TCONS_00065191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065191
Unique NameTCONS_00065191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065191 ID=TCONS_00065191|Name=TCONS_00065191|organism=Clytia hemisphaerica|type=transcript|length=938bp
TTCTAAAGCTCTAAATTTACATGAAAGGAATCATGTACTCCGTTCTTGTT
TGGACATTAAAAGGTAATGAAGAGCTAAAGCCTGCCTTGGTGGAGGTAAT
GAAGTCCAATGATATTGTATCCATCAACGGCAAAGTTTTTTACAAACATC
AGGGGTGTCAGTATGAAGGAAGAGAAGAATCTTACTTTGAAACTCGACAG
CAAGCGTTAAAGCGAGCTGAAGTTGTTAAGGGTATTGAAAGCTTAAAATG
TGATAGCCGGCCGAAACGTCGATTAATACCAAAACGATTTctagaagaag
gagaagaagaagaagcagaaGAACAACAAGAAGAAGAGCTGCAAAATGCT
GTTGTTTTATGTGAAATTGATGTGACCAcccctcaaaagaaaaaaaagaa
acgaaTTGCAAACACTCAGAAAGCtaaaaaacaaacacagaaaGCATCAA
AACCCTCAAAGAAGGTTGATCAAAATCAGGATGGTTTGTCTCGTTTGGTT
AAAACAATACATCCAGAAAAAGTAGTAGAAGAATGTACATTCTCAGATAT
CCTGAAAACTATCAATCCAAGCATtaatgatTTGTCCACTTCGACAGGGG
TAACAAACCGTAATACTTCCACTTTGACAGGGGCAATGCGTCGTAATGAA
AAACAGagagATACATCCACCTTGACAGGGGCAATGAGCCATGATACGTC
CACCTGGACAGGGGCAATGAGCCATAATGAAAAACAgGATACTAGCTTCA
CATTTTCAAGTGACGAAGACGAGAACGATGAAAATGTGCCGGTAAATTCT
TGTTATTTTCTTTGTATGGTATAATTTGACACAGAGTTGAACACTTAGCT
GCACGAATTTTGTCATCTACTTGACAAAAACGCAATGTTTGgcaataaaa
aatgttatttctcATAAACGGGCTTAAATTGGATAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_433:10912..17153-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065191 ID=TCONS_00065191|Name=TCONS_00065191|organism=Clytia hemisphaerica|type=transcript|length=6242bp|location=Sequence derived from alignment at scaffold_433:10912..17153- (Clytia hemisphaerica)
TTCTAAAGCTCTAAATTTACATGAAAGGAATGTTAGTCTCACACACTTAT
TTATTACCACACTACTTTCACGCATTTTCGACCATGGAGGTAGAAAGAAA
GCAGGAGATGAATGTATTTTTCCCTCTCTGATTGCTGTTCAAAATCTATT
GCATTGTAAGCGTTGTCCTTTGATTTTCCAGGCTTGCCCGATAGCTCACT
CCATTTCACTGGATGTGTCAACATTTATAAAGAAAATTGTTCAAATTATT
TGGGAGAAATTATGATATAAATTGGCTCTTAATTAGCTTTAAATCCCTTT
AAAGTTATATTAAGTATGAAATGATCAAGTCTGCTTGCTTGTAAATTATA
ATTTAACTTAAAAAAGTGAATTTTTACTTGCATAAGACAGCCATAAACAT
TTTGAAAGACAACAAACTTTACATGCTACTTTCATAAACTATTAGCTTGG
AGGATTTTGGAGGAAACTAAAATTTATTTGTCTTTTAGCTTGATCATTTT
CTGAAAAAATAAATATAAAATATCCAGGATTGCGAATAAGTTTATAGAGT
TAAAACTAAAGGGTCTTGACATCAAGCGATTTCATTTCACAATGGAAATT
CTTTCATAGTTGCGCCAAGTGTCCCGCATTAAGCGGGACATGTATGCAAA
TCGACCATTTTTCCCACTGTACGTTCGCATTGCCTGTATCCCGCATTTCA
AAAACCTATAAAAATGCGCTAAAAGTCAGGCAAAAATTACAAAAATCAAC
CCAATAATCGAAAAAGTACCTAATAAATTTTAATCAAAACTAATTGAAAA
AGAATATTGAAAAATTTGATTAGGTTGAAGAGTATTTGATTATTTTTGAT
