TCONS_00065111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065111
Unique NameTCONS_00065111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065111 ID=TCONS_00065111|Name=TCONS_00065111|organism=Clytia hemisphaerica|type=transcript|length=2351bp
AATGtgtgataaaaaaattgatggAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCgcaaaatcaaaaactaaaaatagacaagCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAgga
ttgaaaatattcttctttGGACATTTTACCTTGTAGATTTTTTTTATGTC
ctcatctttgtttttatttttatcttatcTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCttattttactttcaaattttcattccattaattatttcttttt
ttctttattaaaggCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GAAACTGGCAGTACCAGATCAAACAATCTTGTACCAGAGGCCTtccaaca
aagaaaatgttgaaaGAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGA
GCATCTAAGGCAGCAAGCCATCTCATGTGAAACATCAGCCACCTCTACAC
CTGGATATATTACaccaccaaaatttgaaaacatgaCAGATGATGAAATT
AGTTTAAATGGTGatagtcaaaacaaaaaagtgaaGTTCAATGATGTTCG
AGAAGTACGTTCGCTTGCGAAACGTCATGCAGAAGCACAGATTTTGTCAA
GAATGTCCCATAACTCTGTTGAAGAGTTGAGAGGCATCTTACTTTCACTT
GATCAGAAGCTTCCATTAAAAGAAACTATCAAACTTTCAGTGTATTTTGT
TGTGTTGTGGGTTTTCGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATA
CAACACCATCAGTCGCTAATATCCTGTCAGCCACATCTGGAATTTTCACT
CTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGGACtggttcaattt
ttcaaaactgttGTCAGTACTTGTTAGTTTTGGTGGAGTTTTTATTGTTT
GCTGGACGGACCCTGCAAAGAAAGATTCCACAGTTAATATTGGTGACTTA
TATGCCATTGGAGGTGCAATACTATACGCTACTTATCTTGTCTTGATTAG
AAGAAAAGTTGGCGAGGATCGTAAATTAGACATGCCATTATTCTTTGGCT
TTGTTGGACTATTTGGTGCCTTGTTTTTTTGGCCAGGCTTTTTCATTTTA
CATTACACTAATGTCGAGAGGTTTGAACTCCCACCAGATCTGAAAACTTG
GCTTTTACTGATTCTAAATGCAGCAATTGGAACCCTTCTGTCAGAAATTT
TATGGTTGTGGGGTTGCTTTTTAACAAGCTCTTTGTTAGCTACTTTATCG
CTTGGTTTGGTTGCACCACTGTCAATGGCGTTTGATATCATTGTACACAA
GGTGCAATTTTCATACCTATTTTTTCTGGGAGTTGCACCAATCCTTATTT
CCTTTGTTGTTGTAAGCCTTTTGACTCATTACGAGGGCTATGATCCTGTC
ATGAATTGTTTTTCAAAGATATTTGGTAATACCAAACAGGAGCCCAACCC
TGACGAAAGGGAATCTTTACTTGAAAATGATGCAGTTGCCTGATTTTGGC
AAAATACAATTCACAGAAGCTGTTCTTTATCTATAATCCCACATCGAAGA
GTATATTGAACcttacaaaaattgaaaataggaAATCAAATTGTAAATAA
ATTAATATCAATTAATGCATTTTGTATTCAGATAATTCCAACAAAACAGG
TAATATATTGTTCTGTTtggaaaaattaatagaaattctataaatatttt
tttgataataattCTTTAAactttaagtttttctttttgttatttttgta
tttggttaatttaatttttttttgggatGCAATTGACTATCTTAATGGAg
g
Run BLAST on NCBI

transcript from alignment at scaffold_430:65024..68392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065111 ID=TCONS_00065111|Name=TCONS_00065111|organism=Clytia hemisphaerica|type=transcript|length=3369bp|location=Sequence derived from alignment at scaffold_430:65024..68392- (Clytia hemisphaerica)
AATGTGTGATAAAAAAATTGATGGAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCGCAAAATCAAAAACTAAAAATAGACAAGCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAGGA
TTGAAAATATTCTTCTTTGGACATTTTACCTTGTAGATTTTTTTTATGTC
CTCATCTTTGTTTTTATTTTTATCTTATCTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCTTATTTTACTTTCAAATTTTCATTCCATTAATTATTTCTTTTT
TTCTTTATTAAAGGCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GGTAAGCTTCCCTTAAAAGAAAAGAACTTGCTCGAGCTGAAGAAATGTAG
GCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGG
TTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATATATTCAAA
GAAAACAAATATGACAAACCTTACTTTACTACATACTTTAAAACTGTTTT
CTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACC
AGATCAAACAATCTTGTACCAGAGGCCTTCCAACAAAGAAAATGTTGAAA
GAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCA
AGCCATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACAC
CACCAAAATTTGAAAACATGACAGATGATGAAATTAGTTTAAATGGTGAT
AGTCAAAACAAAAAAGTGAAGTTCAATGATGTACGAGAAGTACGTTCGCT
TGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACT
CTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTTGATCAGAAGCTTCCA
TTGAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTT
CGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCG
CTAATATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCT
TGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGGTAAGCTTCCCTTAAA
AGAAAAGAACTTGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGG
AGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTT
GGATCTGCAGAACTAAGTGACTATATATTCAAAGAAAACAAATATGACAA
ACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGA
TTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGT
ACCAGAGGCCTTCCAACAAAGAAAATGTTGAAAGAAGTTTCAAGAGTTTC
ACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAA
CATCAGCCACCTCTACACCTGGATATATTACACCACCAAAATTTGAAAAC
