TCONS_00065218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065218
Unique NameTCONS_00065218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065218 ID=TCONS_00065218|Name=TCONS_00065218|organism=Clytia hemisphaerica|type=transcript|length=1543bp
catagctAATAACAAGTGGCATTTATAACTCTGATTCCAAACTGTCAAGT
GTCATGAAAGCACGTAAAAACGTTGAGAAAACTTGTGTTCCATGGCAAGA
AGACAAAGAAGTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAA
CATTCAGAAGAACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAAC
TGCATTGATTTCTTAGAGCCCAGCCTTGCTAACAGCGTGATAGCATTGAC
GCATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACAAAAGATC
CAGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACTTACTCGAAAGG
CAAAATAAAGTGTTCCAAGATAAAACAGCCAATGAACTTTTAGTGAAGTC
ATATGAGCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACCAA
AGTTTCTCAAGATGGCTGACTCTGTCAaGCGAAACAGAGTATAGCTTACA
ATTGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTG
AGAGTCTCAGTAAACACATACAACAGCTAGGCATTGGAACTAATAAAGAA
CCAGGACCCCGTGCGCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGCATC
AAGCTATCTAGCAGACAACATGTTTACGTTACCAGGGTTACCCTCCCAAG
ATAAATATGACGCCAtgttgaaagaaaaagaaaaacaacgtGAGAGaatg
aaacaagaaaaaatgCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAA
TCGTGGGAAAAACAATAATTTTGATAGCCTGGATTCCGGTCAACCAACTG
GTAACCAGTCTAGAGATCCATCTGCAGAACGTTCAATTCCAAATGTACCA
GACAATGCACATGTTGATTCAACGTCAGGTAGAACTTCAGTAACTGGACT
TAATATAAGAGATCGTTTGAGTGGTAAACATAAAGAAAGACAGAAATTTA
TAGGTGATTCTACAGACCCTGATGGTGAATACCATCAAGGGGGACCCTCT
ACTAGTGGCCCTCGTATTAGAGACAGATTCAACAGAGCCATGAACGAGTT
CGTTGATGATGTCAAACATACAACACACTCTGCGATTCAAGCTATTTCTA
TTTCCAAACCGACTGAGACGTCTTGGGGACCGGCTCAAGTTCAAGTTGAT
GATGACTCTGACCCCATACTTCAACAAATTCAAATTATTGAGAGTTATAT
TAAACAGGCTCGTGATGACGGACGTTGGGAAGAAGTGAAAATGTTTGAAC
AGAATTTACAAGAACTACACATGGTTCGCCAGGCTGATAGGTAGCCCTCC
TGGGTTTCGATTTTTTGGTTTTATTACTGGTTCATAATAGGGGGAAGGTA
TGCACCAGCGGGAAACTTATATATTCTTATAGCTCCTGAAGAAATCATCT
TCAGGCATGATTTTCTTTTCGCACACCTTTGATCATAATCACATTTATGG
CATTAATGTGTCATAAAGATTGGCACTTTTAGTTTTCAGTACG
Run BLAST on NCBI

transcript from alignment at scaffold_433:464797..469471-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065218 ID=TCONS_00065218|Name=TCONS_00065218|organism=Clytia hemisphaerica|type=transcript|length=4675bp|location=Sequence derived from alignment at scaffold_433:464797..469471- (Clytia hemisphaerica)
CATAGCTAATAACAAGTGGCATTTATAACTCTGATTCCAAACTGTCAAGT
GTCATGAAAGCACGTAAAAGTAAGATTAATATATTTTTTCACTTGCTCAT
TTCTGTTTGTTGCAGTTTCAAAGTTTTCTCTTGTTTTCAGTAACAATAAG
AAATTGATTTTGTGATTTTGCTTCCACATTTGGCCCATCATTGGGCCTTT
CATTACCATGTCGCTGACGCGGTGCTAATGTCTCCATTTTTGAAGAAGCA
GCACTTTGTTAACTCAAGCTCATTTTTGAAGAAACAGCGTCTTCTGGTGC
CAAGTTTACACATTGCAAACAAACATTCGATTCATACTGCTTCACCTTCT
TGTTTTTAATGTTGAACTCTAAAAAACTTTTTAGCTTGATACTGTTTAAA
ATAATCGACGTTTTCGATACATATATTGACAGATGTAACAAAGTTTGGCT
GTTTCTGTTCAGCTTTTTGTTGTATTTTTTATAATTAGACGTTGAGAAAA
CTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAATTTTGTCCAAGTTGT
GAGAAGAAATTCACATTAACATTCAGAAGAACACATTGTCGATTATGTGG
TCAGGTTTACTGTATAAACTGCATTGATTTCTTAGAGCCCAGCCTTGCTA
