|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065222 ID=TCONS_00065222|Name=TCONS_00065222|organism=Clytia hemisphaerica|type=transcript|length=1560bpRun BLAST on NCBI protein sequence of TCONS_00065222-protein >TCONS_00065222-protein ID=TCONS_00065222-protein|Name=TCONS_00065222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp MSGYTISVTDATKDGEIIKFTVQTKLDDNSDSESGKIVLRQYEDFEYLLHRun BLAST on NCBI transcript from alignment at scaffold_433:473921..515307- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065222 ID=TCONS_00065222|Name=TCONS_00065222|organism=Clytia hemisphaerica|type=transcript|length=41387bp|location=Sequence derived from alignment at scaffold_433:473921..515307- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_433:473921..515307- >TCONS_00065222 ID=TCONS_00065222|Name=TCONS_00065222|organism=Clytia hemisphaerica|type=CDS|length=15204bp|location=Sequence derived from alignment at scaffold_433:473921..515307- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065222 vs. Swiss-Prot (Human)
Match: SNX6 (Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-16 Identity = 95/382 (24.87%), Postives = 172/382 (45.03%), Query Frame = 3
Query: 51 IQKMSGYTISVTDATKDGEIIKFTVQTKLDDNSDSESGKIVLRQYEDFEYLLHVLTTKNDCNGVFVPILPPKP-FVAPNQTDAKNKISNSVSQLVKGD----------EYAQDCKRIAK----FMQDLAAHPSFQNDENLKNFLTEEQ-APARAAVKRGLLDSF----INVVDNARFHHFPDSDEEFQGWRDNTNTLLTHLKQLHMIKEKLLMIENGHSASYGNLSKTFSNSNLMDIQQSKPLMRFIGQFADTLEDTMKHGQSSTFISEDTLGTAIELYTRYMQACQTMLFRRTTKMVELDNXXXXXXXXXXXNQEQLQQ--AKDDAEKAFEEITEVMRKEYEDFNTKRIQFFQQSLEALAERKIEEHKTTSDLLSKVIVEL 1130
+Q + + ++DA + + +KFTV TK + ++ V+RQ+E+F +L D G +P PP+P F A + K+ + K + EY K+ F+ +AAHP + D N FL Q R K+ L+ F + D D D+ F+ R LL + ++ K + H ++ + ++ S+ + Q S + +F + ++ + T K + + L ++ Y R QA + +L+RR+ +V+ +NA KAL KA+ KN++ LQ ++ + FE+I+E ++E DF T+R+ F+++L LAE +++ K LL + L
Sbjct: 26 LQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREK--LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHER---TFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402 The following BLAST results are available for this feature:
BLAST of TCONS_00065222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.