TCONS_00065224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065224
Unique NameTCONS_00065224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065224 ID=TCONS_00065224|Name=TCONS_00065224|organism=Clytia hemisphaerica|type=transcript|length=1258bp
GAAAAACTGGAAAAGGAAATTGAAGTACGAGTGGATTTAACATGCTCCCA
TCAGTTTTAGTCACAGGTTGCAACAAAGGAATTGGCTTGGAATTCATAAA
ACAGCTGGTGGGTAAAACCTCCCACCTATTTGCAACATGTAGAACCCCCT
CAAAtGAGCTGTCCAAATTAGCAGAAGAGAATTCTAATCTACACATTTTG
CATGTTGGTAAGAATATTAAGTAACAAAGGATGATGACATCTTTGCAGCT
GCTGAACAAGTATCACATTTTGTGGAAGATGGCGGTTTACATTGTCTCAT
TAACAATGCTGGTGTTGTGAATTATGAACATGCAAAGATGGAAAATTTGA
CATCAGAAAGTCTTTTAAATACTTACCATATAAACGCTGTTGGTCCTGCC
ATGATGGTTAAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTC
TTCTTCAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTG
GATCGATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCC
AAAgtAGCTTTAAACATGCTCACAAAAAACCTAAGCATAGAGTTGAAAGC
AGACAATCTCATAGCTGTGGCTTTGAATCCTGGATGGGTCAAGACAGAAA
ATGGTGGGGAGAATGCGCTGATAACAGCGGAACAAAGTGTACATGGCATG
CTCAGTGTTTATAAGGGCTTAACAATGAAAGATTCAGGTGCTTTCCTGAG
CTATGATGGTTCAACAATACCTTGGTGatgcaacaaaatttttttattat
ttttcaatgtaCATTTTTAAGTAATGTTTTTCTACACATATGCACTACAC
TATCTGATGATAAAATAGGACGTTCTCAAATGATTGGATGACATAAATAG
AGTACTGCAGGCTATCCTCGAATGCCCCCATATATACTACATCCCCCTAT
ATAATATACACCTACCAAACCCGCACTATTTAAATTAGCGGTCTGTCAAc
ctttttttaaccattttccaGCCATTTTCCATTATCAGATATGATGTTTT
ACAGATTTGGTAATCCTGAGGAAACTGGATTACACACTATTTTGAAAATA
GCGCAACTACTCTTAAGTGCCAAATAAATGGCCCCCCCCgtttaataatt
tttaaaaatatttttagctgtCAAATAGAAggcccttattttgctctaaa
tagcctgattttagcctatatttaccttattttggggttttcagaagtac
aatttcca
Run BLAST on NCBI

transcript from alignment at scaffold_433:516819..523146-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065224 ID=TCONS_00065224|Name=TCONS_00065224|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at scaffold_433:516819..523146- (Clytia hemisphaerica)
GAAAAACTGGAAAAGGAAATTGAAGTACGAGTGGATTTAACATGCTCCCA
TCAGTTTTAGTCACAGGTTGCAACAAAGGAATTGGCTTGGAATTCATAAA
ACAGCTGGTGGGTAAAACCTCCCACCTATTTGCAACATGTAGAACCCCCT
CAAATGTAAGCTTTTTCACATTTTTGTTTGACCTTGACACTTTTATTTGA
CTTGTCAGATTTTAGATGTATAACAATAGGGTGTCTCCACAAGGGTCTAT
GGGCATCAGCAGAAACAACTATATTTGTTTGTGTTCGATTGCATTTGAAT
AACGTTTTATTGGTTCATAGACCTTTTCGCCGACGACCCACGCCACGGCA
TGGCCCGTCGCCCGAACATGTTCGGTCCTGTTCGGACCATGCTCGGGCCA
CAAAAAATTATTATTGAATCGGCCCAAACATTTTGTTCGGACCATGTCCA
TAGGAATAGTAGAATAGTAGAATTTAATTTTATTTACCTTTCCTGGTTTA
TCATCATCCATTGTTAAATATTTTCATTAGATTATTAGACAAATTCAAAG
TTCCAAATACCAGTTTGATTCACAAAGCTGTATAACAGTACAAAAAAAAA
TTCCAGAAAAATTCTGCTTCGAATAGGAGAAGACCACGAGAAAAGGGAAC
GGGATAAAGAATAAAAAGAACACCATATATTATGTAAGATTCAAATCATT
CTTTTTAATAATTTTCCTAACTTAATTGGAAAAAAGATGATTAACTTTTA
TATTTGAACAATATATATTTGAATAAAGATGAAGATTTTTAAATTTGTTT
GCTAAAATAATGAATTTAAAATATAAATATTGGGTCCTGAAATTACATGC
GGCAAGTTTTCGAAAATCTGGCCCGAACATGGTCCGAAACTGCGCCATTT
AAAAAAAGTATTAATCAAGAGGCCCGAACATGTTCGGGCCATGCCGTGGG
