TCONS_00065228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065228
Unique NameTCONS_00065228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065228 ID=TCONS_00065228|Name=TCONS_00065228|organism=Clytia hemisphaerica|type=transcript|length=1571bp
attataataacattacccccgtcttttgccagtttggtataatatgttat
gaattgcgtgattttgctgtgcgaCGATAGCTCAAGTGGTAAGGCGTCCG
GTTTGGagaccaaggttgcttgcatttggtggttcgaaccgAGGTGTGGG
AGTATAGTTTCAGTATTAgcaaaatagcatcaaatagtcaaattcagaaa
aaactaagtccagaaatcagaaaaaacagagttagagataggaaatagag
aaaaagaggAGAAGGGCGGAATTGGTGATNAACTGTTAGCGTGCAAGCCA
AGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAGGAAATTGAAGT
ACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACAGGTTGCAACAA
AGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAAAACCTCCCACC
TATTTGCAACATGTAGAACCCCCTCAAAtGAGCTGTCCAAATTAGCAGAA
GAGAATTCTAATCTACACATTTTGCATGTTGAAGTAACAAAGGATGATGA
CATCTTTGCAGCTGCTGAACAAGTATCACATTTTGTGGAAGATGGCGGTT
TACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATGAACATGCAAAG
ATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTACCATATAAACGC
TGTTGGTCCTGCCATGATGGTTAAGGCATTCTTACCACTTTTAAGACAAG
CTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTGGCGTATTGAATATT
AGCTCCAGAACTGGATCGATTGAAGATAATGGTATGGGCAAGCTGTATGG
CTCAAGGCTATCCAAAgtAGCTTTAAACATGCTCACAAAAAACCTAAGCA
TAGAGTTGAAAGCAGACAATCTCATAGCTGTGGCTTTGAATCCTGGATGG
GTCAAGACAGAAAATGGTGGGGAGAATGCGCTGATAACAGCGGAACAAAG
TGTACATGGCATGCTCAGTGTTTATAAGGGCTTAACAATGAAAGATTCAG
GTGCTTTCCTGAGCTATGATGGTTCAACAATACCTTGGTGatgcaacaaa
atttttttattatttttcaatgtaCATTTTTAAGTAATGTTTTTCTACAC
ATATGCACTACACTATCTGATGATAAAATAGGACGTTCTCAAATGATTGG
ATGACATAAATAGAGTACTGCAGGCTATCCTCGAATGCCCCCATATATAC
TACATCCCCCTATATAATATACACCTACCAAACCCGCACTATTTAAATTA
GCGGTCTGTCAAcctttttttaaccattttccaGCCATTTTCCATTATCA
GATATGATGTTTTACAGATTTGGTAATCCTGAGGAAACTGGATTACACAC
TATTTTGAAAATAGCGCAACTACTCTTAAGTGCCAAATAAATGGCCCCCC
CCgtttaataatttttaaaaatatttttagctgtCAAATAGAAggccctt
attttgctctaaatagcctgattttagcctatatttaccttattttgggg
ttttcagaagtacaatttcca
Run BLAST on NCBI

transcript from alignment at scaffold_433:516819..523470-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065228 ID=TCONS_00065228|Name=TCONS_00065228|organism=Clytia hemisphaerica|type=transcript|length=6652bp|location=Sequence derived from alignment at scaffold_433:516819..523470- (Clytia hemisphaerica)
ATTATAATAACATTACCCCCGTCTTTTGCCAGTTTGGTATAATATGTTAT
