TCONS_00065169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065169
Unique NameTCONS_00065169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065169 ID=TCONS_00065169|Name=TCONS_00065169|organism=Clytia hemisphaerica|type=transcript|length=696bp
CAGACATCCTATAAATACTGCAAGTCAACAGGGCAGAATCATCAAGTTTT
CGAGGAACAGAAGAAAACCTACTCAATATACATTTAAAGCTCAACATtaa
agATACTTCACGTTCATCGCACACTAATCTAGCCATGAAGTTATCACTTA
TTTTGTTCTTTCTCGTCGTTGCTGCAACATCCATTGAATGTTATGGAGTC
ACACGCTTGTTCCGAATCAGAACTTTAAAACGTGTCTTCACCTCAACATA
TTTAATTAACAAAGATCCATTAGATNAAAGATCCATTAGACATGCACGCG
GCGGCCGCTGAATGCGCAAAGTGTGGAGGTTTCTTGGCTACCATCAATAA
TGTTAGGGAGCACCATTATTTGGTTGGCCAATTGAATCTACTTGGAATCA
AATCAGCTTGGATCGGATTGATTGATAAATCTACTGAAGGCAAATTTGTA
TGGCCCAGCACACCGGCCCCAGGATTCAAAAGATGGTGTCCCCACGAACC
AAATAATTTTGGTACAGGCGAAGATTGCGTAGAGTTGAAAGCAGAAACAG
AAAGATGTTTAAACGATCTTTTCTGTAATGTTAAAAAACCTTACATTTGT
GAAATCAACGAAGTCAAGACAATTTCTAATCGATTAATGTAattttgttt
tgtaaaaatcattttgaagtaGTATTTTTACAGGTGTGTTTTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00065169-protein

>TCONS_00065169-protein ID=TCONS_00065169-protein|Name=TCONS_00065169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MHAAAAECAKCGGFLATINNVREHHYLVGQLNLLGIKSAWIGLIDKSTEG
KFVWPSTPAPGFKRWCPHEPNNFGTGEDCVELKAETERCLNDLFCNVKKP
YICEINEVKTISNRLM
Run BLAST on NCBI

transcript from alignment at scaffold_433:177628..179894+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065169 ID=TCONS_00065169|Name=TCONS_00065169|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at scaffold_433:177628..179894+ (Clytia hemisphaerica)
CAGACATCCTATAAATACTGCAAGTCAACAGGGCAGAATCATCAAGTTTT
CGAGGAACAGAAGAAAACCTACTCAATATACATTTAAAGCTCAACATtaa
aggtaacttttattttcaatatcgaTATATAgaaatgataagattttgaa
aTATATCTGAaaaatccgaaatttttaatttttccttctCAATTCTTCTT
TCATGCTGCTCAGTGGTAATACTTTGGGCAATGAAGTAGTATTCAATACT
TGTAATTATTTGCTTAGAGTTTTGCCTAACTTAGTGTTTCCATCACTttt
cttctaaaatttttactttttctttaatAGATACTTCACGTTCATCGCAC
ACTAATCTAGCCATGAAGTTATCACTTATTTTGTTCTTTCTCGTCGTTGC
TGCAACATCCATTGAATGTTATGGAGTCACACGTAAGGATTTAAATACCT
AGTGGGGTATCTGAGAGGATTTCATCATTTATgacaagaaatatttcttt
taatcAACCATGCTCATTAAAAAGAAACGAAGACTCTACGTCAAAAACTT
TGAGCTATCGCCTCAGATTCGCCGCTGCCTAACGCTTAGAATCAAAACTC
TTCCGAAAATTTTCCTTTcgatatttgactttttaaattttctacaTCTG
AAATAAATCCAAGTTAACTCCATATCCTGGGTAATAGAGTTTTGCCCGCA
ATGGAGGGAGACGCTTAAACAACTAATTGAAGTGACAAGTCGGCCCAATT
AGTTTAATTTTCGAATAGAGATCTTGGTTATATCACACCCATCagtaaaa
agtgataaaaacgGCTCTGAACCCTGTTACTAAATATATCAtcttttcaa
ttaattttcagGCTTGTTCCGAATCAGAACTTTAAAACGTGTCTTCACCT
CAACATATTTAATTAACAAAGATCCATTAGATNAAAGATCCATTAGACAT
GCACGCGGCGGCCGCTGAATGCGCAAAGTGTGGAGGTTTCTTGGCTACCA
TCAATAATGTTAGGGAGCACCATTATTTGGTTGGCCAATTGAAGTAAGTA
TTTTACTCACTAACGCAGCTACTAGTTTGAGTGTACAAAACGTGATAAAT
TAATTTCATACTCATTGGGTCTTTTATGCTCCGGGGGGGGGTGGTTTTTG
GGCAAGTTGGGTATGTGCCggcttaagggtgccttttttggaaccctgca
gtccctgtaagggttgTAAAAATCAGAGAATCAAACTTCAGTCATACTGA
GAGTcggaaaaaataggaaaatttcaactatTTGGCCCCAGAAAGTTCGA
ATTTTGATCAagttagtcccaataagggtagtaaaactcacaaaattttc
ctttttttccaaatttttagtcCCGTTNccggggggggggggtggtttTT
GGGCAAGTTGGGTATGTGCCggcttaagggtgccttttttggaacctggc
agtccctgtaagggttgtaaaaatcagaaaatcaaacttcagtcttactg
agggtcggaaaaataggagaATTTCAACTATTTGGCCCCAGATAGTTCGA
ATTTGATCAagttagtcccaataagggtagtaaaactcacaaaattttcc
tttttttccaaatttttagtcccgctaagggtccgagggtcgaaagttgG
GCGGCACACGCCCCTCAGCtcacaaccctagtacccccgggcttTTATGC
GATACAGGATGGATATCTTCACTACTGGAATCCTTAAAAATTACTTAAcc
cgttttctttactcaaactagtatGAATCTCTGTCCGTATAGATTTCTTT
GTTTGAACGAAAAGGTCAACCTGGATGCCAAGCTAGGTTCTCACAGCCGA
ATAGTGTCAATATCGGAGGTCATCCATTTTATATGCAATCTATCCAGAAC
TTAAAATCTCTAACTGCTGTTATATGTCACTAATAATCCATACTTTTTCA
ATTACAGTCTACTTGGAATCAAATCAGCTTGGATCGGATTGATTGATAAA
TCTACTGAAGGCAAATTTGTATGGCCCAGCACACCGGCCCCAGGATTCAA
AAGATGGTGTCCCCACGAACCAAATAATTTTGGTACAGGCGAAGATTGCG
TAGAGTTGAAAGCAGAAACAGAAAGATGTTTAAACGATCTTTTCTGTAAT
GTTAAAAAACCTTACATTTGTGAAATCAACGAAGTCAAGACAATTTCTAA
TCGATTAATGTAattttgttttgtaaaaatcattttgaagtaGTATTTTT
ACAGGTGTGTTTTTAAG

