TCONS_00065110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065110
Unique NameTCONS_00065110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065110 ID=TCONS_00065110|Name=TCONS_00065110|organism=Clytia hemisphaerica|type=transcript|length=3134bp
AATGtgtgataaaaaaattgatggAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCgcaaaatcaaaaactaaaaatagacaagCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAgga
ttgaaaatattcttctttGGACATTTTACCTTGTAGATTTTTTTTATGTC
ctcatctttgtttttatttttatcttatcTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCttattttactttcaaattttcattccattaattatttcttttt
ttctttattaaaggCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GAAACTGGCAGTACCAGATCAAACAATCTTGTACCAGAGGCCTtccaaca
aagaaaatgttgaaaGAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGA
GCATCTAAGGCAGCAAGCCATCTCATGTGAAACATCAGCCACCTCTACAC
CTGGATATATTACaccaccaaaatttgaaaacatgaCAGATGATGAAATT
AGTTTAAATGGTGatagtcaaaacaaaaaagtgaaGTTCAATGATGTACG
AGAAGTACGTTCGCTTGCGAAACGTCATGCAGAAGCACAGATTTTGTCAA
GAATGTCCCATAACTCTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTT
GATCAGAAGCTTCCATTGAAAGAAACTATCAAACTTTCAGTGTATTTTGT
TGTGTTGTGGGTTTTCGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATA
CAACACCATCAGTCGCTAATATCCTGTCAGCCACATCTGGAATTTTCACT
CTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGG
TAAGCTTCccttaaaagaaaagaacttgCTCGAGCTGAAGAAATGTAGGC
GAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTT
GATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATatattcaaaga
aaacaaatatGACAAACCTTACTTTACTACATACTTTAAAACTGTTTTCT
TCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAG
ATCAAACAATCTTGTACCAGAGGCCTtccaacaaagaaaatgttgaaaGA
AGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAG
CCATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACacca
ccaaaatttgaaaacatgaCAGATGATGAAATTAGTTTAAATGGTGatag
tcaaaacaaaaaagtgaaGTTCAATGATGTTCGAGAAGTACGTTCGCTTG
CGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACTCT
GTTGAAGAGTTGAGAGGCATCTTACTTTCACTTGATCAGAAGCTTCCATT
AAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCG
CTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCGCT
AATATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTG
TTTTCCCTCTTCAAGTGCGGACtggttcaatttttcaaaactgttGTCAG
TACTTGTTAGTTTTGGTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCA
AAGAAAGATTCCACAGTTAATATTGGTGACTTATATGCCATTGGAGGTGC
AATACTATACGCTACTTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGG
ATCGTAAATTAGACATGCCATTATTCTTTGGCTTTGTTGGACTATTTGGT
GCCTTGTTTTTTTGGCCAGGCTTTTTCATTTTACATTACACTAATGTCGA
GAGGTTTGAACTCCCACCAGATCTGAAAACTTGGCTTTTACTGATTCTAA
ATGCAGCAATTGGAACCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGC
TTTTTAACAAGCTCTTTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACC
ACTGTCAATGGCGTTTGATATCATTGTACACAAGGTGCAATTTTCATACC
TATTTTTTCTGGGAGTTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGC
CTTTTGACTCATTACGAGGGCTATGATCCTGTCATGAATTGTTTTTCAAA
GATATTTGGTAATACCAAACAGGAGCCCAACCCTGACGAAAGGGAATCTT
TACTTGAAAATGATGCAGTTGCCTGATTTTGGCAAAATACAATTCACAGA
AGCTGTTCTTTATCTATAATCCCACATCGAAGAGTATATTGAACcttaca
aaaattgaaaataggaAATCAAATTGTAAATAAATTAATATCAATTAATG
CATTTTGTATTCAGATAATTCCAACAAAACAGGTAATATATTGTTCTGTT
tggaaaaattaatagaaattctataaatatttttttgataataattCTTT
AAactttaagtttttctttttgttatttttgtatttggttaatttaattt
ttttttgggatGCAATTGACTATCTTAATGGAgg
Run BLAST on NCBI

transcript from alignment at scaffold_430:65024..68392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065110 ID=TCONS_00065110|Name=TCONS_00065110|organism=Clytia hemisphaerica|type=transcript|length=3369bp|location=Sequence derived from alignment at scaffold_430:65024..68392- (Clytia hemisphaerica)
