TCONS_00065217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065217
Unique NameTCONS_00065217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2028

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065217 ID=TCONS_00065217|Name=TCONS_00065217|organism=Clytia hemisphaerica|type=transcript|length=2028bp
attttttgaaagtgtctggGGTGgggcctagatatgcttataagtgcaat
gcttataaaaaacatggaGTGAATTGAAAGTTTCATGAAATCTTCACAAG
CTTCATaagatttattattttcatagctAATAACAAGTGGCATTTATAAC
TCTGATTCCAAACTGTCAAGTGTCATGAAAGCACGTAAAAACGTTGAGAA
AACTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAATTTTGTCCAAGTT
GTGAGAAGAAATTCACATTAACATTCAGAAGAACACATTGTCGATTATGT
GGTCAGGTTTACTGTATAAACTGCATTGATTTCTTAGAGCCCAGCCTTGC
TAACAGCGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCACAAATGA
TGTTGAAAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGCATCAGA
TGCTTAAACTTACTCGAAAGGCAAAATAAAGTGTTCCAAGATAAAACAGC
CAATGAACTTTTAGTGAAGTCATATGAGCGAATGAAATCGGCAATGCAAA
ATGCAGACTTGATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAat
gCAGGCGAAACAGAGTATAGCTTACAATTGGCAATGGAGACACGTCACAA
ACTTTTAAAACAGTATGAAACTATTGAGAGTCTCAGTAAACACATACAAC
AGCTAGGCATCGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGTTG
CAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATGTT
TACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCAtgttgaaag
aaaaagaaaaacaacgtGAGAGaatgaaacaagaaaaaatgCTACAAGCT
GCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTTGA
TAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATCTG
CAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGATTCAACG
TCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGTGG
TAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGATG
GTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAGAC
AGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACATACAAC
ACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTCAT
GGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTCAA
CAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGACG
TTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTACACATGG
TTCGCCAGGCTGATAGGTAGCCCTCCTGGGTTTCGATTTTTTGGTTTTAT
TACTGGTTCATGATATTAAGGGGAAGGTATGCACCAGCGGGAAACTTATA
TATTCTTATAGCTCCTGAAGAAATCATCTTCAGGTATGATTTTCTTTTCG
CACACCTTTGATCATATTAACATCTATGACATTGATGTGTCATAAGGATT
GGCACTTTTAGTTTTTAGTACAATCTTAAtaatagaaatttatttttaaa
taatctGTTCATATTCCTCATCAAAGTCTATGATTAGAAAAGTCTACCTA
AATAACCTAAAACGAGCTGTTATGACCCAAACCTTTTTCAATATACTTTT
ACCTTATCTATAGTAATAATTATTCTGTTTGTAAATTTCATATTCTTCCA
TTTTTTACccaagattttcttttcatatatttttttattcagatttttat
tttttcattcttttgattttagtgtTTTCGTTAGTTTAGTTGTTTTTCTT
CCGAtgatttttaatgaatttctaaTGTTTTGTTTAGTTAATCCTAGAGA
TAAAAATTAAGAATGATATGCAATGATA
Run BLAST on NCBI

protein sequence of TCONS_00065217-protein

>TCONS_00065217-protein ID=TCONS_00065217-protein|Name=TCONS_00065217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MKARKNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINC
IDFLEPSLANSVIALTHGKGASSQMMLKETKDPEDGLKTCIRCLNLLERQ
NKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSVNAGETEYSL
QLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFA
SSYLADNMFTLPGLPSQDKYDAMLKEKEKQRERMKQEKMLQAAKSKVSSL
NRGKNNNFDSLDSGQPTGNQSRDPSAERSIPNVPDNAHVDSTSGRTSVTG
LNIRDRLSGKHKERQKFIGDSTDPDGEYHQGGPSTSGPRIRDRFNRAMNE
FVDDVKHTTHSAIQAISISKPTETSWGPAQVQVDDDSDPILQQIQIIESY
IKQARDDGRWEEVKMFEQNLQELHMVRQADR
Run BLAST on NCBI

