TCONS_00065192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065192
Unique NameTCONS_00065192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065192 ID=TCONS_00065192|Name=TCONS_00065192|organism=Clytia hemisphaerica|type=transcript|length=1014bp
CTAAAATGTCGTATGAAAAACGCGCGAAAATTTGTTGATAATCCTTTTCC
CTTTCGATAGTTTTCGAGATAAGTCACGCATTCGTTTTCACCAACAAAAA
GATAAAACATGTACTCCGTTCTTGTTTGGACATTAAAAGGTAATGAAGAG
CTAAAGCCTGCCTTGGTGGAGGTAATGAAGTCCAATGATATTGTATCCAT
CAACGGCAAAGTTTTTTACAAACATCAGGGGTGTCAGTATGAAGGAAGAG
AAGAATCTTACTTTGAAACTCGACAGCAAGCGTTAAAGCGAGCTGAAGTT
GTTAAGGGTATTGAAAGCTTAAAATGTGATAGCCGGCCGAAACGTCGATT
AATACCAAAACGATTTctagaagaaggagaagaagaagaagcagaaGAAC
AACAAGAAGAAGAGCTGCAAAATGCTGTTGTTTTATGTGAAATTGATGTG
ACCAcccctcaaaagaaaaaaaagaaacgaaTTGCAAACACTCAGAAAGC
taaaaaacaaacacagaaaGCATCAAAACCCTCAAAGAAGGTTGATCAAA
ATCAGGATGGTTTGTCTCGTTTGGTTAAAACAATACATCCAGAAAAAGTA
GTAGAAGAATGTACATTCTCAGATATCCTGAAAACTATCAATCCAAGCAT
taatgatTTGTCCACTTCGACAGGGGTAACAAACCGTAATACTTCCACTT
TGACAGGGGCAATGCGTCGTAATGAAAAACAGagagATACATCCACCTTG
ACAGGGGCAATGAGCCATGATACGTCCACCTGGACAGGGGCAATGAGCCA
TAATGAAAAACAgGATACTAGCTTCACATTTTCAAGTGACGAAGACGAGA
ACGATGAAAATGTGCCGGTAAATTCTTGTTATTTTCTTTGTATGGTATAA
TTTGACACAGAGTTGAACACTTAGCTGCACGAATTTTGTCATCTACTTGA
CAAAAACGCAATGTTTGgcaataaaaaatgttatttctcATAAACGGGCT
TAAATTGGATAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_433:10912..17469-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065192 ID=TCONS_00065192|Name=TCONS_00065192|organism=Clytia hemisphaerica|type=transcript|length=6558bp|location=Sequence derived from alignment at scaffold_433:10912..17469- (Clytia hemisphaerica)
CTAAAATGTCGTATGAAAAACGCGCGAAAATTTGTTGATAATCCTTTTCC
CTTTCGATAGTTTTCGAGATAAGTCACGCATTCGTTTTCACCAACAAAAA
GATAAAAGTAAGTTGAAAATGCATTGAATATATATAGAATAAAGGCTCAT
TGAAACAAGGAAAATCACATAGTCTATTTTATAAAAAGTGGTACAAAATA
GATTATTTCCATTTGTATTCGATCATTCCGATTTTTCATCTTGCAGTCAG
GCAAATCCTAATAATCCTTGCATTTATGCACGGGAGCGAGATCCAATACT
ACGTTGCAAATAATGGTTCTAAAGCTCTAAATTTACATGAAAGGAATGTT
AGTCTCACACACTTATTTATTACCACACTACTTTCACGCATTTTCGACCA
TGGAGGTAGAAAGAAAGCAGGAGATGAATGTATTTTTCCCTCTCTGATTG
CTGTTCAAAATCTATTGCATTGTAAGCGTTGTCCTTTGATTTTCCAGGCT
TGCCCGATAGCTCACTCCATTTCACTGGATGTGTCAACATTTATAAAGAA
AATTGTTCAAATTATTTGGGAGAAATTATGATATAAATTGGCTCTTAATT
AGCTTTAAATCCCTTTAAAGTTATATTAAGTATGAAATGATCAAGTCTGC
TTGCTTGTAAATTATAATTTAACTTAAAAAAGTGAATTTTTACTTGCATA
AGACAGCCATAAACATTTTGAAAGACAACAAACTTTACATGCTACTTTCA
TAAACTATTAGCTTGGAGGATTTTGGAGGAAACTAAAATTTATTTGTCTT
TTAGCTTGATCATTTTCTGAAAAAATAAATATAAAATATCCAGGATTGCG