ATGACAGATGATGAAATTAGTTTAAATGGTGATAGTCAAAACAAAAAAGT
GAAGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCGAAACGTCATGCAG
AAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGA
GGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAAAAGAAACTATCAA
ACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATC
AGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCC
ACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAG
TGCGGACTGGTTCAATTTTTCAAAACTGTTGTCAGTACTTGTTAGTTTTG
GTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAAGAAAGATTCCACA
GTTAATATTGGTGACTTATATGCCATTGGAGGTGCAATACTATACGCTAC
TTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGATCGTAAATTAGACA
TGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGCCTTGTTTTTTTGG
CCAGGCTTTTTCATTTTACATTACACTAATGTCGAGAGGTTTGAACTCCC
ACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAATGCAGCAATTGGAA
CCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTTTTTAACAAGCTCT
TTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCACTGTCAATGGCGTT
TGATATCATTGTACACAAGGTGCAATTTTCATACCTATTTTTTCTGGGAG
TTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCTTTTGACTCATTAC
GAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGATATTTGGTAATAC
CAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTACTTGAAAATGATG
CAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAGCTGTTCTTTATCT
ATAATCCCACATCGAAGAGTATATTGAACCTTACAAAAATTGAAAATAGG
AAATCAAATTGTAAATAAATTAATATCAATTAATGCATTTTGTATTCAGA
TAATTCCAACAAAACAGGTAATATATTGTTCTGTTTGGAAAAATTAATAG
AAATTCTATAAATATTTTTTTGATAATAATTCTTTAAACTTTAAGTTTTT
CTTTTTGTTATTTTTGTATTTGGTTAATTTAATTTTTTTTTGGGATGCAA
TTGACTATCTTAATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040822XLOC_040822Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065111-exon-scaffold_430-1575043694:67542..68392TCONS_00065111-exon-scaffold_430-1575043694:67542..68392Clytia hemisphaericaexon
TCONS_00065111-exon-scaffold_430-1575043694:65024..66523TCONS_00065111-exon-scaffold_430-1575043694:65024..66523Clytia hemisphaericaexon
TCONS_00065111-exon-scaffold_430-1510915933:67542..68392TCONS_00065111-exon-scaffold_430-1510915933:67542..68392Clytia hemisphaericaexon
TCONS_00065111-exon-scaffold_430-1510915933:65024..66523TCONS_00065111-exon-scaffold_430-1510915933:65024..66523Clytia hemisphaericaexon
TCONS_00065111-exon-scaffold_430-1491911889:67542..68392TCONS_00065111-exon-scaffold_430-1491911889:67542..68392Clytia hemisphaericaexon
TCONS_00065111-exon-scaffold_430-1491911889:65024..66523TCONS_00065111-exon-scaffold_430-1491911889:65024..66523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_430supercontigscaffold_430:65024..68392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.76662	8.02883	4.66604	3.45006	0.437504	1.57114	1.00323	0.608957	0.601879	0	0.0167449	1.08634	0.0654587	0.0540495	1.30354	1.61251	0.209904	0.982802	0.759651	0	1.438	1.58303	4.53749	5.85185	1.01949	0.147721	0.779672	0.883021	2.13708	1.46122
Blast
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BLAST of TCONS_00065111 vs. Swiss-Prot (Human)
Match: S35F5 (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 2.772e-74
Identity = 179/434 (41.24%), Postives = 253/434 (58.29%), Query Frame = 1 
Query:  775 FHSINYFFFSLLKATEMKKYVIKGS*NWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRGILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSADWFNFSKLLSVLVSFGGVFIVCWTDPAKKDSTVNIGDLYAIGGAILYATYLVLIRRKVGEDRKLDMPXXXXXXXXXXXXXXWPGFFILHYTNVERFELPPDLKTWLLLILNAAIGTLLSEILWLWGCFXXXXXXXXXXXXXXXXXSMAFDIIVHKVQFSYLFFLGVAPILISFVVVSLLTHYEGYDPVMNCFSKIFG------NTKQEPNPDER-ESLLENDAVA 2040
            F   N  FFS    T M    + G   W+   +Q CTRGL  K      +      +         +   S+ S P Y+ P KF ++  ++  S N D++      +V+F+++ E+R L   HA    LSRMS+  V+E   IL ++  KL   +  K+S +F  +W  A L YQ AL++T  ++ NILS+TSG+FTL  AA FPS+S D F  SKLL+V++S GGV +V      K      +G ++++ GA+LYA Y+V+I+RKV  + KLD+P+FFGFVGLF  L  WPGFF+LHYT  E FE P  +   + +I+N  IGT+LSE LWLWGCFLTSSL+ TL+L L  PLS+  D+ + KVQFS+LFF G  P+  SF +V+LL HY  +DPVM    +IF         ++ P   E+ ESL+   +V+
Sbjct:   94 FTQYNKPFFSTFAKTSMFVLYLLGFIIWK-PWRQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVS 517
The following BLAST results are available for this feature:
BLAST of TCONS_00065111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F52.772e-7441.24Solute carrier family 35 member F5 OS=Homo sapiens... [more]
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