transcript from alignment at scaffold_433:462795..469592-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065217 ID=TCONS_00065217|Name=TCONS_00065217|organism=Clytia hemisphaerica|type=transcript|length=6798bp|location=Sequence derived from alignment at scaffold_433:462795..469592- (Clytia hemisphaerica)
ATTTTTTGAAAGTGTCTGGGGTGGGGCCTAGATATGCTTATAAGTGCAAT
GCTTATAAAAAACATGGAGTGAATTGAAAGTTTCATGAAATCTTCACAAG
CTTCATAAGATTTATTATTTTCATAGCTAATAACAAGTGGCATTTATAAC
TCTGATTCCAAACTGTCAAGTGTCATGAAAGCACGTAAAAGTAAGATTAA
TATATTTTTTCACTTGCTCATTTCTGTTTGTTGCAGTTTCAAAGTTTTCT
CTTGTTTTCAGTAACAATAAGAAATTGATTTTGTGATTTTGCTTCCACAT
TTGGCCCATCATTGGGCCTTTCATTACCATGTCGCTGACGCGGTGCTAAT
GTCTCCATTTTTGAAGAAGCAGCACTTTGTTAACTCAAGCTCATTTTTGA
AGAAACAGCGTCTTCTGGTGCCAAGTTTACACATTGCAAACAAACATTCG
ATTCATACTGCTTCACCTTCTTGTTTTTAATGTTGAACTCTAAAAAACTT
TTTAGCTTGATACTGTTTAAAATAATCGACGTTTTCGATACATATATTGA
CAGATGTAACAAAGTTTGGCTGTTTCTGTTCAGCTTTTTGTTGTATTTTT
TATAATTAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAA
GTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAAG
AACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCATTGATT
TCTTAGAGCCCAGCCTTGCTAGTAAGTATAAACAACAACAAGTTCCCTAT
TCTGTTCAATGAAAACTTGACATATTTCATATAGATTATCGAATATATAC
CTCTCAACTCTGGGCTCTATTATTGTGATTTGATTCATGGGTGTTACCAA
GCACTTCTTCTTATCGTCATCCTCCTAAAATTGAGTGTTATTAAAATTTA
ATAATAAAACATGTCAGGCTGGATTACATTTTGTGAATTTTTTTCCAGCC
AGGATTTTGTTTTTATTGCACTTTCACCCTGATATTATCGGTGGTTTTAT
TGGGTTTTTGCTGTATTTTCTGCTTTTTGCTCATTCTCATAAAATTGAGT
ATGGTAATTTGTAATGAGGCTCTTGGATAAAACCCTGTAGAATAAAATTT
CAGGCGTGTGGTCAATCACACTCCTAAAACCTTAATTTTAGTAATTTAGG
CGTGTGATAAGGAGTGCTATGCACAACTTTCAGTTGTGAAACTTACTTTA
TGGTATGTGATTGATCGCACTCCTCAGACATTTTAGGTGTGTGTGGAGGT
GTGCGCGTGCTATTGCACGCTTCAAATGATGTAGATTTGGAAGATAGAGA
GATAGTCGTATAATATCATCTCATTCCAACACTCTTCTTTATAGTTGGGA
ATTTGAATGACCTGATTCTGATGGACACATCTCGTTTTTTTCGGATGAAT
AGGAAAATATCTTATGTCAGTCAGTGATTTTAACCTTCTATATTCCTATT
TTCTTTAGACAGCGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCAC
AAATGATGTTGAAAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGC
ATCAGATGCTTAAACTTACTCGAAAGGTTATTTGTTGTGGATTTTTTGAA
TAATTATCTAAAGCCAATAATTATGTTCATTTGTATTATTGTATTCACAA
TCAACACCAAAAATATTAAATCAAATATGAAAATTCACAGCAAAAAAAGC
CTTTAAAATTGNAAAGGTTATTTGTTGTGGATTTTTTGAATAATTATCTA
AAGCCAATAATTATGTTCATTTGTAAAACACCAAAAATATTAAATCAAAT
ATGAAAATTCACAGCAAGAAAGCCTTTAAAATTTAAAAGTTTTGTTTGAA
AATCAATTTTTAACTGTCAAACTTGGTTATTTTTTAACACTTTTTCTTTT
ATTATTTTCTTATTGCAGGCAAAATAAAGTGTTCCAAGATAAAACAGCCA
ATGAACTTTTAGTGAAGTCATATGAGGTAAGACCATACTTTAAATTTTTT
ATAATATTTCCTTCTGGCCATAGTCAGTTAATTCTACAATTATAAAGCTA
TTTTTTTCTCTTTATTGTTTTACAGCGAATGAAATCGGCAATGCAAAATG
CAGACTTGATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAAGTAT
TTTATCTTTTTCTGTTATACTAATTATTATGTCCAAAAAATACTTACTTG
GATGCTTCATATAAAAAGAATTCTCATTTAATAAAGTTGATGCTGATGAA
TAATATAAACTTCATTGGAAAAATCATTTAAGCTGGATTATTATTGAAAT
TATAAGTAGCATGGTTTTTTAAGATTTTCTCCTTTTTGGTTGTACTGTAT
TGTAGTTATACGATAGGCTATATATTTTTATGATTTAGAAAACTTTTAGG
ATAGGAAACTGTGGGAAACTCTGGGAAACTTTGTAAAAAAGACAAGCAGG
GCTGCAAATAAGCGTCGGTCATCGGTCAATGTCCGACTGAAAAAAGGAAT
AAACCATTAACTTGAGAGTTGAAAATAGATCTCTTACACCTCTGTCTCTT
ACTTAGCCTATTCTTTTAATACTCGCTTCCTTTGTAGCTTTCAGGGTGTT
TCTAAGTTTTTTACTTTTATCGAATTGCTTTCTTCATTACTTTCTTTGTT
TCTAAGATCACTTTTATCAACCCGCTTTCTTTGTAACTTTTAAGGGTGTT
TCTAAAATTACTTTTGTCAACTTGCTTTCTTCCTAACCTTCTTTGTTTCT
AAGATCACTTTTATCAATTTGCTTTCTTTGTAACTTTCAAGAGTGTTTCT
