TCONS_00065137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065137
Unique NameTCONS_00065137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065137 ID=TCONS_00065137|Name=TCONS_00065137|organism=Clytia hemisphaerica|type=transcript|length=512bp
CAAAATGTCTCGTGGATTTCAGCGAATGGCAACATTTAGTGGGAAAGAGG
ATTTGCTGACTATTAAgcagcctctataagaaactttttcgttaAACGAT
GAACAGAAGCCTAGAGACTTCCAAAGACTTAAAGGGGagtcttttatttt
caatttcctaAAGGGGGTTACCACTTAACAGGGGGGGTTCCCATAAATAT
CTGTTCTCATGATAATACTTGAAAATAGTATTTCTCAACCAGTACTATTG
AATTATTTCCCCTTGATAATGATATTGTCTAACCTTTTAAACAATAAGCT
TGTCATTCAAGGCTTCAGGGgactgaacaaaaaaaattaaggaaGTTTTT
ATGGGTGTTTTTGAGGAGATGTAAATCTGAACCTTTTCAGTCTTGAACCC
AAAAATTCAAACCTTCAGACAGACAGGAAATCTAGTACTATTATTCTGGA
AAGATGATTCAAgttcttgttgtttttgttttgatttttttgtttactca
tgAGGTCTTGGA
Run BLAST on NCBI

transcript from alignment at scaffold_431:32347..32858

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065137 ID=TCONS_00065137|Name=TCONS_00065137|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_431:32347..32858 (Clytia hemisphaerica)
TCCAAGACCTcatgagtaaacaaaaaaatcaaaacaaaaacaacaagaac
TTGAATCATCTTTCCAGAATAATAGTACTAGATTTCCTGTCTGTCTGAAG
GTTTGAATTTTTGGGTTCAAGACTGAAAAGGTTCAGATTTACATCTCCTC
AAAAACACCCATAAAAACttccttaattttttttgttcagtcCCCTGAAG
CCTTGAATGACAAGCTTATTGTTTAAAAGGTTAGACAATATCATTATCAA
GGGGAAATAATTCAATAGTACTGGTTGAGAAATACTATTTTCAAGTATTA
TCATGAGAACAGATATTTATGGGAACCCCCCCTGTTAAGTGGTAACCCCC
TTtaggaaattgaaaataaaagactCCCCTTTAAGTCTTTGGAAGTCTCT
AGGCTTCTGTTCATCGTTtaacgaaaaagtttcttatagaggctgcTTAA
TAGTCAGCAAATCCTCTTTCCCACTAAATGTTGCCATTCGCTGAAATCCA
CGAGACATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040842XLOC_040842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065137-exon-scaffold_431-1491911889:32347..32858TCONS_00065137-exon-scaffold_431-1491911889:32347..32858Clytia hemisphaericaexon
TCONS_00065137-exon-scaffold_431-1510915933:32347..32858TCONS_00065137-exon-scaffold_431-1510915933:32347..32858Clytia hemisphaericaexon
TCONS_00065137-exon-scaffold_431-1575043694:32347..32858TCONS_00065137-exon-scaffold_431-1575043694:32347..32858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:32347..32858 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42329	0.91993	0.650695	1.27621	2.22373	0.737485	1.22771	1.61202	0.572518	1.41578	0	0.409001	1.11106	0.776902	1.16341	1.33804	1.24706	1.4986	0.799013	1.54761	1.2987	1.78274	2.16699	1.41781	0	0.654949	2.23563	1.5769	1.38835	2.80965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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