GTAAGTATAAACAACAACAAGTTCCCTATTCTGTTCAATGAAAACTTGAC
ATATTTCATATAGATTATCGAATATATACCTCTCAACTCTGGGCTCTATT
ATTGTGATTTGATTCATGGGTGTTACCAAGCACTTCTTCTTATCGTCATC
CTCCTAAAATTGAGTGTTATTAAAATTTAATAATAAAACATGTCAGGCTG
GATTACATTTTGTGAATTTTTTTCCAGCCAGGATTTTGTTTTTATTGCAC
TTTCACCCTGATATTATCGGTGGTTTTATTGGGTTTTTGCTGTATTTTCT
GCTTTTTGCTCATTCTCATAAAATTGAGTATGGTAATTTGTAATGAGGCT
CTTGGATAAAACCCTGTAGAATAAAATTTCAGGCGTGTGGTCAATCACAC
TCCTAAAACCTTAATTTTAGTAATTTAGGCGTGTGATAAGGAGTGCTATG
CACAACTTTCAGTTGTGAAACTTACTTTATGGTATGTGATTGATCGCACT
CCTCAGACATTTTAGGTGTGTGTGGAGGTGTGCGCGTGCTATTGCACGCT
TCAAATGATGTAGATTTGGAAGATAGAGAGATAGTCGTATAATATCATCT
CATTCCAACACTCTTCTTTATAGTTGGGAATTTGAATGACCTGATTCTGA
TGGACACATCTCGTTTTTTTCGGATGAATAGGAAAATATCTTATGTCAGT
CAGTGATTTTAACCTTCTATATTCCTATTTTCTTTAGACAGCGTGATAGC
ATTGACGCATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACAA
AAGATCCAGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACTTACTC
GAAAGGTTATTTGTTGTGGATTTTTTGAATAATTATCTAAAGCCAATAAT
TATGTTCATTTGTATTATTGTATTCACAATCAACACCAAAAATATTAAAT
CAAATATGAAAATTCACAGCAAAAAAAGCCTTTAAAATTGNAAAGGTTAT
TTGTTGTGGATTTTTTGAATAATTATCTAAAGCCAATAATTATGTTCATT
TGTAAAACACCAAAAATATTAAATCAAATATGAAAATTCACAGCAAGAAA
GCCTTTAAAATTTAAAAGTTTTGTTTGAAAATCAATTTTTAACTGTCAAA
CTTGGTTATTTTTTAACACTTTTTCTTTTATTATTTTCTTATTGCAGGCA
AAATAAAGTGTTCCAAGATAAAACAGCCAATGAACTTTTAGTGAAGTCAT
ATGAGGTAAGACCATACTTTAAATTTTTTATAATATTTCCTTCTGGCCAT
AGTCAGTTAATTCTACAATTATAAAGCTATTTTTTTCTCTTTATTGTTTT
ACAGCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACCAAAGT
TTCTCAAGATGGCTGACTCTGTCAAGTATTTTATCTTTTTCTGTTATACT
AATTATTATGTCCAAAAAATACTTACTTGGATGCTTCATATAAAAAGAAT
TCTCATTTAATAAAGTTGATGCTGATGAATAATATAAACTTCATTGGAAA
AATCATTTAAGCTGGATTATTATTGAAATTATAAGTAGCATGGTTTTTTA
AGATTTTCTCCTTTTTGGTTGTACTGTATTGTAGTTATACGATAGGCTAT
ATATTTTTATGATTTAGAAAACTTTTAGGATAGGAAACTGTGGGAAACTC
TGGGAAACTTTGTAAAAAAGACAAGCAGGGCTGCAAATAAGCGTCGGTCA
TCGGTCAATGTCCGACTGAAAAAAGGAATAAACCATTAACTTGAGAGTTG
AAAATAGATCTCTTACACCTCTGTCTCTTACTTAGCCTATTCTTTTAATA
CTCGCTTCCTTTGTAGCTTTCAGGGTGTTTCTAAGTTTTTTACTTTTATC
GAATTGCTTTCTTCATTACTTTCTTTGTTTCTAAGATCACTTTTATCAAC
CCGCTTTCTTTGTAACTTTTAAGGGTGTTTCTAAAATTACTTTTGTCAAC
TTGCTTTCTTCCTAACCTTCTTTGTTTCTAAGATCACTTTTATCAATTTG
CTTTCTTTGTAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCG
CTTTCTTCGTAAATTTCAAGGGTGTTTCAAAGTTAACTTTTATCGATTCG
CTTTCTTCGTAACCTTCAAGAGTGTTTCAAAGTTAACTTTTATCGACTCG
CTTTCTTTATAATTTTCAAAAGTGTTTCTAAAGATCACTTTTATCAATTC
GCTTTCTTCGTAAATTTCAAGGGTTTTCAAGGGTGTTTCAAAGTTAACTT
TTATCGACTCGTAACTTTCAAGAGTGTTTTTAAGACCACTTTTATCAACT
TGCTTACTTCATAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCGAAT
CAATTTCTCTGTTATATACAGTAACAAACTGTTCCGAGGTAACTTTTATT
TTACCTACTCGCTTACTCCGTAACTTTCAAGACTGCATAATTATTAAAAA
TATATACACTGAATGACCGGCAGGATTTTGAGTTTGACCGACAGGATTTA
ATTTCTGTCGGACATGATGTCCGATTGACTAAAAATATTTATTTGCAGCC
CTGGACAAGCAGTTGCTCTAATTATTTCATCAATTTTATTTTGTTTTTAG
TGCAGGCGAAACAGAGTATAGCTTACAATTGGCAATGGAGACACGTCACA
AACTTTTAAAACAGTATGAAACTATTGAGAGTCTCAGGTATTATTTATTA
TAATCCTCTCTTGTCAAAAGGCTGTTGTTTCATCAATGTGCTTGAAACAT