GGATTCATTCGATTAAGAATCAAATTTATTGCATTTATTTACTTTGTTTT
CAGCATGTACTCCGTTCTTGTTTGGACATTAAAAGGTAATGAAGAGCTAA
AGCCTGCCTTGGTGGAGGTAATGAAGTCCAATGATATTGTATCCATCAAC
GGCAAAGTTTTTTACAAACATCAGGGGTGTCAGTATGAAGGAAGAGAAGA
ATCTTACTTTGGTATGTAAATTTTGCACCTATCTGAGGTGTTCTAAGATA
ATAACGGTTTCCAATTACCTGAAAAGAAATATTCCAGTTTTGAGAAAAGG
AAGTTAAAGATGGAGGGAAAATTCCCTGATTTTGAATTTTGAGAAATCAG
ATTGTCATAATAGTTAAGATTCAAAACTAGTGTACGATCAGGGGCTATTT
CGTAATGAAAACTACTCTTTATGTGCTTTAATTCACGTTTTTATATTATG
TTTGTGTTTAAATTTGTTTTCAGAAACTCGACAGCAAGCGTTAAAGCGAG
CTGAAGTTGTTAAGGGTATTGAAAGCTTAAAATGTGATAGCCGGCCGAAA
CGTCGATTAATACCAAAACGATTTCTAGAAGAAGGAGAAGAAGAAGAAGC
AGAAGAACAACAAGAAGAAGAGCTGCAAAATGCTGTTGTTTTATGTGAAA
TTGATGTGGTAATTGTTCAGAAAATATTTTATTACATTAAAGCATGGTTT
CCACCAGTGCGATAAGGGATCTTAAATTGGTGAGAACTTATTTTGGCCAA
AATAAAAGAAATTGCCCATTCGACAAGATAAGTTTTAGGATTTTTGCTGC
TCCCTAAAATTAGTTCTCTCCAAAATAAAACTCCCTTAAATGTAATTATT
GATGGCGGTCATTTGTTTTTTGCAAACTTGAGTTAAAATGAAACATTCAA
CATGATAAGCGTAATCTGAAAAGAATCCAAAATTTTGAGTGAAGACCGGC
TGTGACATCAATTTTTGTAATGGAATGTTTGTGTCAATCTTTTCAAGTGA
AAACAAAAAGTTGTTGTGAGTTGAAAAGGGTTTCATAATATACAAAATAG
GCAAACTTTGGTAATCTATATACTAACTGTTTGTTTTGGAATACTGTAAA
TATTGACATCTTTCAAACATATTGCCCTCACAAGCTTGCGTTCATACTTT
ATGACATCTGTCAATATTTTACAGTTTTGCCCTTATTATTACAATTTTTT
TAGTTTATTTTTTAAGTCAGGACCAATAGTAATATCAGTTATTTGTAACT
GTCTGCATTATCCTGTAAAAATATTCAATAAAAAAAACAAAATCAAAACA
GTTAGTATAGGGTTAAGCAGGGTTAGGACATTAATTCTGTTTTTTTTTTT
GAAAGATGACCCGTAATGCAAAAAAGGATCTAAAATGGATGTAGTAAATG
AAGTTTATATTCTATTAACATACCCTTGCTTTTTATAATTATAGACCACC
CCTCAAAAGAAAAAAAAGAAACGAATTGCAAACACTCAGAAAGCTAAAAA
ACAAACACAGAAAGTAAGTAAAAGTACACTACAGTTGCTGCTCTCTAATT
TGATTTTCAAGAGGATTGAATTTTCATCCCTAATCTAATAAACACAAATT
AAATAAATGAATTATAGAGCAAGGGAAGAAGAATACTACAAAAAAAGATT
GGTAACATAAAATACAACAAATAATGTGTTATTTACAATAGTTTCTTAAA
AAAAATGACTGAGAGCTTGAATTTAATCAAATACTGGAGCTTATCAAATG
ATAGGATGTTGAATTAGAGTCTCAACTAAAAATTTAGATAATTTAATTTT
TAATTTAATTCAGGCATCAAAACCCTCAAAGAAGGTTGATCAAAATCAGG
ATGGTTTGTCTCGTTTGGTTAAAACAATACATCCAGAAAAAGTAAGCTTT
ACATTTCATCACTGGTGGCCTGGTAAGGGTGCACTGTTAGGTGGATCAAT
TTTTGGAATGGATTTAAGAGGCTCCTAACAGACCTAAAAATCTAAAATTA
GCGAGTTGGGGGCGTTTATTTGGCACCAAGAGTATTGTCCTTGGCCTTAT
GGGGTAGGTTTCAATTTTTAAAGATCAACCAGTGTTTATACAGATCTTAT
CACTCATTTTAGTTAATTTTGTTTATCAGGTAGTAGAAGAATGTACATTC
TCAGATATCCTGAAAACTATCAATCCAAGCATTGTAAGAATTTCTTTTGT
ACACAAGTATTACTCTTGGATACCTAATAGATGGGGATAGGAATAAGCAG
GGGGTTAAAAAATCTCAAAACTTAGTAAACAGAGAGGTTGGGATTAAAAT
TTGCAGGGTGGAAAATATGGAAAAGGCAGCTAATCTATATTATAATACCC
