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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065129 ID=TCONS_00065129|Name=TCONS_00065129|organism=Clytia hemisphaerica|type=transcript|length=589bp
AAGCgaagattttcggaaaatttgggtaaatttgATATATAAAACCCAAA
GAATAGATATCAGTTTTTCTATCTATATCTATGCCACAGaatgtaaaagt
aaaaaaaaacacttatctttttcttgttccttcTTCTTTACAGTACACAG
TCAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAA
CAACACACTTTCAATTACTTTTTGCCGTCCTTGCCAACTTGTTTGTACAG
GAGTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCTTCACCA
ATCACTTGCGCTACTGGAGCGACATTTCCCGACGACATTCATGAACATCA
CCACGCACATCTGCCACCATTTTGTATCTAACATGAGAAAGTTTGGGACA
TTATACGCATCATGGATGTATTCCCAAGAACGCATGAATTCTTGGATCAC
AAGAAGGTGTAACAGCAAAGCCCGCATGGAGAGTACCGTTATGGATACCT
ACCAGCTCATGGACTGGGTAGTTTACTGTACACTGACCAACAAGTTTCCA
GAGGCAAACGATCCACAAAATGCGATATCAAAAAAGGTA Run BLAST on NCBI protein sequence of TCONS_00065129-protein >TCONS_00065129-protein ID=TCONS_00065129-protein|Name=TCONS_00065129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
SEDFRKIWVNLIYKTQRIDISFSIYIYATECKSKKKHLSFSCSFFFTVHS
QQYLGLCYSWTSSCATTTHFQLLFAVLANLFVQEFEREQGLDALEQHLHQ
SLALLERHFPTTFMNITTHICHHFVSNMRKFGTLYASWMYSQERMNSWIT
RRCNSKARMESTVMDTYQLMDWVVYCTLTNKFPEANDPQNAISKKV Run BLAST on NCBI transcript from alignment at scaffold_431:74816..76070+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065129 ID=TCONS_00065129|Name=TCONS_00065129|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_431:74816..76070+ (Clytia hemisphaerica)
AAGCgaagattttcggaaaatttgggtaaatttgATATATAAAACCCAAA
GAATAGATATCAGTTTTTCTATCTATATCTATGCCACAGaatgtaaaagt
aaaaaaaaacacttatctttttcttgttccttcTTCTTTACAGTACACAG
TCAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAA
CAACACACTTTCAATTACTTTTTGCCGTCCTTGCCAACTTGTTTGTACAG
GAGTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCTTCACCA
ATCACTTGCGCTACTGGAGCGACATTTCCCGACGACATTCATGAACATCA
CCACGCACATCTGCCACCATTTTGTATCTAACATGAGAAAGTTTGGGACA
TTATACGCATCATGGATGTATTCCCAAGAACGCATGAATTCTTGGATCAC
AAGAAGGTGTAACAGCAAAGCCCGCATGGAGAGTACCGTTATGGATACCT
ACCAGgtatatatttcaaaatagtTTACAATGTAAAGAATTAACTCGAAT
CTTTGATCGAAAAAGCTCTAACGGGTTAGAGTAAGCTAGCTACAATTCCA
TAAGTGAGGATTCTCAACTTCCACAcctggaaaattttgaaatgtagTAT
TCGAAGGGCAAGAGGACAGAGGTTAATAAATGCTTTCTTTTTAtcagaac
aatttcataagaacacaaggctgaaatttggccaaaatttaagaacaatc
tgagcctcagatttcaaaGAGTTTAACATATTTTAAACATTGTTATGAGT
TGAGTTCTTACAGGTTTAACTTTTACATaattgttcccgtttcatatcag
acactgtctgcctattgttatattatgctgatataagcaaaaaatgtttt
tcttttcctctttatgataatcttgctccacatccgtgtcaattcactgt
gaaaaagcttgtaaattaaaattgatgagtaagcaaacgatatcactctt
aaaACCTTTAAGTAGAGAGACTAAGCGAATTAAGTAGTTAGAACGATCAA
ggctgaaaaattcaaaaattaagaacagcccagcctgagccaaaatttaa
tGGTTCTTCAAAAAGGCGTGTGGATCTTTTAGCTCTATGTATTTCTGTAA
TGTTCATATGTTAAATTTCAGCTCATGGACTGGGTAGTTTACTGTACACT