AATAAGTTTATAGAGTTAAAACTAAAGGGTCTTGACATCAAGCGATTTCA
TTTCACAATGGAAATTCTTTCATAGTTGCGCCAAGTGTCCCGCATTAAGC
GGGACATGTATGCAAATCGACCATTTTTCCCACTGTACGTTCGCATTGCC
TGTATCCCGCATTTCAAAAACCTATAAAAATGCGCTAAAAGTCAGGCAAA
AATTACAAAAATCAACCCAATAATCGAAAAAGTACCTAATAAATTTTAAT
CAAAACTAATTGAAAAAGAATATTGAAAAATTTGATTAGGTTGAAGAGTA
TTTGATTATTTTTGATGGATTCATTCGATTAAGAATCAAATTTATTGCAT
TTATTTACTTTGTTTTCAGCATGTACTCCGTTCTTGTTTGGACATTAAAA
GGTAATGAAGAGCTAAAGCCTGCCTTGGTGGAGGTAATGAAGTCCAATGA
TATTGTATCCATCAACGGCAAAGTTTTTTACAAACATCAGGGGTGTCAGT
ATGAAGGAAGAGAAGAATCTTACTTTGGTATGTAAATTTTGCACCTATCT
GAGGTGTTCTAAGATAATAACGGTTTCCAATTACCTGAAAAGAAATATTC
CAGTTTTGAGAAAAGGAAGTTAAAGATGGAGGGAAAATTCCCTGATTTTG
AATTTTGAGAAATCAGATTGTCATAATAGTTAAGATTCAAAACTAGTGTA
CGATCAGGGGCTATTTCGTAATGAAAACTACTCTTTATGTGCTTTAATTC
ACGTTTTTATATTATGTTTGTGTTTAAATTTGTTTTCAGAAACTCGACAG
CAAGCGTTAAAGCGAGCTGAAGTTGTTAAGGGTATTGAAAGCTTAAAATG
TGATAGCCGGCCGAAACGTCGATTAATACCAAAACGATTTCTAGAAGAAG
GAGAAGAAGAAGAAGCAGAAGAACAACAAGAAGAAGAGCTGCAAAATGCT
GTTGTTTTATGTGAAATTGATGTGGTAATTGTTCAGAAAATATTTTATTA
CATTAAAGCATGGTTTCCACCAGTGCGATAAGGGATCTTAAATTGGTGAG
AACTTATTTTGGCCAAAATAAAAGAAATTGCCCATTCGACAAGATAAGTT
TTAGGATTTTTGCTGCTCCCTAAAATTAGTTCTCTCCAAAATAAAACTCC
CTTAAATGTAATTATTGATGGCGGTCATTTGTTTTTTGCAAACTTGAGTT
AAAATGAAACATTCAACATGATAAGCGTAATCTGAAAAGAATCCAAAATT
TTGAGTGAAGACCGGCTGTGACATCAATTTTTGTAATGGAATGTTTGTGT
CAATCTTTTCAAGTGAAAACAAAAAGTTGTTGTGAGTTGAAAAGGGTTTC
ATAATATACAAAATAGGCAAACTTTGGTAATCTATATACTAACTGTTTGT
TTTGGAATACTGTAAATATTGACATCTTTCAAACATATTGCCCTCACAAG
CTTGCGTTCATACTTTATGACATCTGTCAATATTTTACAGTTTTGCCCTT
ATTATTACAATTTTTTTAGTTTATTTTTTAAGTCAGGACCAATAGTAATA
TCAGTTATTTGTAACTGTCTGCATTATCCTGTAAAAATATTCAATAAAAA
AAACAAAATCAAAACAGTTAGTATAGGGTTAAGCAGGGTTAGGACATTAA
TTCTGTTTTTTTTTTTGAAAGATGACCCGTAATGCAAAAAAGGATCTAAA
ATGGATGTAGTAAATGAAGTTTATATTCTATTAACATACCCTTGCTTTTT
ATAATTATAGACCACCCCTCAAAAGAAAAAAAAGAAACGAATTGCAAACA
CTCAGAAAGCTAAAAAACAAACACAGAAAGTAAGTAAAAGTACACTACAG
TTGCTGCTCTCTAATTTGATTTTCAAGAGGATTGAATTTTCATCCCTAAT
CTAATAAACACAAATTAAATAAATGAATTATAGAGCAAGGGAAGAAGAAT
ACTACAAAAAAAGATTGGTAACATAAAATACAACAAATAATGTGTTATTT
ACAATAGTTTCTTAAAAAAAATGACTGAGAGCTTGAATTTAATCAAATAC
TGGAGCTTATCAAATGATAGGATGTTGAATTAGAGTCTCAACTAAAAATT
TAGATAATTTAATTTTTAATTTAATTCAGGCATCAAAACCCTCAAAGAAG
GTTGATCAAAATCAGGATGGTTTGTCTCGTTTGGTTAAAACAATACATCC
AGAAAAAGTAAGCTTTACATTTCATCACTGGTGGCCTGGTAAGGGTGCAC
TGTTAGGTGGATCAATTTTTGGAATGGATTTAAGAGGCTCCTAACAGACC
TAAAAATCTAAAATTAGCGAGTTGGGGGCGTTTATTTGGCACCAAGAGTA
TTGTCCTTGGCCTTATGGGGTAGGTTTCAATTTTTAAAGATCAACCAGTG
TTTATACAGATCTTATCACTCATTTTAGTTAATTTTGTTTATCAGGTAGT