TCGTTTTCGCCTCCCTTCCATCCGCCATATTCCAGACATAATTAATCAAA
CACAGTTCGATTATAATCGAACAATCGAACTTTGTCGAACTTAATCGAAC
GACAAAAGTTGCTAAAATTGTGAGTATTCGATTAAGTTCGACAAAACATA
TTAAGTTTGACAAAGTTTGACAACGAGAAATGTTTGAAAAATTTGACAAA
AAACTCCGTTCGATAAAGTTCAACAACAAGGAAAGGTTCGACAAATTCGA
CAAAAAACTCCGTTCGAAAAAGTTCGACAACACAAAATGACCAAGTTCTT
CAAAGTGTTGTCAAAAGCTGGCAAAAATTACGAAAAATGACCTCCTTTGG
GTACCAGCCCCGGTGGGACCAATCTAGGCCTCTACAGCCCCCCACAGCCC
TTCGGACCGCTTTGGATACCCTCTGCCTTGCTTTCCCTCAAAGCCAGCAC
CATCCATCAGTCATCCGAAGCCCTTAAAAGGCTTGGAAAGGCGGAAAGGC
TTGAAATTGGTCAAAATTGGAAAAAAAATGACCTCCTTTGGGTACCACTG
CGGACGGCCCCTGGGGGTCCTGGCCGGTGTGCCGGGGGGTCTGATCGGTG
CTCAGTGGTCAGGGGGGTGTAAGCGAACACGCCTGCCCCGTTGGGGGTCC
TTCAAAATTCCTCAAAGTGCCATCAAAAGCCGGCAAAAGTTGTCAATAAT
GACCTCCTCAATTGAGGCTGCTACACCCCTTTCTCACCAGGAAAAATCGA
TGGTGAGACCAATTGAGGCCTCTACAGCCCTCCATAGCCCCTGTATTTTT
GCATACATCAAGATAACGGATGGAAATGCGAAAAGGTCTATTGATTTCAA
ATAGCTTTACTTTCAATCGATCTTCTATTATGTTGGATTAGTATGATTAC
GATTATGTTTGATAAGTTTGATTGCAATTTAATTGGCCCACTCCTTTCTT
TATACATAGAGCTTTAGCGTGGGTGGCCATGGGAAAATTAAATAAGAGTG
ACTGCATAAGTACCTTACAAGAAAGGCCATATATATTTTAGAAGGGCACT
TTTTCCAGTGTTTTTCCATTAAAAAGGCTGTTTTTACCAATATTTTAGTA
ATTTCAAGAGGGGCAAGGTACGATAACTGGACCCTTATAGGGCATGAAAA
ATGACCTGCATCAGTAAATAAATCAAATGAATGTAATCAAACATAATCGA
ATACAATCAAACGTAACTGAAGCAATTGAATGGCAAATCCTGTGTAATAT
TCAATTACGACATTCGACAATTCAATCACAATTATTCAACTGCATTTGAT
TGTGTTCAATTGATTAGGTATTCGATTAATTTGATTGACACCGTCTGGCC
ATGGCAACAACAATGATGATAGCGACTTCAGAATTCACACAGCTTTTGTT
GATGCCAAACCAAATGTTTCATTTTTTTGTGAATTTTGAACCCTTCTAAC
TTTTCTCTACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAACATAC
CGGGTGTCTGTGAAAATACTTCCCCCTGTTTGATTCAATATTGCGAAAAA
GTGAAAAAATATATTAGCTTTATTTTTTCTAAATCGTTTAGAGGAGGGTT
TAACTTAAATTTTGGTATATCAAACTTTAACATTGCTTCATTAGATCAAA
AGTTATGACAAAAAGAGTAAAAAAATTGTTGTCAAAAAGAGCACAAAAAG
ACGAAAAAACAAGGTATCAATTTACTTTTGATCTTCNGATAACTTTCACT
GATAGTGCGCCGTTTTTAATTTTTTTTATTCAAAATGACCGGATGCCGAT
TGAAGAAATAGAGAAAAAAGTTGCAATCATTGATGAACAATTATGTATGT
CTCTGGAAATGGTTGAAAACATAGTTGCAGGTTGAAACTTTGTATGTTTA
TCAGAAAGGAATTTAATAAGAACTTTAACACTATTACATTATTAAAATTT
ATTGTTCAAGGAGCTGTCCAAATTAGCAGAAGAGAATTCTAATCTACACA
TTTTGCATGTTGGTAAGAATATTGTAAGTTTTCTCACTATATTTATAAAA
TAATGTAGAATTAAAAAACTCTGGAGAAGATTTTCAACCAAAATTATAGA
AAACAGTGGTGTCTTATCATTTCATGGACAAGTTCTATTGAGTTTATTAA
ACTTAAAAGTACCTAGAAGGGAATCTTTTGGATGGAAAACTAAGCAACTA
ATGTCACAGGTTGGTTACCCAATTGTAGTTTTCACTCGAGAACAATGAAA
AGAAACAATAGATTCAAAAGTTTACCACGTGGTAGCAAAATTTGAAGAAG
GGAATCTTTTGGATGGAAAACTAAGCAACTAATGTTACAGGTTGGTTACC
CAATTGTGGTTTTCACTCGAGAACAATGAAAAGAACCAATAGATTCGAAA
GTGTTTACCACATGGTAGCAAAATAGAGTGCACTCTTTAAGCAAATGGAC
TACGTAAACATTTTCGAGCTTATCTACAATAGTGTGGTGGTTCCCCTTAA
TTTGAATAGCATTGCCATCAAGGCAGAAGATCCAATCTCAAAATAAGTAC
ATGAGAAAACTTCTTTTACTTTGCTAGCTTGAAATTTGAGTTTGTCCCCC
TTTTTTCTCTTGATCCTACCCAACTAAAAGAAAAAGGCCAGAATCTCAGA
ATTTTAAGTTAGGAAAGCAAAAAAAGTCTCAGTTATCTCAACACTAATTT
TGAGATTGGATCCTCTGCCTCGATAGCAGTGATAGATGGATCCATTTTGA