AAAAATCAAAACTATCCAATTCTTGCATCATGCTTTTTCGCTTTTTAAAG
CACACAGCATTTTTTCCCGAATTTTAGTATGTAGGGGCAATGAGCCATAA
TACATATCTTCAGTAAAATGTGGGTTATTGACACTTTCTACTACAGGCAA
GGTTAATTTCTTGGGAAACCGCTCGTGCAATTTGATTGCACTTTGGTCGT
GAAATTAATTCTAACTTGCCCTCCTTCCTACGATTATTAGAACCAATTAT
TTTCTTTTTTAGAATGATTTGTCCACTTCGACAGGGGTAACAAACCGTAA
TACATCCACTTTGACAGGGGCAACGAACCGTGATACATCCACTTTGACAG
GGGCAACGAACCATGCTACATCCCCTTCGACAGGGGGAACGAACCATGCT
ACATCCCCTTCGACAGGGGCAACGAACCGTGATACATCCACTCCGACAGG
GGCAATGAACCGTGATACATCCACTTCGACAGGGGCTATGAACTATAATA
CTTCCACTTTAACAGGGGCAATGAGTCGTAATGAAAAACATGTGAATATC
ATTATTTTTTTCCTACAATTGATAGAACATTTGAATATGTACTAGTAATA
ACATGGTTTAGAGGGTGATTTGGGATTAATAACCCCGAGGTTCATTGAAA
ATATTTAAAAATAGCTCGAACGTAGTGAAAACTATAAAAAACATTCGACT
GACACGCTTATTTTGATTGGCTTAAAAATTTTATACAATATTTTGTTAAC
CAATCAAAATATCGTACGATACTTTTCTTTCAACCAATAGAAATTTTTGT
TTACATCAGGGTGATTACAAAAAAGCGGGCTATTACGGATTTATCGCCCT
GCTCGTCCTTTACAAATCTAAGCTAAATGTAATCAACCATATAATTAGGG
TCAGTAAAATGCTTGAGTTATTGACACTTTATACTAGAAGCAAGGTTAAT
TTCTTGGGAAAGGGATTTGTAAAATTTAAGACATGAAAAGGGTGGTAAGA
AAATGTTTTTTTTCCAAAAATGAATAACCTGCTGTCGCTCGTGCAATTTG
ACTACACTTTGGTCGTGAAATTAATTCTAGCTTCTACCCTCCTTCCTATA
TACGATTATTAGAAGCAATTATTTTCTTTTTTAGAATGATTTGTCCACCT
CGATAGGGGCAACGAACCGTGATTCATCCACTTCAACAGGGGCAACGAAC
CATGATTCATCCACTTCGACAGGGGCAACGAACCATGATTCATCCACTTC
GACAGGGGCGATGAACCGTGATACATCCACTTCGACAGGGGCAATGAACT
ATAATACTTCCACTTTGACAGGGGCAATGCGTCGTAATGAAAAACAGGTG
AATTTTCATTATCTTTTTCCTACAATTGATAGAACATTTGAATATGGGTC
AGTAAAATGCTTGAGTTATCGACACTTTATACTGAAAGCACGGTTAATTT
CTTGGGAAAGGGATTTGTAAAATTTAAGACATGAGAAGGGTGGTAAGAAA
ATGTTGTTTTTTTTCAAAAAAATTAATAACCTGCTGTCGCTCGTGCAATT
TGATTACACTTTGGTCGTGAAATTAATTCTAACTTGCCCTCCTTCCTATA
CGATTATCAGTACCAATTATTTTCTTTTTTAGAATGATTTGTCCTTTATA
TGATTCACCTTTATAGCCCTAGCTTTTAAGGTACTACCTTAAAAGAAGAA
ATTTTGGCAGAAAGAAAATTTGAAGGATTTGGATTTACTCAAAATCTGCC
AAATTAGGCCAAAAAGCCAAAATTAATATTCTCCATCATCCGCTAAATTA
AATTCCCGCCAAATTTAAATTTTTTTATTGACATCCTAAATTTGTGCTAT
TTCAAGCCTCAAAACTGGTTTTTCGCTTACTTAATAACGCTTAATTCGCT
AAATTAAATTCTGCCAAATTTTATTTTCTCAGCCATCCGTCAAATTAAAT
TCCCTCCAAAATTTCTTCCTTTAAGGTATTATCAATCCAATTATTTTCAT
TTTTAGAGAGATACATCCACCTTGACAGGGGCAATGAGCCATGATACGTC
CACCTGGACAGGGGCAATGAGCCATAATGAAAAACAGGTGAAATTTTGTT
GTTTTTCTCCTACAATTGGTGTCTTGAAGGTAGAAATTTTGACGGAAAAT
TTGGTGGATTTGGCGGAGTTAGCACGCACTGTATACTTCAAGTAAGGTGA
ATTCCTTGAGAGAGGGTTCTGTAAGTTTTAAGACATAGAAAGAATATTTT
ATCACCATATCAGAATTGGTTTACATTGGCTTTTTCAGTGTAAGTTTTGA
TATTACTTTTGCAATCAAGTTTCAATTAAAGGGAACGACCGCTTATAAAT