TCCATGAAGGCTTGAACACGAATTTTATCTTTTATTTCCAAACTGTAGCT
GTGACATTAAGCAACACGAATAAAGCATCTCAGATACCAAGTTTTTGTCT
TAAAATACCTTAAAGGGGAAAACATAGTCTGTTACCATCCTCTTGAAATT
GACCAGAAAGAGTTTCCATTATTCCGTCACATTTCCCAGTCTAACTTTTC
CTCCTAAAAGTAAACGTTCTTTGATGCTTTACTTTGTTTCAGTAAACACA
TACAACAGCTAGGCATTGGAACTAATAAAGAACCAGGACCCCGTGCGCGA
AAGTTGCAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAA
CATGTTTACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCATGT
TGAAAGAAAAAGAAAAACAACGTGAGAGAATGAAACAAGAAAAAATGCTA
CAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAA
TTTTGATAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATC
CATCTGCAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGAT
TCAACGTCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTT
GAGTGGTAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACC
CTGATGGTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATT
AGAGACAGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACA
TACAACACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGA
CGTCTTGGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATA
CTTCAACAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGA
CGGACGTTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTAC
ACATGGTTCGCCAGGCTGATAGGTAGCCCTCCTGGGTTTCGATTTTTTGG
TTTTATTACTGGTTCATAATAGGGGGAAGGTATGCACCAGCGGGAAACTT
ATATATTCTTATAGCTCCTGAAGAAATCATCTTCAGGCATGATTTTCTTT
TCGCACACCTTTGATCATAATCACATTTATGGCATTAATGTGTCATAAAG
ATTGGCACTTTTAGTTTTCAGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040888XLOC_040888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065218-exon-scaffold_433-1575043694:469403..469471TCONS_00065218-exon-scaffold_433-1575043694:469403..469471Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:468822..468983TCONS_00065218-exon-scaffold_433-1575043694:468822..468983Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:467967..468084TCONS_00065218-exon-scaffold_433-1575043694:467967..468084Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:467567..467624TCONS_00065218-exon-scaffold_433-1575043694:467567..467624Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:467397..467467TCONS_00065218-exon-scaffold_433-1575043694:467397..467467Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:466085..466166TCONS_00065218-exon-scaffold_433-1575043694:466085..466166Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1575043694:464797..465779TCONS_00065218-exon-scaffold_433-1575043694:464797..465779Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:469403..469471TCONS_00065218-exon-scaffold_433-1510915933:469403..469471Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:468822..468983TCONS_00065218-exon-scaffold_433-1510915933:468822..468983Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:467967..468084TCONS_00065218-exon-scaffold_433-1510915933:467967..468084Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:467567..467624TCONS_00065218-exon-scaffold_433-1510915933:467567..467624Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