AAGATCACTTTTATCAATTCGCTTTCTTCGTAAATTTCAAGGGTGTTTCA
AAGTTAACTTTTATCGATTCGCTTTCTTCGTAACCTTCAAGAGTGTTTCA
AAGTTAACTTTTATCGACTCGCTTTCTTTATAATTTTCAAAAGTGTTTCT
AAAGATCACTTTTATCAATTCGCTTTCTTCGTAAATTTCAAGGGTTTTCA
AGGGTGTTTCAAAGTTAACTTTTATCGACTCGTAACTTTCAAGAGTGTTT
TTAAGACCACTTTTATCAACTTGCTTACTTCATAACTTTCAAGAGTGTTT
CTAAGATCACTTTTATCGAATCAATTTCTCTGTTATATACAGTAACAAAC
TGTTCCGAGGTAACTTTTATTTTACCTACTCGCTTACTCCGTAACTTTCA
AGACTGCATAATTATTAAAAATATATACACTGAATGACCGGCAGGATTTT
GAGTTTGACCGACAGGATTTAATTTCTGTCGGACATGATGTCCGATTGAC
TAAAAATATTTATTTGCAGCCCTGGACAAGCAGTTGCTCTAATTATTTCA
TCAATTTTATTTTGTTTTTAGTGCAGGCGAAACAGAGTATAGCTTACAAT
TGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTGAG
AGTCTCAGGTATTATTTATTATAATCCTCTCTTGTCAAAAGGCTGTTGTT
TCATCAATGTGCTTGAAACATTCCATGAAGGCTTGAACACGAATTTTATC
TTTTATTTCCAAACTGTAGCTGTGACATTAAGCAACACGAATAAAGCATC
TCAGATACCAAGTTTTTGTCTTAAAATACCTTAAAGGGGAAAACATAGTC
TGTTACCATCCTCTTGAAATTGACCAGAAAGAGTTTCCATTATTCCGTCA
CATTTCCCAGTCTAACTTTTCCTCCTAAAAGTAAACGTTCTTTGATGCTT
TACTTTGTTTCAGTAAACACATACAACAGCTAGGCATTGGAACTAATAAA
GAACCAGGACCCCGTGCGCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGC
ATCAAGCTATCTAGCAGACAACATGTTTACGTTACCAGGGTTACCCTCCC
AAGATAAATATGACGCCATGTTGAAAGAAAAAGAAAAACAACGTGAGAGA
ATGAAACAAGAAAAAATGCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTT
GAATCGTGGGAAAAACAATAATTTTGATAGCCTGGATTCCGGTCAACCAA
CTGGTAACCAGTCTAGAGATCCATCTGCAGAACGTTCAATTCCAAATGTA
CCAGACAATGCACATGTTGATTCAACGTCAGGTAGAACTTCAGTAACTGG
ACTTAATATAAGAGATCGTTTGAGTGGTAAACATAAAGAAAGACAGAAAT
TTATAGGTGATTCTACAGACCCTGATGGTGAATACCATCAAGGGGGACCC
TCTACTAGTGGCCCTCGTATTAGAGACAGATTCAACAGAGCCATGAACGA
GTTCGTTGATGATGTCAAACATACAACACACTCTGCGATTCAAGCTATTT
CTATTTCCAAACCGACTGAGACGTCTTGGGGACCGGCTCAAGTTCAAGTT
GATGATGACTCTGACCCCATACTTCAACAAATTCAAATTATTGAGAGTTA
TATTAAACAGGCTCGTGATGACGGACGTTGGGAAGAAGTGAAAATGTTTG
AACAGAATTTACAAGAACTACACATGGTTCGCCAGGCTGATAGGTAGCCC
TCCTGGGTTTCGATTTTTTGGTTTTATTACTGGTTCATAATAGGGGGAAG
GTATGCACCAGCGGGAAACTTATATATTCTTATAGCTCCTGAAGAAATCA
TCTTCAGGCATGATTTTCTTTTCGCACACCTTTGATCATAATCACATTTA
TGGCATTAATGTGTCATAAAGATTGGCACTTTTAGTTTTCAGTACGATTT
TAATATTAGAAATTTCTGTTTAAATAATCTGTTCATATTCCTCATCAAAG
TCTAAGATTAGAAAAGTTTACCCAAATAACTTAAAACGAGCTGGTATGAC
CCAAACCTTTTTCAATATACTTTTAACTTATCTACAGTAATAATTATTCT
GTTTGTAAATTTCATTTTCTTCCATTTTTTACCCAAGATTTTCTTTTCAT
ATATTTTTTTATTCAGATTTTTATTTTTCCATACTCTTTTGATTTTAGTG
TGTTTTTTTTAGTTAGTTAAGTTCTTTTTCTTCCCATGATTTTTAATGAA
TTTCTAATGTTTTGTTTTGTTAATCCTAGAGATAAAAATTAAGAATGATA
TGCAATGATATTAAAAAATTGACCGAATGGTTATAATAATAATTTTTAAG
TAGCCTTATTTTAGCCTTGTACCCACTAATTTTACCCTCCCGAAATGATA
AAAAAAGTCATATTTAAAGGTGGCAAAAAACATAATTATAGTCCCCTCCC
TTATTTGTAACCTCCCTCTTTGATAAGGCACCATTATTTTAATAATTTAG
TAGGTTATTTTATGTTTATGTAGAAATGTGTAATTATAGGTCCAATAGCT
AAAGTAACAAACTGGAAAAAGCGAACNACGTTCTTTGATGCTTTACTTTG
TTTCAGTAAACACATACAACAGCTAGGCATCGGAACTAATAAAGAACCAG
GACCCCGTGCGCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGCATCAAGC
TATCTAGCAGACAACATGTTTACGTTACCAGGGTTACCCTCCCAAGATAA
ATATGACGCCATGTTGAAAGAAAAAGAAAAACAACGTGAGAGAATGAAAC
AAGAAAAAATGCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAATCGT
GGGAAAAACAATAATTTTGATAGCCTGGATTCCGGTCAACCAACTGGTAA
CCAGTCTAGAGATCCATCTGCAGAACGTTCAATTCCAAATGTACCAGACA
ATGCACATGTTGATTCAACGTCAGGTAGAACTTCAGTAACTGGACTTAAT
ATAAGAGATCGTTTGAGTGGTAAACATAAAGAAAGACAGAAATTTATAGG
TGATTCTACAGACCCTGATGGTGAATACCATCAAGGGGGACCCTCTACTA
GTGGCCCTCGTATTAGAGACAGATTCAACAGAGCCATGAACGAGTTCGTT