GACCAACAAGTTTCCAGAGGCAAACGATCCACAAAATGCGATATCAAAAA
AGGTA Coding sequence (CDS) from alignment at scaffold_431:74816..76070+ >TCONS_00065129 ID=TCONS_00065129|Name=TCONS_00065129|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_431:74816..76070+ (Clytia hemisphaerica)
AGCgaagattttcggaaaatttgggtaaatttgATATATAAAACCCAAAG
AATAGATATCAGTTTTTCTATCTATATCTATGCCACAGaatgtaaaagta
aaaaaaaacacttatctttttcttgttccttcTTCTTTACAGTACACAGT
CAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAAC
AACACACTTTCAATTACTTTTTGCCGTCCTTGCCAACTTGTTTGTACAGG
AGTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCTTCACCAA
TCACTTGCGCTACTGGAGCGACATTTCCCGACGACATTCATGAACATCAC
CACGCACATCTGCCACCATTTTGTATCTAACATGAGAAAGTTTGGGACAT
TATACGCATCATGGATGTATTCCCAAGAACGCATGAATTCTTGGATCACA
AGAAGGTGTAACAGCAAAGCCCGCATGGAGAGTACCGTTATGGATACCTA
CCAGCTCATGGACTGGGTAGTTTACTGTACACTGACCAACAAGTTTCCAG
AGGCAAACGATCCACAAAATGCGATATCAAAAAAGGTAAGCgaagatttt
cggaaaatttgggtaaatttgATATATAAAACCCAAAGAATAGATATCAG
TTTTTCTATCTATATCTATGCCACAGaatgtaaaagtaaaaaaaaacact
tatctttttcttgttccttcTTCTTTACAGTACACAGTCAACAATATCTG
GGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAACAACACACTTTCA
ATTACTTTTTGCCGTCCTTGCCAACTTGTTTGTACAGGAGTTCGAGAGGG
AACAAGGTTTGGATGCGCTTGAACAACACCTTCACCAATCACTTGCGCTA
CTGGAGCGACATTTCCCGACGACATTCATGAACATCACCACGCACATCTG
CCACCATTTTGTATCTAACATGAGAAAGTTTGGGACATTATACGCATCAT
GGATGTATTCCCAAGAACGCATGAATTCTTGGATCACAAGAAGGTGTAAC
AGCAAAGCCCGCATGGAGAGTACCGTTATGGATACCTACCAGCTCATGGA
CTGGGTAGTTTACTGTACACTGACCAACAAGTTTCCAGAGGCAAACGATC
CACAAAATGCGATATCAAAAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065129-exon-scaffold_431-1491911889:74816..75320 | TCONS_00065129-exon-scaffold_431-1491911889:74816..75320 | Clytia hemisphaerica | exon |
| TCONS_00065129-exon-scaffold_431-1510915933:74816..75320 | TCONS_00065129-exon-scaffold_431-1510915933:74816..75320 | Clytia hemisphaerica | exon |
| TCONS_00065129-exon-scaffold_431-1575043694:74816..75320 | TCONS_00065129-exon-scaffold_431-1575043694:74816..75320 | Clytia hemisphaerica | exon |
| TCONS_00065129-exon-scaffold_431-1491911889:75987..76070 | TCONS_00065129-exon-scaffold_431-1491911889:75987..76070 | Clytia hemisphaerica | exon |
| TCONS_00065129-exon-scaffold_431-1510915933:75987..76070 | TCONS_00065129-exon-scaffold_431-1510915933:75987..76070 | Clytia hemisphaerica | exon |
| TCONS_00065129-exon-scaffold_431-1575043694:75987..76070 | TCONS_00065129-exon-scaffold_431-1575043694:75987..76070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_431 | supercontig | scaffold_431:74816..76070 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025452 | DUF4218 |
Blast
The following BLAST results are available for this feature:
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