ATAGGGCATTGAGGAAACTGCCAGTTTCTAGGTATACTCTGAAATAAGTG
CTAACGTCAGCAGGCAATCTAATTGGTTTATCTGAAATTCGAAAGTTGTT
TTGAAACATGTTTATTAAAAAGAAGACATTGCAATGCAACGGTAAACAAA
AAATCGTTAAAAGGGAAACCCCAAAAAAGCAAGGACAAAACTCGAATAAA
ACAAAACCGAGTATTTTCAGATAAAAAGAGTTATACTTATATTTTTCAAT
ATGATTCATCTCACAAGGGTTTATTTTAAAGCTGTGGTAATTCTTGTCTC
ATAAAATGATGAATCCGTTCACTTTCTAAAATGTATTTTTCTGATAAGCT
CGATTTTGTTTTTTGGGTTTTCCAAAGAGAAGAACTGACATTTGTAGTTA
TTCCCTTTAATCCAATAATTTTTTTAAGTTTTGATATTACTTTTGCAATC
AAGTTTCAATTAATCCAATAATTTTTTATGGTTTTCACTAGGATACTAGC
TTCACATTTTCAAGTGACGAAGACGAGAACGATGAAAATGTGCCGGTAAA
TTCTTGTTATTTTCTTTGTATGGTATAATTTGACACAGAGTTGAACACTT
AGCTGCACGAATTTTGTCATCTACTTGACAAAAACGCAATGTTTGGCAAT
AAAAAATGTTATTTCTCATAAACGGGCTTAAATTGGATAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040869XLOC_040869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065191-exon-scaffold_433-1575043694:17123..17153TCONS_00065191-exon-scaffold_433-1575043694:17123..17153Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:16093..16250TCONS_00065191-exon-scaffold_433-1575043694:16093..16250Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:15646..15830TCONS_00065191-exon-scaffold_433-1575043694:15646..15830Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:14791..14859TCONS_00065191-exon-scaffold_433-1575043694:14791..14859Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:14413..14490TCONS_00065191-exon-scaffold_433-1575043694:14413..14490Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:14121..14174TCONS_00065191-exon-scaffold_433-1575043694:14121..14174Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:13651..13691TCONS_00065191-exon-scaffold_433-1575043694:13651..13691Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:12607..12646TCONS_00065191-exon-scaffold_433-1575043694:12607..12646Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:11867..11947TCONS_00065191-exon-scaffold_433-1575043694:11867..11947Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1575043694:10912..11112TCONS_00065191-exon-scaffold_433-1575043694:10912..11112Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:17123..17153TCONS_00065191-exon-scaffold_433-1510915933:17123..17153Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:16093..16250TCONS_00065191-exon-scaffold_433-1510915933:16093..16250Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:15646..15830TCONS_00065191-exon-scaffold_433-1510915933:15646..