GATGATGTCAAACATACAACACACTCTGCGATTCAAGCTATTTCTATTTC
CAAACCGACTGAGACGTCATGGGGACCGGCTCAAGTTCAAGTTGATGATG
ACTCTGACCCCATACTTCAACAAATTCAAATTATTGAGAGTTATATTAAA
CAGGCTCGTGATGACGGACGTTGGGAAGAAGTGAAAATGTTTGAACAGAA
TTTACAAGAACTACACATGGTTCGCCAGGCTGATAGGTAGCCCTCCTGGG
TTTCGATTTTTTGGTTTTATTACTGGTTCATGATATTAAGGGGAAGGTAT
GCACCAGCGGGAAACTTATATATTCTTATAGCTCCTGAAGAAATCATCTT
CAGGTATGATTTTCTTTTCGCACACCTTTGATCATATTAACATCTATGAC
ATTGATGTGTCATAAGGATTGGCACTTTTAGTTTTTAGTACAATCTTAAT
AATAGAAATTTATTTTTAAATAATCTGTTCATATTCCTCATCAAAGTCTA
TGATTAGAAAAGTCTACCTAAATAACCTAAAACGAGCTGTTATGACCCAA
ACCTTTTTCAATATACTTTTACCTTATCTATAGTAATAATTATTCTGTTT
GTAAATTTCATATTCTTCCATTTTTTACCCAAGATTTTCTTTTCATATAT
TTTTTTATTCAGATTTTTATTTTTTCATTCTTTTGATTTTAGTGTTTTCG
TTAGTTTAGTTGTTTTTCTTCCGATGATTTTTAATGAATTTCTAATGTTT
TGTTTAGTTAATCCTAGAGATAAAAATTAAGAATGATATGCAATGATA

Coding sequence (CDS) from alignment at scaffold_433:462795..469592-

>TCONS_00065217 ID=TCONS_00065217|Name=TCONS_00065217|organism=Clytia hemisphaerica|type=CDS|length=9072bp|location=Sequence derived from alignment at scaffold_433:462795..469592- (Clytia hemisphaerica)
TAAACACATACAACAGCTAGGCATCGGAACTAATAAAGAACCAGGACCCC
GTGCGCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTA
GCAGACAACATGTTTACGTTACCAGGGTTACCCTCCCAAGATAAATATGA
CGCCATGTTGAAAGAAAAAGAAAAACAACGTGAGAGAATGAAACAAGAAA
AAATGCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAA
AACAATAATTTTGATAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTC
TAGAGATCCATCTGCAGAACGTTCAATTCCAAATGTACCAGACAATGCAC
ATGTTGATTCAACGTCAGGTAGAACTTCAGTAACTGGACTTAATATAAGA
GATCGTTTGAGTGGTAAACATAAAGAAAGACAGAAATTTATAGGTGATTC
TACAGACCCTGATGGTGAATACCATCAAGGGGGACCCTCTACTAGTGGCC
CTCGTATTAGAGACAGATTCAACAGAGCCATGAACGAGTTCGTTGATGAT
GTCAAACATACAACACACTCTGCGATTCAAGCTATTTCTATTTCCAAACC
GACTGAGACGTCATGGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTG
ACCCCATACTTCAACAAATTCAAATTATTGAGAGTTATATTAAACAGGCT
CGTGATGACGGACGTTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACA
AGAACTACACATGGTTCGCCAGGCTGATAGGTAGTGCAGGCGAAACAGAG
TATAGCTTACAATTGGCAATGGAGACACGTCACAAACTTTTAAAACAGTA
TGAAACTATTGAGAGTCTCAGCGAATGAAATCGGCAATGCAAAATGCAGA
CTTGATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAAGCAAAATA
AAGTGTTCCAAGATAAAACAGCCAATGAACTTTTAGTGAAGTCATATGAG
ACAGCGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCACAAATGATG
TTGAAAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGCATCAGATG
CTTAAACTTACTCGAAAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAA
GACAAAGAAGTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAAC
ATTCAGAAGAACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACT
GCATTGATTTCTTAGAGCCCAGCCTTGCTAATGAAAGCACGTAAAATAAA
CACATACAACAGCTAGGCATCGGAACTAATAAAGAACCAGGACCCCGTGC
GCGAAAGTTGCAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAG
ACAACATGTTTACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCC
ATGTTGAAAGAAAAAGAAAAACAACGTGAGAGAATGAAACAAGAAAAAAT
GCTACAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACA
ATAATTTTGATAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGA
GATCCATCTGCAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGT
TGATTCAACGTCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATC
GTTTGAGTGGTAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACA
GACCCTGATGGTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCG
TATTAGAGACAGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCA
AACATACAACACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACT
GAGACGTCATGGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCC
CATACTTCAACAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTG
ATGACGGACGTTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAA
CTACACATGGTTCGCCAGGCTGATAGGTAGTGCAGGCGAAACAGAGTATA
GCTTACAATTGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAA
ACTATTGAGAGTCTCAGCGAATGAAATCGGCAATGCAAAATGCAGACTTG
ATTCAACCAAAGTTTCTCAAGATGGCTGACTCTGTCAAGCAAAATAAAGT
GTTCCAAGATAAAACAGCCAATGAACTTTTAGTGAAGTCATATGAGACAG
CGTGATAGCATTGACGCATGGTAAAGGTGCTTCTTCACAAATGATGTTGA
AAGAGACAAAAGATCCAGAGGATGGCTTGAAAACATGCATCAGATGCTTA
AACTTACTCGAAAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACA
AAGAAGTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTC
AGAAGAACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCAT
TGATTTCTTAGAGCCCAGCCTTGCTAATGAAAGCACGTAAAATAAACACA
TACAACAGCTAGGCATCGGAACTAATAAAGAACCAGGACCCCGTGCGCGA
AAGTTGCAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAA
CATGTTTACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCATGT
TGAAAGAAAAAGAAAAACAACGTGAGAGAATGAAACAAGAAAAAATGCTA
CAAGCTGCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAA
TTTTGATAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATC
CATCTGCAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGAT
TCAACGTCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTT
GAGTGGTAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACC
CTGATGGTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATT
AGAGACAGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACA
TACAACACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGA
CGTCATGGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATA
CTTCAACAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGA
CGGACGTTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTAC
ACATGGTTCGCCAGGCTGATAGGTAGTGCAGGCGAAACAGAGTATAGCTT
ACAATTGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTA
TTGAGAGTCTCAGCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTC
AACCAAAGTTTCTCAAGATGGCTGACTCTGTCAAGCAAAATAAAGTGTTC
CAAGATAAAACAGCCAATGAACTTTTAGTGAAGTCATATGAGACAGCGTG
ATAGCATTGACGCATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGA
GACAAAAGATCCAGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACT
TACTCGAAAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGA
AGTCAAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAA
GAACACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCATTGAT
TTCTTAGAGCCCAGCCTTGCTAATGAAAGCACGTAAAATAAACACATACA
ACAGCTAGGCATCGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGT
TGCAAGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATG
TTTACGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCATGTTGAA
AGAAAAAGAAAAACAACGTGAGAGAATGAAACAAGAAAAAATGCTACAAG
CTGCTAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTT
GATAGCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATC
TGCAGAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGATTCAA
CGTCAGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGT
GGTAAACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGA
TGGTGAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAG
ACAGATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACATACA
ACACACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTC
ATGGGGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTC
AACAAATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGA
CGTTGGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTACACAT
GGTTCGCCAGGCTGATAGGTAGTGCAGGCGAAACAGAGTATAGCTTACAA
TTGGCAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTGA
GAGTCTCAGCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACC
AAAGTTTCTCAAGATGGCTGACTCTGTCAAGCAAAATAAAGTGTTCCAAG
ATAAAACAGCCAATGAACTTTTAGTGAAGTCATATGAGACAGCGTGATAG
CATTGACGCATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACA
AAAGATCCAGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACTTACT
CGAAAGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAAGTC
AAATTTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAAGAAC
ACATTGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCATTGATTTCT
TAGAGCCCAGCCTTGCTAATGAAAGCACGTAAAATAAACACATACAACAG
CTAGGCATCGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGTTGCA
AGCGTCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATGTTTA
CGTTACCAGGGTTACCCTCCCAAGATAAATATGACGCCATGTTGAAAGAA
AAAGAAAAACAACGTGAGAGAATGAAACAAGAAAAAATGCTACAAGCTGC
TAAAAGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTTGATA
GCCTGGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATCTGCA
GAACGTTCAATTCCAAATGTACCAGACAATGCACATGTTGATTCAACGTC
AGGTAGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGTGGTA
AACATAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGATGGT
GAATACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAGACAG
ATTCAACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACATACAACAC
ACTCTGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTCATGG
GGACCGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTCAACA
AATTCAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGACGTT
GGGAAGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTACACATGGTT
CGCCAGGCTGATAGGTAGTGCAGGCGAAACAGAGTATAGCTTACAATTGG
CAATGGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTGAGAGT
CTCAGCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACCAAAG
TTTCTCAAGATGGCTGACTCTGTCAAGCAAAATAAAGTGTTCCAAGATAA
AACAGCCAATGAACTTTTAGTGAAGTCATATGAGACAGCGTGATAGCATT
GACGCATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACAAAAG
ATCCAGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACTTACTCGAA
AGACGTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAAT
TTTGTCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAAGAACACAT
TGTCGATTATGTGGTCAGGTTTACTGTATAAACTGCATTGATTTCTTAGA
GCCCAGCCTTGCTAATGAAAGCACGTAAAATAAACACATACAACAGCTAG
GCATCGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGTTGCAAGCG
TCAATCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATGTTTACGTT
ACCAGGGTTACCCTCCCAAGATAAATATGACGCCATGTTGAAAGAAAAAG
AAAAACAACGTGAGAGAATGAAACAAGAAAAAATGCTACAAGCTGCTAAA
AGTAAAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTTGATAGCCT
GGATTCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATCTGCAGAAC
GTTCAATTCCAAATGTACCAGACAATGCACATGTTGATTCAACGTCAGGT
AGAACTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGTGGTAAACA
TAAAGAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGATGGTGAAT
ACCATCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAGACAGATTC
AACAGAGCCATGAACGAGTTCGTTGATGATGTCAAACATACAACACACTC
TGCGATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTCATGGGGAC
CGGCTCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTCAACAAATT
CAAATTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGACGTTGGGA
