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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065182 ID=TCONS_00065182|Name=TCONS_00065182|organism=Clytia hemisphaerica|type=transcript|length=3636bp
CCAAAACCAGAGGAGGACACTAAATGTGTTTCGAAAACGTATTCAAACAG
ATATGgtgctttgtttttatttgcaAACACTTATCATTCTTGgactgaaa
gaaaacaaccaaggaaaatgaatcTGACCAgagatttgaaaactttgagg
AATTTTAGATCACTGATCTTACAATTTGGTGTGGATGACACGGCATTTTT
AAAAGGCGTTACAGACATTATAAGAAAGGATTCATCGTCAAACCGTCCAC
AGAATGGATTAACTTTATCCTCAAATAAAACATGGGAACCAGACAAATGG
ACAAACCcaaatgaaatttccaaaagccTTCTCAATCGTTATTTTTATTC
AGTATTACCAGCGGTACATCATCAAATGGCTAATGGACTTAGTAATAATT
CCGATGAGACCGAATCTCGTAATAGTAATAAATATAGAAGACTGTCACTT
CATTTGAATAAAATATCCCTCAAGAAACACCGCTCAAAGGGAAACATATT
TCCACCCATACAACAAGATACCAACACAATACACGCTTATAACAACCATA
ATATAACTTACTCAGATACACAAACACAAGCTAGATCGCATTCAGATCAT
GCAAAGATTTCATATTCAACTTTTGACTTTTCGACAACAAGTAGTAGTAA
CACTaatcataacaacaaaatttataaaaacagaaTAGGACACGAAACCC
TTATAACAACCCAtgaacaagaaaaaacaaaaccgCAACAATCGTTTAAT
ATTGATACACGCGAAGAGAAAGTTAAATCGAAAACTTGTCCAAATACACC
TCGATCAAATCATAGAAGTCAAAATAATGCACCCACTTTAAATCATATCA
AtgtcaaatttttacaaaatcgcCATAAGCAAAAAAGTGCTAAATCAGTG
ACAACACCTTATTACCTAACAGATAATTCACATAAACAATACTTTGCCGA
AGATGAGTATATACAGACATCGGAACCAAGATTTGCATACCGTGCTAATG
CGTTATCCACGAATAAAAATCCAGTCAGTAAACCACAAACACCTGAACTA
ATCACCAAAGATAAAGTTATCACACGGAATCGAAACTTAAGTGTATGTGG
CAACAGTCTACCTTCAATATTCAATTCATCTAATTCATACGTTAGTAAGC
AAGATCTTGATATCTTAGAACTTGAATCTCCAATTATGTCACCTTCTCCT
CGATCCAAATACCAATCTATAGATTCTGGTTGGGAGTCGATGGATCAGTC
TATGGAACTCGAACAAAATAATGGAGTTATATCAGATATTCCTAAAGAGA
TTACTGATCCTTCAAATGATTGCAATGAAACTTCTTCCCACAACAATGAA
GTTCAACTTGATAAAGATGCACATTTACCTGATATCAAATCAAACAATAA
TTTCGGTGATGAAAACAAGAACTATACTTCAAAAAGCCAAAACATAGATG
AAAAGTCTTCTCGTCTCCCACCTATCACAAAAGCGAGAAACGTTTACCAA
GATTCTATCCACAGGTTTTCACCACCATCGGATATAAATGATAATGACAT
TCTGAATGCTGAAGATCTCTCCGGTGAATGTAGTAAAGTAACCGAACATC
CAGATTCTCAATCAAATAGGGCTGAAGATTTACGAAATACTGTAGACCAA
ACAAACGAATTTTTACCAACGATTAAAGGGAAACCAAACAATGATCAGTC
ACGCACAAAGTCTTTGGAGAACGCTGACATCTTTGATCTCACCGATGAAG
ATGTACCAAACATTACTAACCATAAAGAAGATAATGCGCAAAGAAATGAT
ACATTCATCTTACCAACATTGTCAACTGATGTTAAAGTGCAATCTAAAGT
TCTAAAagGTACCACAACATCATCTGAAATCAAAGTCGGAAACAAACAAA
GCCTATCTAATCAGCCAGCAGATAAAAACAGTCCTCCGATGAATAAATTA
ACAGGTCAAGGAAATGACAACAATGTGGTAAAAACCGGTATCACCACAAA
TGAGATGGATAAAGGGATTGATATTGCCTCAGCCGAAACCAAAGACCCTA