GAATTGCGTGATTTTGCTGTGCGACGATAGCTCAAGTGGTAAGGCGTCCG
GTTTGGAGACCAAGGTTGCTTGCATTTGGTGGTTCGAACCGAGGTGTGGG
AGTATAGTTTCAGTATTAGCAAAATAGCATCAAATAGTCAAATTCAGAAA
AAACTAAGTCCAGAAATCAGAAAAAACAGAGTTAGAGATAGGAAATAGAG
AAAAAGAGGAGAAGGGCGGAATTGGTGATNAACTGTTAGCGTGCAAGCCA
AGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAGGAAATTGAAGT
ACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACAGGTTGCAACAA
AGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAAAACCTCCCACC
TATTTGCAACATGTAGAACCCCCTCAAATGTAAGCTTTTTCACATTTTTG
TTTGACCTTGACACTTTTATTTGACTTGTCAGATTTTAGATGTATAACAA
TAGGGTGTCTCCACAAGGGTCTATGGGCATCAGCAGAAACAACTATATTT
GTTTGTGTTCGATTGCATTTGAATAACGTTTTATTGGTTCATAGACCTTT
TCGCCGACGACCCACGCCACGGCATGGCCCGTCGCCCGAACATGTTCGGT
CCTGTTCGGACCATGCTCGGGCCACAAAAAATTATTATTGAATCGGCCCA
AACATTTTGTTCGGACCATGTCCATAGGAATAGTAGAATAGTAGAATTTA
ATTTTATTTACCTTTCCTGGTTTATCATCATCCATTGTTAAATATTTTCA
TTAGATTATTAGACAAATTCAAAGTTCCAAATACCAGTTTGATTCACAAA
GCTGTATAACAGTACAAAAAAAAATTCCAGAAAAATTCTGCTTCGAATAG
GAGAAGACCACGAGAAAAGGGAACGGGATAAAGAATAAAAAGAACACCAT
ATATTATGTAAGATTCAAATCATTCTTTTTAATAATTTTCCTAACTTAAT
TGGAAAAAAGATGATTAACTTTTATATTTGAACAATATATATTTGAATAA
AGATGAAGATTTTTAAATTTGTTTGCTAAAATAATGAATTTAAAATATAA
ATATTGGGTCCTGAAATTACATGCGGCAAGTTTTCGAAAATCTGGCCCGA
ACATGGTCCGAAACTGCGCCATTTAAAAAAAGTATTAATCAAGAGGCCCG
AACATGTTCGGGCCATGCCGTGGGTCGTTTTCGCCTCCCTTCCATCCGCC
ATATTCCAGACATAATTAATCAAACACAGTTCGATTATAATCGAACAATC
GAACTTTGTCGAACTTAATCGAACGACAAAAGTTGCTAAAATTGTGAGTA
TTCGATTAAGTTCGACAAAACATATTAAGTTTGACAAAGTTTGACAACGA
GAAATGTTTGAAAAATTTGACAAAAAACTCCGTTCGATAAAGTTCAACAA
CAAGGAAAGGTTCGACAAATTCGACAAAAAACTCCGTTCGAAAAAGTTCG
ACAACACAAAATGACCAAGTTCTTCAAAGTGTTGTCAAAAGCTGGCAAAA
ATTACGAAAAATGACCTCCTTTGGGTACCAGCCCCGGTGGGACCAATCTA
GGCCTCTACAGCCCCCCACAGCCCTTCGGACCGCTTTGGATACCCTCTGC
CTTGCTTTCCCTCAAAGCCAGCACCATCCATCAGTCATCCGAAGCCCTTA
AAAGGCTTGGAAAGGCGGAAAGGCTTGAAATTGGTCAAAATTGGAAAAAA
AATGACCTCCTTTGGGTACCACTGCGGACGGCCCCTGGGGGTCCTGGCCG
GTGTGCCGGGGGGTCTGATCGGTGCTCAGTGGTCAGGGGGGTGTAAGCGA
ACACGCCTGCCCCGTTGGGGGTCCTTCAAAATTCCTCAAAGTGCCATCAA
AAGCCGGCAAAAGTTGTCAATAATGACCTCCTCAATTGAGGCTGCTACAC
CCCTTTCTCACCAGGAAAAATCGATGGTGAGACCAATTGAGGCCTCTACA
GCCCTCCATAGCCCCTGTATTTTTGCATACATCAAGATAACGGATGGAAA
TGCGAAAAGGTCTATTGATTTCAAATAGCTTTACTTTCAATCGATCTTCT
ATTATGTTGGATTAGTATGATTACGATTATGTTTGATAAGTTTGATTGCA
ATTTAATTGGCCCACTCCTTTCTTTATACATAGAGCTTTAGCGTGGGTGG
CCATGGGAAAATTAAATAAGAGTGACTGCATAAGTACCTTACAAGAAAGG
