggtggaaggGTGGACAATTCTT
TAGTCGGAAAATATCCATTCTTCTTTCTCCAATCGTGATGTAACATTCGG
AAGCCGACTACCTAGAGTGAATCTGATAGATTTACAATCTATTATACGCT
CGGTTGCGTGTGAATAGCAAGCCAATAAAACCTTTGCTTGCCTTGGCCAT
TTTGGTCGACATTTTTTGAATCTCTCTTTTCTCCAATGGTGGGTTCAAGT
TTGTGAGATAAACGCTTGTGAGTTGTCGTTCTCAGTCCATCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040894XLOC_040894Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065233-exon-scaffold_433-1491911889:23508..24052TCONS_00065233-exon-scaffold_433-1491911889:23508..24052Clytia hemisphaericaexon
TCONS_00065233-exon-scaffold_433-1510915933:23508..24052TCONS_00065233-exon-scaffold_433-1510915933:23508..24052Clytia hemisphaericaexon
TCONS_00065233-exon-scaffold_433-1575043694:23508..24052TCONS_00065233-exon-scaffold_433-1575043694:23508..24052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:23508..24052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.411862	0.239105	0.116964	0.142392	0	0.407252	0.254176	0.0889774	0.110213	0	0	0	0.0729279	0.17987	0.0643427	0	0.081244	0	0	0	0	0	0.110066	0	0	0	0.154516	0.117195	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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