AACCAAAGAAACACAAAACAAAGACACACAAAACAAAGACAAACAACACC
AAAGAGaaaacaaagtccaaaacaaaaatgaaaaacaaagctGCATCGAT
CAAAAAGGCAAAACATAGTAGCAAACAATCCTCACAAAATTTCGATATTA
ACTACTTGCTTAACGAGACTCAGACGAAGCCGGATGTTCAAATTTTTAAT
AAGAAGAAgaccaacaaaaacaaatctgCCAATAAAAAGAAACAGCCTTT
GNTCACAAAATTTCGATATTAACTACTTGCTTAACGAGACTCAGACGAAG
CCGGATGTTCAAATTTTTAATAAGAAGAAgaccaacaaaaacaaatctgC
CAATAAAAAGAAACAGTCGTTGACCAAATTTGCTGTGCAACCAATAGATA
CAACAGGCCCTTTTAGAAATGCACAACTCGAGGAAAACTCTTTGCTCAGT
GATGGTTCTACACCCAAAAAGCCTAATGCAGAGCACACTTTTTCTCAGAA
TAACGCACGACTTGATTTGAGGACgatcaatgactcagataaagagAATA
TTCCATTAGTCTCTGGAAGTGAGAATGTGTCCAACGATATTAAAGCAGAG
AAAACCGATCCGCCGCTAGATTTATCCAACGATGATCAAGATATAACGGA
TGGTATTCAGAGATCGAACACAAATCGAAATTCAGCGCTAGAGAGACGTA
AAAATGCTGCTTTGGAACGCCGTGCTAAAATGGAAGCTAAAAGACTAGAG
CAAGAAaggttaaaacaaaaacaaatgatgTTAGCCATCGAAGAAGAGAA
AAGGCGGGAATTACTTGAAGAGGAGCTTAGACGTGAGGGTGAAGAAAGGG
CGGCCGCTAAACGGAGGGCGCTTGAGGAGCAAGAGTTTTTGAGGCAGGCA
GAGTTGTTGGATCGCGAATGTGCGGAAATGGAACGCCGAATGGCGGATGA
GAAAGAAAAGGCGGAAAGAGAACGTTTATTACATCGCATGTCTTTATTAT
TAGCGGAACGCGAAGCGGAGCAACAGTTAAAGCTTGCAAAGGAGAAACTA
GAACGCGAAATCGATGAAGCTCTACGAAGGAAAGAAGAAGAGATTTTAGC
AGAAATGGAGGAGAGCGAACGATTAAGATATTTAGCTGAACAAGAAGCGC
TAGAACGAGAAAGACTCCGCGAAGAAGAGCAGAGACGAAAAGAACTTGAA
CTACAAAGAATTGCGGAGGAGAATGAAAGACAATTAAAGATTAAAGAGCT
TGAACGACTTCATCATAAAATGCTGAGTCAGAAATATATCAATTCTAGTT
TCCAGCGTGGTAATGATTTACTTGTTCTATCACAACGAGTCACACGTGCG
TTTgcttattcttattttcacaaacTTCCTTTTTTCGTACCTCCTTCAAA
TGGAACTGAGACACCGAGACAAAGTTCGGGTTATCGAGTACAGACTTTGC
CTTCTTTAACCGAACTTATGGACGAAATTGAAAATCTTGACAATGACGGT
Tagtttattttctaaatttatttatttttgtatttattggattttatctt
tttgaattttcgttttgatattttataccGTGATGC Run BLAST on NCBI transcript from alignment at scaffold_433:370649..375990+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065182 ID=TCONS_00065182|Name=TCONS_00065182|organism=Clytia hemisphaerica|type=transcript|length=5342bp|location=Sequence derived from alignment at scaffold_433:370649..375990+ (Clytia hemisphaerica)
CCAAAACCAGAGGAGGACACTAAATGTGTTTCGAAAACGTATTCAAACAG
ATATGgtgctttgtttttatttgcaAACACTTATCATTCTTGgactgaaa
gaaaacaaccaaggaaaatgaatcTGACCAgagatttgaaaactttgagg
AATTTTAGATCACTGATCTTACAATTTGGTGTGGTGAGTTTTTATTAACA
AAATATTGTGGCATTATTCAAGTAATTATTCTAGCCATCGGAGAgaacat
gaaattctgagcaaaaagtATACTACAACAAGTCTTATACTCGAACACAC
AAAAAGATATGGTCATCTTAACGTTCGAGATCCTGTGAAATCTGTTacgt
tttagaaaaaaatcgaCGTCAATCGTACTCTAACTGACAGAATTTTGAAC
