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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065112 ID=TCONS_00065112|Name=TCONS_00065112|organism=Clytia hemisphaerica|type=transcript|length=3369bp
AATGtgtgataaaaaaattgatggAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCgcaaaatcaaaaactaaaaatagacaagCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAgga
ttgaaaatattcttctttGGACATTTTACCTTGTAGATTTTTTTTATGTC
ctcatctttgtttttatttttatcttatcTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCttattttactttcaaattttcattccattaattatttcttttt
ttctttattaaaggCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GGTAAGCTTCccttaaaagaaaagaacttgCTCGAGCTGAAGAAATGTAG
GCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGG
TTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATatattcaaa
gaaaacaaatatGACAAACCTTACTTTACTACATACTTTAAAACTGTTTT
CTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACC
AGATCAAACAATCTTGTACCAGAGGCCTtccaacaaagaaaatgttgaaa
GAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCA
AGCCATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACac
caccaaaatttgaaaacatgaCAGATGATGAAATTAGTTTAAATGGTGat
agtcaaaacaaaaaagtgaaGTTCAATGATGTACGAGAAGTACGTTCGCT
TGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACT
CTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTTGATCAGAAGCTTCCA
TTGAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTT
CGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCG
CTAATATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCT
TGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGGTAAGCTTCccttaaa
agaaaagaacttgCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGG
AGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTT
GGATCTGCAGAACTAAGTGACTATatattcaaagaaaacaaatatGACAA
ACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGA
TTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGT
ACCAGAGGCCTtccaacaaagaaaatgttgaaaGAAGTTTCAAGAGTTTC
ACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAA
CATCAGCCACCTCTACACCTGGATATATTACaccaccaaaatttgaaaac
atgaCAGATGATGAAATTAGTTTAAATGGTGatagtcaaaacaaaaaagt
gaaGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCGAAACGTCATGCAG
AAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGA
GGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAAAAGAAACTATCAA
ACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATC
AGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCC
ACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAG
TGCGGACtggttcaatttttcaaaactgttGTCAGTACTTGTTAGTTTTG
GTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAAGAAAGATTCCACA
GTTAATATTGGTGACTTATATGCCATTGGAGGTGCAATACTATACGCTAC
TTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGATCGTAAATTAGACA
TGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGCCTTGTTTTTTTGG
CCAGGCTTTTTCATTTTACATTACACTAATGTCGAGAGGTTTGAACTCCC
ACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAATGCAGCAATTGGAA
CCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTTTTTAACAAGCTCT
TTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCACTGTCAATGGCGTT
TGATATCATTGTACACAAGGTGCAATTTTCATACCTATTTTTTCTGGGAG
TTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCTTTTGACTCATTAC
GAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGATATTTGGTAATAC
CAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTACTTGAAAATGATG
CAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAGCTGTTCTTTATCT
ATAATCCCACATCGAAGAGTATATTGAACcttacaaaaattgaaaatagg
aAATCAAATTGTAAATAAATTAATATCAATTAATGCATTTTGTATTCAGA
TAATTCCAACAAAACAGGTAATATATTGTTCTGTTtggaaaaattaatag
aaattctataaatatttttttgataataattCTTTAAactttaagttttt
ctttttgttatttttgtatttggttaatttaatttttttttgggatGCAA
TTGACTATCTTAATGGAgg Run BLAST on NCBI transcript from alignment at scaffold_430:65024..68392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065112 ID=TCONS_00065112|Name=TCONS_00065112|organism=Clytia hemisphaerica|type=transcript|length=3369bp|location=Sequence derived from alignment at scaffold_430:65024..68392- (Clytia hemisphaerica)
AATGTGTGATAAAAAAATTGATGGAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCGCAAAATCAAAAACTAAAAATAGACAAGCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAGGA
TTGAAAATATTCTTCTTTGGACATTTTACCTTGTAGATTTTTTTTATGTC
CTCATCTTTGTTTTTATTTTTATCTTATCTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCTTATTTTACTTTCAAATTTTCATTCCATTAATTATTTCTTTTT
TTCTTTATTAAAGGCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GGTAAGCTTCCCTTAAAAGAAAAGAACTTGCTCGAGCTGAAGAAATGTAG
GCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGG
TTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATATATTCAAA
GAAAACAAATATGACAAACCTTACTTTACTACATACTTTAAAACTGTTTT
CTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACC
AGATCAAACAATCTTGTACCAGAGGCCTTCCAACAAAGAAAATGTTGAAA
GAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCA
AGCCATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACAC
CACCAAAATTTGAAAACATGACAGATGATGAAATTAGTTTAAATGGTGAT
AGTCAAAACAAAAAAGTGAAGTTCAATGATGTACGAGAAGTACGTTCGCT
TGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACT
CTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTTGATCAGAAGCTTCCA
TTGAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTT
CGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCG
CTAATATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCT
TGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGGTAAGCTTCCCTTAAA
AGAAAAGAACTTGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGG
AGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTT
GGATCTGCAGAACTAAGTGACTATATATTCAAAGAAAACAAATATGACAA
ACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGA
TTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGT
ACCAGAGGCCTTCCAACAAAGAAAATGTTGAAAGAAGTTTCAAGAGTTTC
ACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAA
CATCAGCCACCTCTACACCTGGATATATTACACCACCAAAATTTGAAAAC
ATGACAGATGATGAAATTAGTTTAAATGGTGATAGTCAAAACAAAAAAGT
GAAGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCGAAACGTCATGCAG
AAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGA
GGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAAAAGAAACTATCAA
ACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATC
AGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCC
ACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAG
TGCGGACTGGTTCAATTTTTCAAAACTGTTGTCAGTACTTGTTAGTTTTG
GTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAAGAAAGATTCCACA
GTTAATATTGGTGACTTATATGCCATTGGAGGTGCAATACTATACGCTAC
TTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGATCGTAAATTAGACA
TGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGCCTTGTTTTTTTGG
CCAGGCTTTTTCATTTTACATTACACTAATGTCGAGAGGTTTGAACTCCC
ACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAATGCAGCAATTGGAA
CCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTTTTTAACAAGCTCT
TTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCACTGTCAATGGCGTT
TGATATCATTGTACACAAGGTGCAATTTTCATACCTATTTTTTCTGGGAG
TTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCTTTTGACTCATTAC
GAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGATATTTGGTAATAC
CAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTACTTGAAAATGATG
CAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAGCTGTTCTTTATCT
ATAATCCCACATCGAAGAGTATATTGAACCTTACAAAAATTGAAAATAGG
AAATCAAATTGTAAATAAATTAATATCAATTAATGCATTTTGTATTCAGA
TAATTCCAACAAAACAGGTAATATATTGTTCTGTTTGGAAAAATTAATAG
AAATTCTATAAATATTTTTTTGATAATAATTCTTTAAACTTTAAGTTTTT
CTTTTTGTTATTTTTGTATTTGGTTAATTTAATTTTTTTTTGGGATGCAA
TTGACTATCTTAATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065112-exon-scaffold_430-1575043694:65024..68392 | TCONS_00065112-exon-scaffold_430-1575043694:65024..68392 | Clytia hemisphaerica | exon |
| TCONS_00065112-exon-scaffold_430-1510915933:65024..68392 | TCONS_00065112-exon-scaffold_430-1510915933:65024..68392 | Clytia hemisphaerica | exon |
| TCONS_00065112-exon-scaffold_430-1491911889:65024..68392 | TCONS_00065112-exon-scaffold_430-1491911889:65024..68392 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_430 | supercontig | scaffold_430:65024..68392 - |
Blast
BLAST of TCONS_00065112 vs. Swiss-Prot (Human)
Match: S35F5 (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=1 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 8.294e-91 Identity = 197/466 (42.27%), Postives = 285/466 (61.16%), Query Frame = 2
Query: 1697 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRGILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSADWFNFSKLLSVLVSFGGVFIVCWTDPAKKDSTVNIGDLYAIGGAILYATYLVLIRRKVGEDRKLDMPXXXXXXXXXXXXXXWPGFFILHYTNVERFELPPDLKTWLLLILNAAIGTLLSEILWLWGCFXXXXXXXXXXXXXXXXXSMAFDIIVHKVQFSYLFFLGVAPILISFVVVSLLTHYEGYDPVMNCFSKIFG------NTKQEPNPDER-ESLLENDAVA 3058
+ LG+++LL+VD IWV S+EL+ Y+F +Y+KP+F+T+ KT F +YL+GF + W +Q CTRGL K + + + S+ S P Y+ P KF ++ ++ S N D++ +V+F+++ E+R L HA LSRMS+ V+E IL ++ KL + K+S +F +W A L YQ AL++T ++ NILS+TSG+FTL AA FPS+S D F SKLL+V++S GGV +V K +G ++++ GA+LYA Y+V+I+RKV + KLD+P+FFGFVGLF L WPGFF+LHYT E FE P + + +I+N IGT+LSE LWLWGCFLTSSL+ TL+L L PLS+ D+ + KVQFS+LFF G P+ SF +V+LL HY +DPVM +IF ++ P E+ ESL+ +V+
Sbjct: 67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVS 517 HSP 2 Score: 147.132 bits (370), Expect = 9.983e-37 Identity = 91/242 (37.60%), Postives = 140/242 (57.85%), Query Frame = 2
Query: 914 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRSILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSAD 1624
+ LG+++LL+VD IWV S+EL+ Y+F +Y+KP+F+T+ KT F +YL+GF + W +Q CTRGL K + + + S+ S P Y+ P KF ++ ++ S N D++ +V+F+++ E+R L HA LSRMS+ V+E SIL ++ KL + K+S +F +W A L YQ AL++T ++ NILS+TSG+FTL AA FPS+S D
Sbjct: 67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGD 294
The following BLAST results are available for this feature:
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