CCATATATATTTTAGAAGGGCACTTTTTCCAGTGTTTTTCCATTAAAAAG
GCTGTTTTTACCAATATTTTAGTAATTTCAAGAGGGGCAAGGTACGATAA
CTGGACCCTTATAGGGCATGAAAAATGACCTGCATCAGTAAATAAATCAA
ATGAATGTAATCAAACATAATCGAATACAATCAAACGTAACTGAAGCAAT
TGAATGGCAAATCCTGTGTAATATTCAATTACGACATTCGACAATTCAAT
CACAATTATTCAACTGCATTTGATTGTGTTCAATTGATTAGGTATTCGAT
TAATTTGATTGACACCGTCTGGCCATGGCAACAACAATGATGATAGCGAC
TTCAGAATTCACACAGCTTTTGTTGATGCCAAACCAAATGTTTCATTTTT
TTGTGAATTTTGAACCCTTCTAACTTTTCTCTACCGTCAACTGCTCTAAC
TTGGGACGATTGGTCGAAACATACCGGGTGTCTGTGAAAATACTTCCCCC
TGTTTGATTCAATATTGCGAAAAAGTGAAAAAATATATTAGCTTTATTTT
TTCTAAATCGTTTAGAGGAGGGTTTAACTTAAATTTTGGTATATCAAACT
TTAACATTGCTTCATTAGATCAAAAGTTATGACAAAAAGAGTAAAAAAAT
TGTTGTCAAAAAGAGCACAAAAAGACGAAAAAACAAGGTATCAATTTACT
TTTGATCTTCNGATAACTTTCACTGATAGTGCGCCGTTTTTAATTTTTTT
TATTCAAAATGACCGGATGCCGATTGAAGAAATAGAGAAAAAAGTTGCAA
TCATTGATGAACAATTATGTATGTCTCTGGAAATGGTTGAAAACATAGTT
GCAGGTTGAAACTTTGTATGTTTATCAGAAAGGAATTTAATAAGAACTTT
AACACTATTACATTATTAAAATTTATTGTTCAAGGAGCTGTCCAAATTAG
CAGAAGAGAATTCTAATCTACACATTTTGCATGTTGGTAAGAATATTGTA
AGTTTTCTCACTATATTTATAAAATAATGTAGAATTAAAAAACTCTGGAG
AAGATTTTCAACCAAAATTATAGAAAACAGTGGTGTCTTATCATTTCATG
GACAAGTTCTATTGAGTTTATTAAACTTAAAAGTACCTAGAAGGGAATCT
TTTGGATGGAAAACTAAGCAACTAATGTCACAGGTTGGTTACCCAATTGT
AGTTTTCACTCGAGAACAATGAAAAGAAACAATAGATTCAAAAGTTTACC
ACGTGGTAGCAAAATTTGAAGAAGGGAATCTTTTGGATGGAAAACTAAGC
AACTAATGTTACAGGTTGGTTACCCAATTGTGGTTTTCACTCGAGAACAA
TGAAAAGAACCAATAGATTCGAAAGTGTTTACCACATGGTAGCAAAATAG
AGTGCACTCTTTAAGCAAATGGACTACGTAAACATTTTCGAGCTTATCTA
CAATAGTGTGGTGGTTCCCCTTAATTTGAATAGCATTGCCATCAAGGCAG
AAGATCCAATCTCAAAATAAGTACATGAGAAAACTTCTTTTACTTTGCTA
GCTTGAAATTTGAGTTTGTCCCCCTTTTTTCTCTTGATCCTACCCAACTA
AAAGAAAAAGGCCAGAATCTCAGAATTTTAAGTTAGGAAAGCAAAAAAAG
TCTCAGTTATCTCAACACTAATTTTGAGATTGGATCCTCTGCCTCGATAG
CAGTGATAGATGGATCCATTTTGATTTCATAGAAGTAACAAAGGATGATG
ACATCTTTGCAGCTAAAGAACAAGTATCACATTTTGTGGAAGATGGCGGT
TTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATGAACATGCAAA
GATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTACCATATAAACG
CTGTTGGTCCTGCCATGATGGTTAAGGTAGACAATTTCTCTCATGCCTTG
TCAGGGAGTCAAGAAAGTCTGGATAATAATTTCTTTTTGTCTTCATTTTA
CAGTTCCTTGGTTGATTCTAGTTTTAACAAAACCCTGATTATAGCTTTCT
ATTTTCAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTCTTCT
TCAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTGGATC
GATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCCAAAG
TAAGCGCGATATTCTAAATAGAACATTTAGCATAATTTTAATAATATTTA