TTCAAAAGCTTGTATTTCTTTACATGTTTTCTTTAGACGACTTGTTGTAG
TATAAAAGATTATGGCATTATTCTAGCTGTTTAACTCCATAGATTTATat
agcccgaaaggctagatgccgtgctttaatttttatttgCGATGAtagct
tttttaggcttatgcaaataaatggatagaaatagaaatttaagccatcg
caggcaacgtgagtgacctaggtaggatttcctacctaaccttcgggctt
tataaatctatttttAACTCCAGTTCAAGACATTACTTCCCCTCTCCGAG
CAATGccgtttaaaaaaagaaagatggcTTCAGTGGGTTAAATTTAGCCG
GAATAACATTGTTTGGGTGGAGGAGGGGGATGCTCATTTTCCTGGCTTTG
TGCCATAAGTTTTTTGTCAATGAttatagtttttaaaatttGCTAAGATT
TTTTGGGAACGTTTTGTTAAAATTCTATACCCTAACTTGTGACCGACAAC
TGGAGgggtttcaattttatttaaatagAGAAGGAAATATACTTATTTCT
AATCTGATAGAGATGCTAGAAaacgattttgattttgattaccATAATAA
GCTTAAAACAGTTCTGAATTAGATTGAAATAAGTACCCTTTATAAGAATC
CTTGTAATTCTGATGAATTTACGTAACTAGTAACCTTTCATAAGTTTGCT
TATTGAtaaattttgttcttattattAAAATATTGATACAAAATTATTTA
ATCCAATTTCCTTTACTTTTTTGTAGGATGACACGGCATTTTTAAAAGGC
GTTACAGACATTATAAGAAAGGATTCATCGTCAAACCGTCCACAGAATGG
ATTAACTTTATCCTCAAATAAAACATGGGAACCAGACAAATGGACAAACC
caaatgaaatttccaaaagccTTCTCAATCGTTATTTTTATTCAGTATTA
CCAGCGGTACATCATCAAATGGCTAATGGACTTAGTAATAATTCCGATGA
GACCGAATCTCGTAATAGTAATAAATATAGAAGACTGTCACTTCATTTGA
ATAAAATATCCCTCAAGAAACACCGCTCAAAGGGAAACATATTTCCACCC
ATACAACAAGATACCAACACAATACACGCTTATAACAACCATAATATAAC
TTACTCAGATACACAAACACAAGCTAGATCGCATTCAGATCATGCAAAGA
TTTCATATTCAACTTTTGACTTTTCGACAACAAGTAGTAGTAACACTaat
cataacaacaaaatttataaaaacagaaTAGGACACGAAACCCTTATAAC
AACCCAtgaacaagaaaaaacaaaaccgCAACAATCGTTTAATATTGATA
CACGCGAAGAGAAAGTTAAATCGAAAACTTGTCCAAATACACCTCGATCA
AATCATAGAAGTCAAAATAATGCACCCACTTTAAATCATATCAAtgtcaa
atttttacaaaatcgcCATAAGCAAAAAAGTGCTAAATCAGTGACAACAC
CTTATTACCTAACAGATAATTCACATAAACAATACTTTGCCGAAGATGAG
TATATACAGACATCGGAACCAAGATTTGCATACCGTGCTAATGCGTTATC
CACGAATAAAAATCCAGTCAGTAAACCACAAACACCTGAACTAATCACCA
AAGATAAAGTTATCACACGGAATCGAAACTTAAGTGTATGTGGCAACAGT
CTACCTTCAATATTCAATTCATCTAATTCATACGTTAGTAAGCAAGATCT
TGATATCTTAGAACTTGAATCTCCAATTATGTCACCTTCTCCTCGATCCA
AATACCAATCTATAGATTCTGGTTGGGAGTCGATGGATCAGTCTATGGAA
CTCGAACAAAATAATGGAGTTATATCAGATATTCCTAAAGAGATTACTGA
TCCTTCAAATGATTGCAATGAAACTTCTTCCCACAACAATGAAGTTCAAC
TTGATAAAGATGCACATTTACCTGATATCAAATCAAACAATAATTTCGGT
GATGAAAACAAGAACTATACTTCAAAAAGCCAAAACATAGATGAAAAGTC
TTCTCGTCTCCCACCTATCACAAAAGCGAGAAACGTTTACCAAGATTCTA
TCCACAGGTTTTCACCACCATCGGATATAAATGATAATGACATTCTGAAT
GCTGAAGATCTCTCCGGTGAATGTAGTAAAGTAACCGAACATCCAGATTC
TCAATCAAATAGGGCTGAAGATTTACGAAATACTGTAGACCAAACAAACG