AATGTGTGATAAAAAAATTGATGGAATTAAAGATAGGATATTTAAGGCCT
GTCAACAAGGCCAGTTAGAAGTTTTGAAAGAACTATTAAATTCAACTGAT
TTGGATCTAGACCATCAGTATGACAATGGAACTACATGCTTACATGAGGT
AGTTATTCATAATTGCCAGTATTATGATATGGTGAAACTTCTATTAGAAC
ATGGTGCATCAGTTAACATGCAAGACTCTGATGGGAATACACCTTTGCAT
TCTGCTGTTCTCTTCCACTGTGTAGAAAATGTCAAAGAACTCTTAAAATA
CAATCCTAATATTTATACAGAAAATTATGATGGTGCGACTGCTGTTGATT
TTGCTAGAAATATCAGTGATGATGAAGTAGAAAGGCTATTAACTGGGACT
GTAATCGCAAAATCAAAAACTAAAAATAGACAAGCTCGAAAAGTTACAAA
AAGTGTTAATTCAAAAGTGAAATCCTTTCTACCCACAACACCTATTATGT
CACCCTCCATTCTGAAGAAGAGGAAATTACTCCCAGAACAAGAATCCGTT
GAACCACCAGCAAAGCGGTCTTGTGTTCGATTTGCTGATTTACTAGAGGA
TTGAAAATATTCTTCTTTGGACATTTTACCTTGTAGATTTTTTTTATGTC
CTCATCTTTGTTTTTATTTTTATCTTATCTTGTGAATAGAAATACTTGTT
ACACATCTCAAAATAATGATCAACCATAGTGCATAAATTCTTTAACCTGT
CAGGTTCTTATTTTACTTTCAAATTTTCATTCCATTAATTATTTCTTTTT
TTCTTTATTAAAGGCAACTGAAATGAAAAAGTATGTCATCAAGGGATCAT
GGTAAGCTTCCCTTAAAAGAAAAGAACTTGCTCGAGCTGAAGAAATGTAG
GCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGG
TTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATATATTCAAA
GAAAACAAATATGACAAACCTTACTTTACTACATACTTTAAAACTGTTTT
CTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACC
AGATCAAACAATCTTGTACCAGAGGCCTTCCAACAAAGAAAATGTTGAAA
GAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCA
AGCCATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACAC
CACCAAAATTTGAAAACATGACAGATGATGAAATTAGTTTAAATGGTGAT
AGTCAAAACAAAAAAGTGAAGTTCAATGATGTACGAGAAGTACGTTCGCT
TGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACT
CTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTTGATCAGAAGCTTCCA
TTGAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTT
CGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCG
CTAATATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCT
TGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGGTAAGCTTCCCTTAAA
AGAAAAGAACTTGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGG
AGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTT
GGATCTGCAGAACTAAGTGACTATATATTCAAAGAAAACAAATATGACAA
ACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGA
TTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGT
ACCAGAGGCCTTCCAACAAAGAAAATGTTGAAAGAAGTTTCAAGAGTTTC
ACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAA
CATCAGCCACCTCTACACCTGGATATATTACACCACCAAAATTTGAAAAC
ATGACAGATGATGAAATTAGTTTAAATGGTGATAGTCAAAACAAAAAAGT
GAAGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCGAAACGTCATGCAG
AAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGA
GGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAAAAGAAACTATCAA
ACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATC
AGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCC
ACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAG
TGCGGACTGGTTCAATTTTTCAAAACTGTTGTCAGTACTTGTTAGTTTTG
GTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAAGAAAGATTCCACA
GTTAATATTGGTGACTTATATGCCATTGGAGGTGCAATACTATACGCTAC
TTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGATCGTAAATTAGACA
TGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGCCTTGTTTTTTTGG
CCAGGCTTTTTCATTTTACATTACACTAATGTCGAGAGGTTTGAACTCCC
ACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAATGCAGCAATTGGAA
CCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTTTTTAACAAGCTCT
TTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCACTGTCAATGGCGTT
TGATATCATTGTACACAAGGTGCAATTTTCATACCTATTTTTTCTGGGAG
TTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCTTTTGACTCATTAC
GAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGATATTTGGTAATAC
CAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTACTTGAAAATGATG
CAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAGCTGTTCTTTATCT
ATAATCCCACATCGAAGAGTATATTGAACCTTACAAAAATTGAAAATAGG
AAATCAAATTGTAAATAAATTAATATCAATTAATGCATTTTGTATTCAGA
TAATTCCAACAAAACAGGTAATATATTGTTCTGTTTGGAAAAATTAATAG
AAATTCTATAAATATTTTTTTGATAATAATTCTTTAAACTTTAAGTTTTT
CTTTTTGTTATTTTTGTATTTGGTTAATTTAATTTTTTTTTGGGATGCAA
TTGACTATCTTAATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040822XLOC_040822Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065110-exon-scaffold_430-1575043694:67542..68392TCONS_00065110-exon-scaffold_430-1575043694:67542..68392Clytia hemisphaericaexon
TCONS_00065110-exon-scaffold_430-1575043694:65024..67306TCONS_00065110-exon-scaffold_430-1575043694:65024..67306Clytia hemisphaericaexon
TCONS_00065110-exon-scaffold_430-1510915933:67542..68392TCONS_00065110-exon-scaffold_430-1510915933:67542..68392Clytia hemisphaericaexon
TCONS_00065110-exon-scaffold_430-1510915933:65024..67306TCONS_00065110-exon-scaffold_430-1510915933:65024..67306Clytia hemisphaericaexon
TCONS_00065110-exon-scaffold_430-1491911889:67542..68392TCONS_00065110-exon-scaffold_430-1491911889:67542..68392Clytia hemisphaericaexon
TCONS_00065110-exon-scaffold_430-1491911889:65024..67306TCONS_00065110-exon-scaffold_430-1491911889:65024..67306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_430supercontigscaffold_430:65024..68392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.245	5.51519	1.81876	1.17255	3.77272	1.91704	4.16499	4.53645	1.89172	1.46758	1.88533	1.04043	0.872135	0.000137738	1.7138	1.48343	2.4536	2.09454	1.82148	1.37452	1.25771	1.419	6.42372	5.78171	2.10888	3.04178	1.0003	1.20015	2.55268	5.47494
Blast
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BLAST of TCONS_00065110 vs. Swiss-Prot (Human)
Match: S35F5 (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.653e-91
Identity = 197/466 (42.27%), Postives = 285/466 (61.16%), Query Frame = 1 
Query: 1462 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRGILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSADWFNFSKLLSVLVSFGGVFIVCWTDPAKKDSTVNIGDLYAIGGAILYATYLVLIRRKVGEDRKLDMPXXXXXXXXXXXXXXWPGFFILHYTNVERFELPPDLKTWLLLILNAAIGTLLSEILWLWGCFXXXXXXXXXXXXXXXXXSMAFDIIVHKVQFSYLFFLGVAPILISFVVVSLLTHYEGYDPVMNCFSKIFG------NTKQEPNPDER-ESLLENDAVA 2823
            +   LG+++LL+VD IWV S+EL+ Y+F   +Y+KP+F+T+ KT  F +YL+GF   + W    +Q CTRGL  K      +      +         +   S+ S P Y+ P KF ++  ++  S N D++      +V+F+++ E+R L   HA    LSRMS+  V+E   IL ++  KL   +  K+S +F  +W  A L YQ AL++T  ++ NILS+TSG+FTL  AA FPS+S D F  SKLL+V++S GGV +V      K      +G ++++ GA+LYA Y+V+I+RKV  + KLD+P+FFGFVGLF  L  WPGFF+LHYT  E FE P  +   + +I+N  IGT+LSE LWLWGCFLTSSL+ TL+L L  PLS+  D+ + KVQFS+LFF G  P+  SF +V+LL HY  +DPVM    +IF         ++ P   E+ ESL+   +V+
Sbjct:   67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVS 517

HSP 2 Score: 97.0561 bits (240), Expect = 1.216e-20
Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = 1 
Query:  775 FHSINYFFFSLLKATEMKKYVIKGS*NWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRSILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSAD 1389
            F   N  FFS    T M    + G   W+   +Q CTRGL  K      +      +         +   S+ S P Y+ P KF ++  ++  S N D++      +V+F+++ E+R L   HA    LSRMS+  V+E  SIL ++  KL   +  K+S +F  +W  A L YQ AL++T  ++ NILS+TSG+FTL  AA FPS+S D
Sbjct:   94 FTQYNKPFFSTFAKTSMFVLYLLGFIIWK-PWRQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGD 294
The following BLAST results are available for this feature:
BLAST of TCONS_00065110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F52.653e-9142.27Solute carrier family 35 member F5 OS=Homo sapiens... [more]
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