AGAAGAATGTACATTCTCAGATATCCTGAAAACTATCAATCCAAGCATTG
TAAGAATTTCTTTTGTACACAAGTATTACTCTTGGATACCTAATAGATGG
GGATAGGAATAAGCAGGGGGTTAAAAAATCTCAAAACTTAGTAAACAGAG
AGGTTGGGATTAAAATTTGCAGGGTGGAAAATATGGAAAAGGCAGCTAAT
CTATATTATAATACCCAAAAATCAAAACTATCCAATTCTTGCATCATGCT
TTTTCGCTTTTTAAAGCACACAGCATTTTTTCCCGAATTTTAGTATGTAG
GGGCAATGAGCCATAATACATATCTTCAGTAAAATGTGGGTTATTGACAC
TTTCTACTACAGGCAAGGTTAATTTCTTGGGAAACCGCTCGTGCAATTTG
ATTGCACTTTGGTCGTGAAATTAATTCTAACTTGCCCTCCTTCCTACGAT
TATTAGAACCAATTATTTTCTTTTTTAGAATGATTTGTCCACTTCGACAG
GGGTAACAAACCGTAATACATCCACTTTGACAGGGGCAACGAACCGTGAT
ACATCCACTTTGACAGGGGCAACGAACCATGCTACATCCCCTTCGACAGG
GGGAACGAACCATGCTACATCCCCTTCGACAGGGGCAACGAACCGTGATA
CATCCACTCCGACAGGGGCAATGAACCGTGATACATCCACTTCGACAGGG
GCTATGAACTATAATACTTCCACTTTAACAGGGGCAATGAGTCGTAATGA
AAAACATGTGAATATCATTATTTTTTTCCTACAATTGATAGAACATTTGA
ATATGTACTAGTAATAACATGGTTTAGAGGGTGATTTGGGATTAATAACC
CCGAGGTTCATTGAAAATATTTAAAAATAGCTCGAACGTAGTGAAAACTA
TAAAAAACATTCGACTGACACGCTTATTTTGATTGGCTTAAAAATTTTAT
ACAATATTTTGTTAACCAATCAAAATATCGTACGATACTTTTCTTTCAAC
CAATAGAAATTTTTGTTTACATCAGGGTGATTACAAAAAAGCGGGCTATT
ACGGATTTATCGCCCTGCTCGTCCTTTACAAATCTAAGCTAAATGTAATC
AACCATATAATTAGGGTCAGTAAAATGCTTGAGTTATTGACACTTTATAC
TAGAAGCAAGGTTAATTTCTTGGGAAAGGGATTTGTAAAATTTAAGACAT
GAAAAGGGTGGTAAGAAAATGTTTTTTTTCCAAAAATGAATAACCTGCTG
TCGCTCGTGCAATTTGACTACACTTTGGTCGTGAAATTAATTCTAGCTTC
TACCCTCCTTCCTATATACGATTATTAGAAGCAATTATTTTCTTTTTTAG
AATGATTTGTCCACCTCGATAGGGGCAACGAACCGTGATTCATCCACTTC
AACAGGGGCAACGAACCATGATTCATCCACTTCGACAGGGGCAACGAACC
ATGATTCATCCACTTCGACAGGGGCGATGAACCGTGATACATCCACTTCG
ACAGGGGCAATGAACTATAATACTTCCACTTTGACAGGGGCAATGCGTCG
TAATGAAAAACAGGTGAATTTTCATTATCTTTTTCCTACAATTGATAGAA
CATTTGAATATGGGTCAGTAAAATGCTTGAGTTATCGACACTTTATACTG
AAAGCACGGTTAATTTCTTGGGAAAGGGATTTGTAAAATTTAAGACATGA
GAAGGGTGGTAAGAAAATGTTGTTTTTTTTCAAAAAAATTAATAACCTGC
TGTCGCTCGTGCAATTTGATTACACTTTGGTCGTGAAATTAATTCTAACT
TGCCCTCCTTCCTATACGATTATCAGTACCAATTATTTTCTTTTTTAGAA
TGATTTGTCCTTTATATGATTCACCTTTATAGCCCTAGCTTTTAAGGTAC
TACCTTAAAAGAAGAAATTTTGGCAGAAAGAAAATTTGAAGGATTTGGAT
TTACTCAAAATCTGCCAAATTAGGCCAAAAAGCCAAAATTAATATTCTCC
ATCATCCGCTAAATTAAATTCCCGCCAAATTTAAATTTTTTTATTGACAT
CCTAAATTTGTGCTATTTCAAGCCTCAAAACTGGTTTTTCGCTTACTTAA
TAACGCTTAATTCGCTAAATTAAATTCTGCCAAATTTTATTTTCTCAGCC
ATCCGTCAAATTAAATTCCCTCCAAAATTTCTTCCTTTAAGGTATTATCA
ATCCAATTATTTTCATTTTTAGAGAGATACATCCACCTTGACAGGGGCAA
TGAGCCATGATACGTCCACCTGGACAGGGGCAATGAGCCATAATGAAAAA
CAGGTGAAATTTTGTTGTTTTTCTCCTACAATTGGTGTCTTGAAGGTAGA
AATTTTGACGGAAAATTTGGTGGATTTGGCGGAGTTAGCACGCACTGTAT
ACTTCAAGTAAGGTGAATTCCTTGAGAGAGGGTTCTGTAAGTTTTAAGAC