AATTTTTACCAACGATTAAAGGGAAACCAAACAATGATCAGTCACGCACA
AAGTCTTTGGAGAACGCTGACATCTTTGATCTCACCGATGAAGATGTACC
AAACATTACTAACCATAAAGAAGATAATGCGCAAAGAAATGATACATTCA
TCTTACCAACATTGTCAACTGATGTTAAAGTGCAATCTAAAGTTCTAAAa
ggtttgaaatatttctttgttgttttgtcAGTTGTCAGAAAAGTTAGATA
TTCAATGGCTTTAGAAAATGAAACGTTTTGGTACTCTCAGATGCATAATG
AACAAGGGATTGAATAAACGAGACGGGGCTTCAAATTTCAATAGCAGGAT
AACTTATTGTTTCCGGAGGGTTGTAATTTGTACCTTTAAATACCCTCAAA
ATGGTGAATATGGATAaaaccaggctatttagagAAATAAGGGACTCTTC
TTTTGACAGCCAGAAACTATTTTCACAATTTGATAAACGACGGTGATCCA
AATAAGTGCTGGGAGTTTGgaataaaatcaaaagattaACAAGAGGGACG
TCTATTAGGTAGCTGAGAGTACTTGCGCTACGACGTTTATGTCTTAATCC
TCGGTTTTTGGCTCATATTAATAAGTGGTTAATCATTTAAAATTCATTCG
TTGCAGGTACCACAACATCATCTGAAATCAAAGTCGGAAACAAACAAAGC
CTATCTAATCAGCCAGCAGATAAAAACAGTCCTCCGATGAATAAAGACGA
ATTAACAGGTCAAGGAAATANATCATTTAAAATTCATTCGTTGCAGGTAC
CACAACATCATCTGAAATCAAAGTCGGAAACAAACAAAGCCTATCTAATC
AGCCAGCAGATAAAAACAGTCCTCCGATGAATAAATTAACAGGTCAAGGA
AATGACAACAATGTGGTAAAAACCGGTATCACCACAAATGAGATGGATAA
AGGGATTGATATTGCCTCAGGTAAACAAACCAtatgttttcttcattttg
tatAGTTAAAGAAATATATTTCTCTAGTGCAAGTTTTCGTAAATTCAAAC
GAAATTTTAATACCACATTTCTTAAAATTCCTTTCTAGCCGAAACCAAAG
ACCCTAAACCAAAGAAACACAAAACAAAGACACACAAAACAAAGACAAAC
AACACCAAAGAGaaaacaaagtccaaaacaaaaatgaaaaacaaagctGC
ATCGATCAAAAAGGCAAAACATAGTAGCAAACAATCCTCACAAAATTTCG
ATATTAACTACTTGCTTAACGAGACTCAGACGAAGCCGGATGTTCAAATT
TTTAATAAGAAGAAgaccaacaaaaacaaatctgCCAATAAAAAGAAACA
GCCTTTGNTCACAAAATTTCGATATTAACTACTTGCTTAACGAGACTCAG
ACGAAGCCGGATGTTCAAATTTTTAATAAGAAGAAgaccaacaaaaacaa
atctgCCAATAAAAAGAAACAGTCGTTGACCAAATTTGCTGTGCAACCAA
TAGATACAACAGGCCCTTTTAGAAATGCACAACTCGAGGAAAACTCTTTG
CTCAGTGATGGTTCTACACCCAAAAAGCCTAATGCAGAGCACACTTTTTC
TCAGAATAACGCACGACTTGATTTGAGGACgatcaatgactcagataaag
agAATATTCCATTAGTCTCTGGAAGTGAGAATGTGTCCAACGATATTAAA
GCAGAGAAAACCGATCCGCCGCTAGATTTATCCAACGATGATCAAGATAT
AACGGATGGTATTCAGAGATCGAACACAAATCGAAATTCAGCGCTAGAGA
GACGTAAAAATGCTGCTTTGGAACGCCGTGCTAAAATGGAAGCTAAAAGA
CTAGAGCAAGAAaggttaaaacaaaaacaaatgatgTTAGCCATCGAAGA
AGAGAAAAGGCGGGAATTACTTGAAGAGGAGCTTAGACGTGAGGGTGAAG
AAAGGGCGGCCGCTAAACGGAGGGCGCTTGAGGAGCAAGAGTTTTTGAGG
CAGGCAGAGTTGTTGGATCGCGAATGTGCGGAAATGGAACGCCGAATGGC
GGATGAGAAAGAAAAGGCGGAAAGAGAACGTTTATTACATCGCATGTCTT
TATTATTAGCGGAACGCGAAGCGGAGCAACAGTTAAAGCTTGCAAAGGAG
AAACTAGAACGCGAAATCGATGAAGCTCTACGAAGGAAAGAAGAAGAGAT
TTTAGCAGAAATGGAGGAGAGCGAACGATTAAGATATTTAGCTGAACAAG
AAGCGCTAGAACGAGAAAGACTCCGCGAAGAAGAGCAGAGACGAAAAGAA