CGACTTCAGGTGAGCTTTCACGATGCTCAATGGAAACTGGTAGTTACCAT
GCCCTTGTGCTTTTTTTCAGACGTGCCGATTTTTGAATAAACGTATCGTC
TCATTTATATTCTTTTATATCATTTATTTTCCAGGGAGAAAGAAGATAAC
GAACTAGCTAACTAGCTATATTTTGTTTAAGATTTGTTCTTGTTTTCTAT
AAAAAAAATTTATTTTGTTTTGAAAAGAATTCGAATGTCANTTCAACACT
AATTTTGAGATTGGATCCTCTGCCTCGATAGCAGCGATAGATGGATCCAT
TTTGATTTCATAGAAGTAACAAAGGATGATGACATCTTTGCAGCTGCTGA
ACAAGTATCACATTTTGTGGAAGATGGCGGTTTACATTGTCTCATTAACA
ATGCTGGTGTTGTGAATTATGAACATGCAAAGATGGAAAATTTGACATCA
GAAAGTCTTTTAAATACTTACCATATAAACGCTGTTGGTCCTGCCATGAT
GGTTAAGGTAGACAATTTCTCTCATGCCTTGTCAGGGAGTCAAGAAAGTC
TGGATAATAATTTCTTTTTGTCTTCATTTTACAGTTCCTTGGTTGATTCT
AGTTTTAACAAAACCCTGATTATAGCTTTCTATTTTCAGGCATTCTTACC
ACTTTTAAGACAAGCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTG
GCGTATTGAATATTAGCTCCAGAACTGGATCGATTGAAGATAATGGTATG
GGCAAGCTGTATGGCTCAAGGCTATCCAAAGTAAGCGCGATATTCTAAAT
AGAACATTTAGCATAATTTTAATAATATTTACGACTTCAGGTGAGCTTTC
ACGATGCTCAATGGAAACTGGTAGTTACCATGCCCTTGTGCTTTTTTTCA
GACGTGCCGATTTTTGAATAAACGTATCGTCTCATTTATATTCTTTTATA
TCATTTATTTTCCAGGGAGAAAGAAGATAACGAACTAGCTAACTAGCTAT
ATTTTGTTTAAGATTTGTTCTTGTTTTCTATAAAAAAAATTTATTTTGTT
TTGAAAAGAATTCGAATGTCATTAGTAATCAAATAAGGTCGTCAATTACA
TTTGAAAATATATAAAAGAAAAGAGAAAAAAAAGGGGTAAAAAGGGCAGA
AATTAAAATTGCTTAATGTAGATGGGTATTTAATTTCAAAACAAAGGCCA
AACGAAGTCTACAGGCTCTATCAACAAAAACATTCCGAAAACGAAAGAGT
AACACATGTACAGACAGACAGACAGACAAACAAACAAACAAACAAAGTGA
CATACAGACTACGGCTATTAATTTAACGTAGTATATAAATACAGTAAAAC
ACTTTCAATCATATTCATTGTTCTTTGACCTATCTTTTTCATTTCAGGTA
GCTTTAAACATGCTCACAAAAAACCTAAGCATAGAGTTGAAAGCAGACAA
TCTCATAGCTGTGGCTTTGAATCCTGGATGGGTCAAGACAGAAAATGGTG
GGGAGAATGCGCTGATAACAGCGGAACAAAGTGTACATGGCATGCTCAGT
GTTTATAAGGGCTTAACAATGAAAGATTCAGGTGCTTTCCTGAGCTATGA
TGGTTCAACAATACCTTGGTGATGCAACAAAATTTTTTTATTATTTTTCA
ATGTACATTTTTAAGTAATGTTTTTCTACACATATGCACTACACTATCTG
ATGATAAAATAGGACGTTCTCAAATGATTGGATGACATAAATAGAGTACT
GCAGGCTATCCTCGAATGCCCCCATATATACTACATCCCCCTATATAATA
TACACCTACCAAACCCGCACTATTTAAATTAGCGGTCTGTCAACCTTTTT
TTAACCATTTTCCAGCCATTTTCCATTATCAGATATGATGTTTTACAGAT
TTGGTAATCCTGAGGAAACTGGATTACACACTATTTTGAAAATAGCGCAA
CTACTCTTAAGTGCCAAATAAATGGCCCCCCCCGTTTAATAATTTTTAAA
AATATTTTTAGCTGTCAAATAGAAGGCCCTTATTTTGCTCTAAATAGCCT
GATTTTAGCCTATATTTACCTTATTTTGGGGTTTTCAGAAGTACAATTTC