15830Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:14791..14859TCONS_00065191-exon-scaffold_433-1510915933:14791..14859Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:14413..14490TCONS_00065191-exon-scaffold_433-1510915933:14413..14490Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:14121..14174TCONS_00065191-exon-scaffold_433-1510915933:14121..14174Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:13651..13691TCONS_00065191-exon-scaffold_433-1510915933:13651..13691Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:12607..12646TCONS_00065191-exon-scaffold_433-1510915933:12607..12646Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:11867..11947TCONS_00065191-exon-scaffold_433-1510915933:11867..11947Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1510915933:10912..11112TCONS_00065191-exon-scaffold_433-1510915933:10912..11112Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:17123..17153TCONS_00065191-exon-scaffold_433-1491911889:17123..17153Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:16093..16250TCONS_00065191-exon-scaffold_433-1491911889:16093..16250Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:15646..15830TCONS_00065191-exon-scaffold_433-1491911889:15646..15830Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:14791..14859TCONS_00065191-exon-scaffold_433-1491911889:14791..14859Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:14413..14490TCONS_00065191-exon-scaffold_433-1491911889:14413..14490Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:14121..14174TCONS_00065191-exon-scaffold_433-1491911889:14121..14174Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:13651..13691TCONS_00065191-exon-scaffold_433-1491911889:13651..13691Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:12607..12646TCONS_00065191-exon-scaffold_433-1491911889:12607..12646Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:11867..11947TCONS_00065191-exon-scaffold_433-1491911889:11867..11947Clytia hemisphaericaexon
TCONS_00065191-exon-scaffold_433-1491911889:10912..11112TCONS_00065191-exon-scaffold_433-1491911889:10912..11112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:10912..17153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.22721e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0584658	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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