Coding sequence (CDS) from alignment at scaffold_433:177628..179894+

>TCONS_00065169 ID=TCONS_00065169|Name=TCONS_00065169|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_433:177628..179894+ (Clytia hemisphaerica)
ATGCACGCGGCGGCCGCTGAATGCGCAAAGTGTGGAGGTTTCTTGGCTAC
CATCAATAATGTTAGGGAGCACCATTATTTGGTTGGCCAATTGAATCTAC
TTGGAATCAAATCAGCTTGGATCGGATTGATTGATAAATCTACTGAAGGC
AAATTTGTATGGCCCAGCACACCGGCCCCAGGATTCAAAAGATGGTGTCC
CCACGAACCAAATAATTTTGGTACAGGCGAAGATTGCGTAGAGTTGAAAG
CAGAAACAGAAAGATGTTTAAACGATCTTTTCTGTAATGTTAAAAAACCT
TACATTTGTGAAATCAACGAAGTCAAGACAATTTCTAATCGATTAATGTA
aATGCACGCGGCGGCCGCTGAATGCGCAAAGTGTGGAGGTTTCTTGGCTA
CCATCAATAATGTTAGGGAGCACCATTATTTGGTTGGCCAATTGAATCTA
CTTGGAATCAAATCAGCTTGGATCGGATTGATTGATAAATCTACTGAAGG
CAAATTTGTATGGCCCAGCACACCGGCCCCAGGATTCAAAAGATGGTGTC
CCCACGAACCAAATAATTTTGGTACAGGCGAAGATTGCGTAGAGTTGAAA
GCAGAAACAGAAAGATGTTTAAACGATCTTTTCTGTAATGTTAAAAAACC
TTACATTTGTGAAATCAACGAAGTCAAGACAATTTCTAATCGATTAATGT
Aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040860XLOC_040860Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065169-proteinTCONS_00065169-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065169-exon-scaffold_433-1491911889:177628..177729TCONS_00065169-exon-scaffold_433-1491911889:177628..177729Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1510915933:177628..177729TCONS_00065169-exon-scaffold_433-1510915933:177628..177729Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1575043694:177628..177729TCONS_00065169-exon-scaffold_433-1575043694:177628..177729Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1491911889:177958..178059TCONS_00065169-exon-scaffold_433-1491911889:177958..178059Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1510915933:177958..178059TCONS_00065169-exon-scaffold_433-1510915933:177958..178059Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1575043694:177958..178059TCONS_00065169-exon-scaffold_433-1575043694:177958..178059Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1491911889:178489..178670TCONS_00065169-exon-scaffold_433-1491911889:178489..178670Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1510915933:178489..178670TCONS_00065169-exon-scaffold_433-1510915933:178489..178670Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1575043694:178489..178670TCONS_00065169-exon-scaffold_433-1575043694:178489..178670Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1491911889:179585..179894TCONS_00065169-exon-scaffold_433-1491911889:179585..179894Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1510915933:179585..179894TCONS_00065169-exon-scaffold_433-1510915933:179585..179894Clytia hemisphaericaexon
TCONS_00065169-exon-scaffold_433-1575043694:179585..179894TCONS_00065169-exon-scaffold_433-1575043694:179585..179894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:177628..179894 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.93106	2.74473	1.74558	1.75366	0.245556	0.15208	0.221419	0.19407	0.2907	0.654105	7.86214	0.399532	0.109376	0.348859	0.0774407	0	0.224259	0.309202	0.167056	0.161555	0.0782154	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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