:467397..467467TCONS_00065218-exon-scaffold_433-1510915933:467397..467467Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:466085..466166TCONS_00065218-exon-scaffold_433-1510915933:466085..466166Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1510915933:464797..465779TCONS_00065218-exon-scaffold_433-1510915933:464797..465779Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:469403..469471TCONS_00065218-exon-scaffold_433-1491911889:469403..469471Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:468822..468983TCONS_00065218-exon-scaffold_433-1491911889:468822..468983Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:467967..468084TCONS_00065218-exon-scaffold_433-1491911889:467967..468084Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:467567..467624TCONS_00065218-exon-scaffold_433-1491911889:467567..467624Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:467397..467467TCONS_00065218-exon-scaffold_433-1491911889:467397..467467Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:466085..466166TCONS_00065218-exon-scaffold_433-1491911889:466085..466166Clytia hemisphaericaexon
TCONS_00065218-exon-scaffold_433-1491911889:464797..465779TCONS_00065218-exon-scaffold_433-1491911889:464797..465779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:464797..469471 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.49096	5.97097	1.0321	0.000939998	1.99279	2.32722	1.66831	1.48181	1.56839	3.44407	3.19748	1.03889	2.24363	3.50645	1.50731	3.21864	2.96964	3.31843	1.86815	0.128102	3.32633	2.29228	11.5661	5.66775	0	2.00577	2.21543	0.389644	3.84126	5.19031
Blast
[Close]
BLAST of TCONS_00065218 vs. Swiss-Prot (Human)
Match: RBNS5 (Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.642e-25
Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = 3 
Query:   66 KNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINCIDFLEPSLANSVIAL------THGKGASS------------------QMMLKETKDPEDGLKTCIRCLNLLERQNKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSV 476
            + +EK+ VPW  D++V FCP C  KF++  RR HCRLCG + C  C++ +   LAN + +       TH   + S                    +L E  D  D ++ C  C + L ++ +   +K     +VK YE+++  M+  D   P++++MA S+
Sbjct:  145 RAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDD--DRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMAASL 303

HSP 2 Score: 51.9878 bits (123), Expect = 2.642e-25
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  475 SSETEYSLQLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFASSYLADNMFTLPGLPSQDKY 708
            + ET YSL+ A + R ++ K YE I++LSK I  LG+  +  P P   +LQ  IR  A+ ++ + +  L  LP+++++
Sbjct:  305 AGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRYSATLFVQEKLLGLMSLPTKEQF 382
The following BLAST results are available for this feature:
BLAST of TCONS_00065218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBNS52.642e-2529.19Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2[more]
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