CTTGAACTACAAAGAATTGCGGAGGAGAATGAAAGACAATTAAAGATTAA
AGAGCTTGAACGACTTCATCATAAAATGCTGAGTCAGAAATATATCAATT
CTAGTTTCCAGCGTGGTAATGATTTACTTGTTCTATCACAACGAGTCACA
CGTGCGTTTgcttattcttattttcacaaacTTCCTTTTTTCGTACCTCC
TTCAAATGGAACTGAGACACCGAGACAAAGTTCGGGTTATCGAGTACAGA
CTTTGCCTTCTTTAACCGAACTTATGGACGAAATTGAAAATCTTGACAAT
GACGGTTagtttattttctaaatttatttatttttgtatttattggattt
tatctttttgaattttcgttttgatattttataccGTGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065182-exon-scaffold_433-1491911889:370649..370831 | TCONS_00065182-exon-scaffold_433-1491911889:370649..370831 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1510915933:370649..370831 | TCONS_00065182-exon-scaffold_433-1510915933:370649..370831 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1575043694:370649..370831 | TCONS_00065182-exon-scaffold_433-1575043694:370649..370831 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1491911889:371825..373499 | TCONS_00065182-exon-scaffold_433-1491911889:371825..373499 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1510915933:371825..373499 | TCONS_00065182-exon-scaffold_433-1510915933:371825..373499 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1575043694:371825..373499 | TCONS_00065182-exon-scaffold_433-1575043694:371825..373499 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1491911889:374095..374268 | TCONS_00065182-exon-scaffold_433-1491911889:374095..374268 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1510915933:374095..374268 | TCONS_00065182-exon-scaffold_433-1510915933:374095..374268 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1575043694:374095..374268 | TCONS_00065182-exon-scaffold_433-1575043694:374095..374268 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1491911889:374387..375990 | TCONS_00065182-exon-scaffold_433-1491911889:374387..375990 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1510915933:374387..375990 | TCONS_00065182-exon-scaffold_433-1510915933:374387..375990 | Clytia hemisphaerica | exon |
| TCONS_00065182-exon-scaffold_433-1575043694:374387..375990 | TCONS_00065182-exon-scaffold_433-1575043694:374387..375990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:370649..375990 + |
Blast
The following BLAST results are available for this feature:
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