ATAGAAAGAATATTTTATCACCATATCAGAATTGGTTTACATTGGCTTTT
TCAGTGTAAGTTTTGATATTACTTTTGCAATCAAGTTTCAATTAAAGGGA
ACGACCGCTTATAAATATAGGGCATTGAGGAAACTGCCAGTTTCTAGGTA
TACTCTGAAATAAGTGCTAACGTCAGCAGGCAATCTAATTGGTTTATCTG
AAATTCGAAAGTTGTTTTGAAACATGTTTATTAAAAAGAAGACATTGCAA
TGCAACGGTAAACAAAAAATCGTTAAAAGGGAAACCCCAAAAAAGCAAGG
ACAAAACTCGAATAAAACAAAACCGAGTATTTTCAGATAAAAAGAGTTAT
ACTTATATTTTTCAATATGATTCATCTCACAAGGGTTTATTTTAAAGCTG
TGGTAATTCTTGTCTCATAAAATGATGAATCCGTTCACTTTCTAAAATGT
ATTTTTCTGATAAGCTCGATTTTGTTTTTTGGGTTTTCCAAAGAGAAGAA
CTGACATTTGTAGTTATTCCCTTTAATCCAATAATTTTTTTAAGTTTTGA
TATTACTTTTGCAATCAAGTTTCAATTAATCCAATAATTTTTTATGGTTT
TCACTAGGATACTAGCTTCACATTTTCAAGTGACGAAGACGAGAACGATG
AAAATGTGCCGGTAAATTCTTGTTATTTTCTTTGTATGGTATAATTTGAC
ACAGAGTTGAACACTTAGCTGCACGAATTTTGTCATCTACTTGACAAAAA
CGCAATGTTTGGCAATAAAAAATGTTATTTCTCATAAACGGGCTTAAATT
GGATAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040869XLOC_040869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065192-exon-scaffold_433-1575043694:17363..17469TCONS_00065192-exon-scaffold_433-1575043694:17363..17469Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:16093..16250TCONS_00065192-exon-scaffold_433-1575043694:16093..16250Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:15646..15830TCONS_00065192-exon-scaffold_433-1575043694:15646..15830Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:14791..14859TCONS_00065192-exon-scaffold_433-1575043694:14791..14859Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:14413..14490TCONS_00065192-exon-scaffold_433-1575043694:14413..14490Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:14121..14174TCONS_00065192-exon-scaffold_433-1575043694:14121..14174Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:13651..13691TCONS_00065192-exon-scaffold_433-1575043694:13651..13691Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:12607..12646TCONS_00065192-exon-scaffold_433-1575043694:12607..12646Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:11867..11947TCONS_00065192-exon-scaffold_433-1575043694:11867..11947Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1575043694:10912..11112TCONS_00065192-exon-scaffold_433-1575043694:10912..11112Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:17363..17469TCONS_00065192-exon-scaffold_433-1510915933:17363..17469Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:16093..16250TCONS_00065192-exon-scaffold_433-1510915933:16093..16250Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:15646..15830TCONS_00065192-exon-scaffold