TTTCATAGAAGTAACAAAGGATGATGACATCTTTGCAGCTAAAGAACAAG
TATCACATTTTGTGGAAGATGGCGGTTTACATTGTCTCATTAACAATGCT
GGTGTTGTGAATTATGAACATGCAAAGATGGAAAATTTGACATCAGAAAG
TCTTTTAAATACTTACCATATAAACGCTGTTGGTCCTGCCATGATGGTTA
AGGTAGACAATTTCTCTCATGCCTTGTCAGGGAGTCAAGAAAGTCTGGAT
AATAATTTCTTTTTGTCTTCATTTTACAGTTCCTTGGTTGATTCTAGTTT
TAACAAAACCCTGATTATAGCTTTCTATTTTCAGGCATTCTTACCACTTT
TAAGACAAGCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTGGCGTA
TTGAATATTAGCTCCAGAACTGGATCGATTGAAGATAATGGTATGGGCAA
GCTGTATGGCTCAAGGCTATCCAAAGTAAGCGCGATATTCTAAATAGAAC
ATTTAGCATAATTTTAATAATATTTACGACTTCAGGTGAGCTTTCACGAT
GCTCAATGGAAACTGGTAGTTACCATGCCCTTGTGCTTTTTTTCAGACGT
GCCGATTTTTGAATAAACGTATCGTCTCATTTATATTCTTTTATATCATT
TATTTTCCAGGGAGAAAGAAGATAACGAACTAGCTAACTAGCTATATTTT
GTTTAAGATTTGTTCTTGTTTTCTATAAAAAAAATTTATTTTGTTTTGAA
AAGAATTCGAATGTCANTTCAACACTAATTTTGAGATTGGATCCTCTGCC
TCGATAGCAGCGATAGATGGATCCATTTTGATTTCATAGAAGTAACAAAG
GATGATGACATCTTTGCAGCTGCTGAACAAGTATCACATTTTGTGGAAGA
TGGCGGTTTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATGAAC
ATGCAAAGATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTACCAT
ATAAACGCTGTTGGTCCTGCCATGATGGTTAAGGTAGACAATTTCTCTCA
TGCCTTGTCAGGGAGTCAAGAAAGTCTGGATAATAATTTCTTTTTGTCTT
CATTTTACAGTTCCTTGGTTGATTCTAGTTTTAACAAAACCCTGATTATA
GCTTTCTATTTTCAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAA
TTCTTCTTCAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAA
CTGGATCGATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTA
TCCAAAGTAAGCGCGATATTCTAAATAGAACATTTAGCATAATTTTAATA
ATATTTACGACTTCAGGTGAGCTTTCACGATGCTCAATGGAAACTGGTAG
TTACCATGCCCTTGTGCTTTTTTTCAGACGTGCCGATTTTTGAATAAACG
TATCGTCTCATTTATATTCTTTTATATCATTTATTTTCCAGGGAGAAAGA
AGATAACGAACTAGCTAACTAGCTATATTTTGTTTAAGATTTGTTCTTGT
TTTCTATAAAAAAAATTTATTTTGTTTTGAAAAGAATTCGAATGTCATTA
GTAATCAAATAAGGTCGTCAATTACATTTGAAAATATATAAAAGAAAAGA
GAAAAAAAAGGGGTAAAAAGGGCAGAAATTAAAATTGCTTAATGTAGATG
GGTATTTAATTTCAAAACAAAGGCCAAACGAAGTCTACAGGCTCTATCAA
CAAAAACATTCCGAAAACGAAAGAGTAACACATGTACAGACAGACAGACA
GACAAACAAACAAACAAACAAAGTGACATACAGACTACGGCTATTAATTT
AACGTAGTATATAAATACAGTAAAACACTTTCAATCATATTCATTGTTCT
TTGACCTATCTTTTTCATTTCAGGTAGCTTTAAACATGCTCACAAAAAAC
CTAAGCATAGAGTTGAAAGCAGACAATCTCATAGCTGTGGCTTTGAATCC
TGGATGGGTCAAGACAGAAAATGGTGGGGAGAATGCGCTGATAACAGCGG
AACAAAGTGTACATGGCATGCTCAGTGTTTATAAGGGCTTAACAATGAAA
GATTCAGGTGCTTTCCTGAGCTATGATGGTTCAACAATACCTTGGTGATG
CAACAAAATTTTTTTATTATTTTTCAATGTACATTTTTAAGTAATGTTTT
TCTACACATATGCACTACACTATCTGATGATAAAATAGGACGTTCTCAAA
TGATTGGATGACATAAATAGAGTACTGCAGGCTATCCTCGAATGCCCCCA
TATATACTACATCCCCCTATATAATATACACCTACCAAACCCGCACTATT
TAAATTAGCGGTCTGTCAACCTTTTTTTAACCATTTTCCAGCCATTTTCC
ATTATCAGATATGATGTTTTACAGATTTGGTAATCCTGAGGAAACTGGAT
TACACACTATTTTGAAAATAGCGCAACTACTCTTAAGTGCCAAATAAATG
GCCCCCCCCGTTTAATAATTTTTAAAAATATTTTTAGCTGTCAAATAGAA
GGCCCTTATTTTGCTCTAAATAGCCTGATTTTAGCCTATATTTACCTTAT
