TCONS_00065120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065120
Unique NameTCONS_00065120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065120 ID=TCONS_00065120|Name=TCONS_00065120|organism=Clytia hemisphaerica|type=transcript|length=597bp
TGCAAAACAACTTCCCCATGGAAAGAACAATAAAAGCCAATAAGACTCTC
TCCCCAGTCTTGTTAACGAAAATGAGAAACTTGTACCCAATCCCGATGAG
GAGAAGCTTCAACATTCGGTTCTGGTTGCCTTCTTTTGCTTTGCAATCAG
CAAAATTGTTGTTCCTTGCGATATGAGTCACCAAGTTGGATTGACAGCTT
CCGTTCATCACGCCAGCGGCGGTTGCAATCACCCGCCCGATGACCAAAAT
CAAAATGAGATGTTTAGGAAATACGGAAGAAAGAAGAGTCAATACGGCAG
AAATCAGGGTCAATACTTCATGTACCATAGTCCAGTATTTCTGATTTGCT
GCGAATTTCTTGACCCGCTTTTGTGATCCTGCAAAATACAGCCCGCTGAC
CATCCCGGAATAATCGACCATCATCGTCATGGCGACAGCGCTAACAACAC
TAGCCTGTGCATCTCCAACACCCAAGACGGTCAGCCAGGCTTGATTCTTC
AAGATGGCACGGAAATATCCACACGCTTCTTGTAGTGTATCCCAAAATTG
GAATTCGATGTATTCTGGACAAACCGAATCAGGGTAACCAACTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00065120-protein

>TCONS_00065120-protein ID=TCONS_00065120-protein|Name=TCONS_00065120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
PVGYPDSVCPEYIEFQFWDTLQEACGYFRAILKNQAWLTVLGVGDAQASV
VSAVAMTMMVDYSGMVSGLYFAGSQKRVKKFAANQKYWTMVHEVLTLISA
VLTLLSSVFPKHLILILVIGRVIATAAGVMNGSCQSNLVTHIARNNNFAD
CKAKEGNQNRMLKLLLIGIGYKFLIFVNKTGERVLLAFIVLSMGKLFC
Run BLAST on NCBI

transcript from alignment at scaffold_430:28326..28922

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065120 ID=TCONS_00065120|Name=TCONS_00065120|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at scaffold_430:28326..28922 (Clytia hemisphaerica)
TACCAGTTGGTTACCCTGATTCGGTTTGTCCAGAATACATCGAATTCCAA
TTTTGGGATACACTACAAGAAGCGTGTGGATATTTCCGTGCCATCTTGAA
GAATCAAGCCTGGCTGACCGTCTTGGGTGTTGGAGATGCACAGGCTAGTG
TTGTTAGCGCTGTCGCCATGACGATGATGGTCGATTATTCCGGGATGGTC
AGCGGGCTGTATTTTGCAGGATCACAAAAGCGGGTCAAGAAATTCGCAGC
AAATCAGAAATACTGGACTATGGTACATGAAGTATTGACCCTGATTTCTG
CCGTATTGACTCTTCTTTCTTCCGTATTTCCTAAACATCTCATTTTGATT
TTGGTCATCGGGCGGGTGATTGCAACCGCCGCTGGCGTGATGAACGGAAG
CTGTCAATCCAACTTGGTGACTCATATCGCAAGGAACAACAATTTTGCTG
ATTGCAAAGCAAAAGAAGGCAACCAGAACCGAATGTTGAAGCTTCTCCTC
ATCGGGATTGGGTACAAGTTTCTCATTTTCGTTAACAAGACTGGGGAGAG
AGTCTTATTGGCTTTTATTGTTCTTTCCATGGGGAAGTTGTTTTGCA

Coding sequence (CDS) from alignment at scaffold_430:28326..28922

>TCONS_00065120 ID=TCONS_00065120|Name=TCONS_00065120|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_430:28326..28922 (Clytia hemisphaerica)
CCAGTTGGTTACCCTGATTCGGTTTGTCCAGAATACATCGAATTCCAATT
TTGGGATACACTACAAGAAGCGTGTGGATATTTCCGTGCCATCTTGAAGA
ATCAAGCCTGGCTGACCGTCTTGGGTGTTGGAGATGCACAGGCTAGTGTT
GTTAGCGCTGTCGCCATGACGATGATGGTCGATTATTCCGGGATGGTCAG
CGGGCTGTATTTTGCAGGATCACAAAAGCGGGTCAAGAAATTCGCAGCAA
ATCAGAAATACTGGACTATGGTACATGAAGTATTGACCCTGATTTCTGCC
GTATTGACTCTTCTTTCTTCCGTATTTCCTAAACATCTCATTTTGATTTT
GGTCATCGGGCGGGTGATTGCAACCGCCGCTGGCGTGATGAACGGAAGCT
GTCAATCCAACTTGGTGACTCATATCGCAAGGAACAACAATTTTGCTGAT
TGCAAAGCAAAAGAAGGCAACCAGAACCGAATGTTGAAGCTTCTCCTCAT
CGGGATTGGGTACAAGTTTCTCATTTTCGTTAACAAGACTGGGGAGAGAG
TCTTATTGGCTTTTATTGTTCTTTCCATGGGGAAGTTGTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040826XLOC_040826Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065120-proteinTCONS_00065120-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065120-exon-scaffold_430-1491911889:28326..28922TCONS_00065120-exon-scaffold_430-1491911889:28326..28922Clytia hemisphaericaexon
TCONS_00065120-exon-scaffold_430-1510915933:28326..28922TCONS_00065120-exon-scaffold_430-1510915933:28326..28922Clytia hemisphaericaexon
TCONS_00065120-exon-scaffold_430-1575043694:28326..28922TCONS_00065120-exon-scaffold_430-1575043694:28326..28922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_430supercontigscaffold_430:28326..28922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0891659	0.310591	0.405153	0.369926	0.38976	5.64275	6.93351	3.77558	4.19945	1.76013	2.37498	0.121624	0.126308	0	0.111439	7.68788	9.14623	0	0.101713	10.2552	12.2897	1.36293	3.33603	7.06841	9.11212	0.125379	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006968RUS_fam
Blast
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BLAST of TCONS_00065120 vs. Swiss-Prot (Human)
Match: RUS1 (RUS1 family protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.037e-20
Identity = 51/164 (31.10%), Postives = 87/164 (53.05%), Query Frame = -3 
Query:  104 PVGYPDSVCPEYIEFQFWDTLQEACGYFRAILKNQAWLTVLGVGDXXXXXXXXXXXXXXVDYSGMVSGLYFAGSQKRVKKFAANQKYWTMVHEVLTLISAVLTLLSSVFPKHLILILVIGRVIATAAGVMNGSCQSNLVTHIARNNNFADCKAKEGNQNRMLKL 595
            P G+PDSV P+Y+ +Q WD++Q         L  QA L  +GVG+A+A+V +A A  ++ D +GM+  + FA    +  K   N K W +  ++L  ++  L +++ V+P    + +    +      V  G+ ++ L  H AR NN AD  AK+ +Q  ++ L
Sbjct:   79 PQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFA--WWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNL 240
The following BLAST results are available for this feature:
BLAST of TCONS_00065120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RUS19.037e-2031.10RUS1 family protein C16orf58 OS=Homo sapiens GN=C1... [more]
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