_433-1510915933:15646..15830Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:14791..14859TCONS_00065192-exon-scaffold_433-1510915933:14791..14859Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:14413..14490TCONS_00065192-exon-scaffold_433-1510915933:14413..14490Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:14121..14174TCONS_00065192-exon-scaffold_433-1510915933:14121..14174Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:13651..13691TCONS_00065192-exon-scaffold_433-1510915933:13651..13691Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:12607..12646TCONS_00065192-exon-scaffold_433-1510915933:12607..12646Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:11867..11947TCONS_00065192-exon-scaffold_433-1510915933:11867..11947Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1510915933:10912..11112TCONS_00065192-exon-scaffold_433-1510915933:10912..11112Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:17363..17469TCONS_00065192-exon-scaffold_433-1491911889:17363..17469Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:16093..16250TCONS_00065192-exon-scaffold_433-1491911889:16093..16250Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:15646..15830TCONS_00065192-exon-scaffold_433-1491911889:15646..15830Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:14791..14859TCONS_00065192-exon-scaffold_433-1491911889:14791..14859Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:14413..14490TCONS_00065192-exon-scaffold_433-1491911889:14413..14490Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:14121..14174TCONS_00065192-exon-scaffold_433-1491911889:14121..14174Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:13651..13691TCONS_00065192-exon-scaffold_433-1491911889:13651..13691Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:12607..12646TCONS_00065192-exon-scaffold_433-1491911889:12607..12646Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:11867..11947TCONS_00065192-exon-scaffold_433-1491911889:11867..11947Clytia hemisphaericaexon
TCONS_00065192-exon-scaffold_433-1491911889:10912..11112TCONS_00065192-exon-scaffold_433-1491911889:10912..11112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:10912..17469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00215448	0	0	0.754245	0	0	0.457437	0.041469	0.135102	0.382785	0.394089	0.12812	0.255962	0.264722	0.222789	0	0	0	0	0	0	0.222021	0	0	0.52451	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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