TTTGGGGTTTTCAGAAGTACAATTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040891XLOC_040891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065224-exon-scaffold_433-1575043694:522992..523146TCONS_00065224-exon-scaffold_433-1575043694:522992..523146Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1575043694:520174..520236TCONS_00065224-exon-scaffold_433-1575043694:520174..520236Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1575043694:519419..519438TCONS_00065224-exon-scaffold_433-1575043694:519419..519438Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1575043694:518414..518587TCONS_00065224-exon-scaffold_433-1575043694:518414..518587Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1575043694:518141..518281TCONS_00065224-exon-scaffold_433-1575043694:518141..518281Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1575043694:516819..517523TCONS_00065224-exon-scaffold_433-1575043694:516819..517523Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:522992..523146TCONS_00065224-exon-scaffold_433-1510915933:522992..523146Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:520174..520236TCONS_00065224-exon-scaffold_433-1510915933:520174..520236Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:519419..519438TCONS_00065224-exon-scaffold_433-1510915933:519419..519438Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:518414..518587TCONS_00065224-exon-scaffold_433-1510915933:518414..518587Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:518141..518281TCONS_00065224-exon-scaffold_433-1510915933:518141..518281Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1510915933:516819..517523TCONS_00065224-exon-scaffold_433-1510915933:516819..517523Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:522992..523146TCONS_00065224-exon-scaffold_433-1491911889:522992..523146Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:520174..520236TCONS_00065224-exon-scaffold_433-1491911889:520174..520236Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:519419..519438TCONS_00065224-exon-scaffold_433-1491911889:519419..519438Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:518414..518587TCONS_00065224-exon-scaffold_433-1491911889:518414..518587Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:518141..518281TCONS_00065224-exon-scaffold_433-1491911889:518141..518281Clytia hemisphaericaexon
TCONS_00065224-exon-scaffold_433-1491911889:516819..517523TCONS_00065224-exon-scaffold_433-1491911889:516819..517523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:516819..523146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8484	12.5388	2.77778	3.63259	1.11897	2.30776e-07	0.000876283	0	3.65825	2.37154	2.08233	1.52652e-07	2.33313	2.39199	4.48963	6.49628	1.00775	2.77299	0.489475	3.48876	4.2489	1.06513	7.99998	6.96231	0.257728	0	1.50829	1.59666	3.2753	3.52918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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