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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065200 ID=TCONS_00065200|Name=TCONS_00065200|organism=Clytia hemisphaerica|type=transcript|length=286bp
AACACTTTTCTTTTTCCAATAAAAATTGTATTAGAAcaagaataagaaca
atttaagaacaatgctaagTCTTGAATTGCTAAAGTTTAAGCAAATATCA
AAGGTCAAGCTAGTAAAAATAAGGCATTAAACCTAAATAACaTCAGTTTA
CCCTAAAATAAGAGCAAGaaaatttgaggctcaaagtgcaaaaaagaaat
aagataATAATAATAGTAAAAAGAACAACCTCACAAAAAATATACTGGCT
CTGATAAAAAGAAATTATCTAGATTTTCGTTAAAGG Run BLAST on NCBI transcript from alignment at scaffold_433:235950..237585- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065200 ID=TCONS_00065200|Name=TCONS_00065200|organism=Clytia hemisphaerica|type=transcript|length=1636bp|location=Sequence derived from alignment at scaffold_433:235950..237585- (Clytia hemisphaerica)
AACACTTTTCTTTTTCCAATAAAAATTGTATTAGAACAAGAATAAGAACA
ATTTAAGAACAATGCTAAGTCTTGAATTGCTAAAGTTTAAGCAAATATCA
AAGGTCAAGCTAGTAAAAATAAGGCATTAAACCTAAATAACATCAGTTAA
ATACCCTAAAATTAAGCAGGGGGGGTCAGGGTCCAGGATACCAACCCAGG
GCCCAAAAACCTGACTTTTCGAGATTTGAAAGTAGTAGACACCACCACCC
CCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATGCAAAAAGTTATATGCATAAGA
TACTGCATACAAGGGACGCTAAACAGAATCTGTGGATGTTTTTATTCAAA
GAACATTCCTCTTATGAATCACTTATGTACCACACTTTAGACTCCTGAAA
GTGAAAACAAGTTTTTCTCATTCTAACACAACGTAAATTAAGTTTTTTGA
ACTAAATTGGCAAAATGTATAAAGTTCATAAAACAAGTTGATAAACTAGA
CTAGATAAAAATTTCATTGTATTAGGCACGCCTAGAGTCTTTGTAACATT
ATCCTATATGATGAGCGCCCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCGCCACTGCTTACTCCACCCAAATTTATCACGCCT
CTCCTAAACTATTCCCTTTTCTATTGATCTTGTGTAGACGATAGGATCTT
TGTAGTGACACAGCGAGTTTTAGTAGAGATCACCTAAACTTTTTTAATGG
GAAAATTGACTCAAAGGGAAACTAGGGGAACTTTTTCTAAAAAAGCTAAA
ATATTTTTGTAGATCATTTATTGAGCTCCTTGAAGTAGTTAATTTTTCAG
TATATTATTTTATGATACATTACACCTTTTCAGACTTTTGAATGCTTTTT
CTTTCAAATGCTTGAAATTTAGCTGAAAATATCCTGAGGCTAACATTGTT
TTTTAATTGTCTAGAAACACTTTTCTTTTTCCAATAAAAATTGTATTAGA
ACAAAAATAAGAACAATTTAAGAACAATGCTTAGTCGAAAATGGCCGAAA
TTTAAGCAAATATTTTTAAAGGTCAAATTTGTAAAAATAACATCAGTTTA
CCCTAAAATAAGAGCAAGAAAATTTGAGGCTCAAAGTGCAAAAAAGAAAT
AAGATAATAATAATAGTAAAAAGAACAACCTCACAAAAAATATACTGGCT
CTGATAAAAAGAAATTATCTAGATTTTCGTTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065200-exon-scaffold_433-1575043694:237445..237585 | TCONS_00065200-exon-scaffold_433-1575043694:237445..237585 | Clytia hemisphaerica | exon |
| TCONS_00065200-exon-scaffold_433-1575043694:235950..236094 | TCONS_00065200-exon-scaffold_433-1575043694:235950..236094 | Clytia hemisphaerica | exon |
| TCONS_00065200-exon-scaffold_433-1510915933:237445..237585 | TCONS_00065200-exon-scaffold_433-1510915933:237445..237585 | Clytia hemisphaerica | exon |
| TCONS_00065200-exon-scaffold_433-1510915933:235950..236094 | TCONS_00065200-exon-scaffold_433-1510915933:235950..236094 | Clytia hemisphaerica | exon |
| TCONS_00065200-exon-scaffold_433-1491911889:237445..237585 | TCONS_00065200-exon-scaffold_433-1491911889:237445..237585 | Clytia hemisphaerica | exon |
| TCONS_00065200-exon-scaffold_433-1491911889:235950..236094 | TCONS_00065200-exon-scaffold_433-1491911889:235950..236094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:235950..237585 - |
Blast
The following BLAST results are available for this feature:
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