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040891XLOC_040891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065228-exon-scaffold_433-1575043694:522992..523470TCONS_00065228-exon-scaffold_433-1575043694:522992..523470Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1575043694:520185..520236TCONS_00065228-exon-scaffold_433-1575043694:520185..520236Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1575043694:518414..518607TCONS_00065228-exon-scaffold_433-1575043694:518414..518607Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1575043694:518141..518281TCONS_00065228-exon-scaffold_433-1575043694:518141..518281Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1575043694:516819..517523TCONS_00065228-exon-scaffold_433-1575043694:516819..517523Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1510915933:522992..523470TCONS_00065228-exon-scaffold_433-1510915933:522992..523470Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1510915933:520185..520236TCONS_00065228-exon-scaffold_433-1510915933:520185..520236Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1510915933:518414..518607TCONS_00065228-exon-scaffold_433-1510915933:518414..518607Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1510915933:518141..518281TCONS_00065228-exon-scaffold_433-1510915933:518141..518281Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1510915933:516819..517523TCONS_00065228-exon-scaffold_433-1510915933:516819..517523Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1491911889:522992..523470TCONS_00065228-exon-scaffold_433-1491911889:522992..523470Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1491911889:520185..520236TCONS_00065228-exon-scaffold_433-1491911889:520185..520236Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1491911889:518414..518607TCONS_00065228-exon-scaffold_433-1491911889:518414..518607Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1491911889:518141..518281TCONS_00065228-exon-scaffold_433-1491911889:518141..518281Clytia hemisphaericaexon
TCONS_00065228-exon-scaffold_433-1491911889:516819..517523TCONS_00065228-exon-scaffold_433-1491911889:516819..517523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:516819..523470 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.958236	1.44079	1.67311	1.89613	2.39206	2.2934	2.93908	2.5732	2.30737	2.86237	2.86402	3.25894	2.39875	2.57406	2.23438	3.65467	1.43263	4.82093	0.96547	1.78954	1.50181	0.653238	0.335862	0.888942	1.48703	2.49665	0.264455	0.633321	1.07515	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top