AGAAGTGAAAATGTTTGAACAGAATTTACAAGAACTACACATGGTTCGCC
AGGCTGATAGGTAGTGCAGGCGAAACAGAGTATAGCTTACAATTGGCAAT
GGAGACACGTCACAAACTTTTAAAACAGTATGAAACTATTGAGAGTCTCA
GCGAATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACCAAAGTTTC
TCAAGATGGCTGACTCTGTCAAGCAAAATAAAGTGTTCCAAGATAAAACA
GCCAATGAACTTTTAGTGAAGTCATATGAGACAGCGTGATAGCATTGACG
CATGGTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACAAAAGATCC
AGAGGATGGCTTGAAAACATGCATCAGATGCTTAAACTTACTCGAAAGAC
GTTGAGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAATTTTG
TCCAAGTTGTGAGAAGAAATTCACATTAACATTCAGAAGAACACATTGTC
GATTATGTGGTCAGGTTTACTGTATAAACTGCATTGATTTCTTAGAGCCC
AGCCTTGCTAATGAAAGCACGTAAAATAAACACATACAACAGCTAGGCAT
CGGAACTAATAAAGAACCAGGACCCCGTGCGCGAAAGTTGCAAGCGTCAA
TCAGAGCTTTTGCATCAAGCTATCTAGCAGACAACATGTTTACGTTACCA
GGGTTACCCTCCCAAGATAAATATGACGCCATGTTGAAAGAAAAAGAAAA
ACAACGTGAGAGAATGAAACAAGAAAAAATGCTACAAGCTGCTAAAAGTA
AAGTTAGCAGCTTGAATCGTGGGAAAAACAATAATTTTGATAGCCTGGAT
TCCGGTCAACCAACTGGTAACCAGTCTAGAGATCCATCTGCAGAACGTTC
AATTCCAAATGTACCAGACAATGCACATGTTGATTCAACGTCAGGTAGAA
CTTCAGTAACTGGACTTAATATAAGAGATCGTTTGAGTGGTAAACATAAA
GAAAGACAGAAATTTATAGGTGATTCTACAGACCCTGATGGTGAATACCA
TCAAGGGGGACCCTCTACTAGTGGCCCTCGTATTAGAGACAGATTCAACA
GAGCCATGAACGAGTTCGTTGATGATGTCAAACATACAACACACTCTGCG
ATTCAAGCTATTTCTATTTCCAAACCGACTGAGACGTCATGGGGACCGGC
TCAAGTTCAAGTTGATGATGACTCTGACCCCATACTTCAACAAATTCAAA
TTATTGAGAGTTATATTAAACAGGCTCGTGATGACGGACGTTGGGAAGAA
GTGAAAATGTTTGAACAGAATTTACAAGAACTACACATGGTTCGCCAGGC
TGATAGGTAGTGCAGGCGAAACAGAGTATAGCTTACAATTGGCAATGGAG
ACACGTCACAAACTTTTAAAACAGTATGAAACTATTGAGAGTCTCAGCGA
ATGAAATCGGCAATGCAAAATGCAGACTTGATTCAACCAAAGTTTCTCAA
GATGGCTGACTCTGTCAAGCAAAATAAAGTGTTCCAAGATAAAACAGCCA
ATGAACTTTTAGTGAAGTCATATGAGACAGCGTGATAGCATTGACGCATG
GTAAAGGTGCTTCTTCACAAATGATGTTGAAAGAGACAAAAGATCCAGAG
GATGGCTTGAAAACATGCATCAGATGCTTAAACTTACTCGAAAGACGTTG
AGAAAACTTGTGTTCCATGGCAAGAAGACAAAGAAGTCAAATTTTGTCCA
AGTTGTGAGAAGAAATTCACATTAACATTCAGAAGAACACATTGTCGATT
ATGTGGTCAGGTTTACTGTATAAACTGCATTGATTTCTTAGAGCCCAGCC
TTGCTAATGAAAGCACGTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040888XLOC_040888Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065217-proteinTCONS_00065217-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065217-exon-scaffold_433-1575043694:469403..469592TCONS_00065217-exon-scaffold_433-1575043694:469403..469592Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:468822..468983TCONS_00065217-exon-scaffold_433-1575043694:468822..468983Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:467967..468084TCONS_00065217-exon-scaffold_433-1575043694:467967..468084Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:467567..467624TCONS_00065217-exon-scaffold_433-1575043694:467567..467624Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:467397..467467TCONS_00065217-exon-scaffold_433-1575043694:467397..467467Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:466085..466171TCONS_00065217-exon-scaffold_433-1575043694:466085..466171Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1575043694:462795..464136TCONS_00065217-exon-scaffold_433-1575043694:462795..464136Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:469403..469592TCONS_00065217-exon-scaffold_433-1510915933:469403..469592Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:468822..468983TCONS_00065217-exon-scaffold_433-1510915933:468822..468983Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:467967..468084TCONS_00065217-exon-scaffold_433-1510915933:467967..468084Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:467567..467624TCONS_00065217-exon-scaffold_433-1510915933:467567..467624Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:467397..467467TCONS_00065217-exon-scaffold_433-1510915933:467397..467467Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:466085..466171TCONS_00065217-exon-scaffold_433-1510915933:466085..466171Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1510915933:462795..464136TCONS_00065217-exon-scaffold_433-1510915933:462795..464136Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:469403..469592TCONS_00065217-exon-scaffold_433-1491911889:469403..469592Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:468822..468983TCONS_00065217-exon-scaffold_433-1491911889:468822..468983Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:467967..468084TCONS_00065217-exon-scaffold_433-1491911889:467967..468084Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:467567..467624TCONS_00065217-exon-scaffold_433-1491911889:467567..467624Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:467397..467467TCONS_00065217-exon-scaffold_433-1491911889:467397..467467Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:466085..466171TCONS_00065217-exon-scaffold_433-1491911889:466085..466171Clytia hemisphaericaexon
TCONS_00065217-exon-scaffold_433-1491911889:462795..464136TCONS_00065217-exon-scaffold_433-1491911889:462795..464136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:462795..469592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4991	3.18467	1.17862	0.452445	2.18301	1.34998	1.51942	2.50683	1.1442	1.11551	0.761614	1.00865	0.723324	0.511501	0.772645	0.618518	1.16439	1.12118	0.37223	0.538676	0.801062	0.719986	3.10909	3.37044	2.90763	2.23643	0.467612	0.568592	2.30622	1.88158
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR021565Rbsn_Rab_binding_dom
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
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BLAST of TCONS_00065217 vs. Swiss-Prot (Human)
Match: RBNS5 (Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.062e-35
Identity = 77/240 (32.08%), Postives = 128/240 (53.33%), Query Frame = 1 
Query:  187 KNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINCIDFLEPSLANSVIAL------THGKGASS------------------QMMLKETKDPEDGLKTCIRCLNLLERQNKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSVNAGETEYSLQLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFASSYLADNMFTLPGLPSQDKY 834
            + +EK+ VPW  D++V FCP C  KF++  RR HCRLCG + C  C++ +   LAN + +       TH   + S                    +L E  D  D ++ C  C + L ++ +   +K     +VK YE+++  M+  D   P++++MA S+NAGET YSL+ A + R ++ K YE I++LSK I  LG+  +  P P   +LQ  IR  A+ ++ + +  L  LP+++++
Sbjct:  145 RAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDD--DRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMAASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRYSATLFVQEKLLGLMSLPTKEQF 382
The following BLAST results are available for this feature:
BLAST of TCONS_00065217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBNS53.062e-3532.08Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2[more]
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