TCONS_00065097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065097
Unique NameTCONS_00065097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065097 ID=TCONS_00065097|Name=TCONS_00065097|organism=Clytia hemisphaerica|type=transcript|length=414bp
TGAATGGGTACTGGCGAGTCACTGATGGTTTTGCATTTAGATGCGTTGAT
CTTCATTCCCCATTTGGAACAAGCGGTCTCAAGTTCAGCTGTcgatattt
ccaatttttcaaagattgcgGTCACAAGTGTAGTGTCATCAGCATACCTT
AGCTCCGTGGACATATTTTCTTTTAGTTCAAGGTGGTCATCGAGACTCTT
CAGCTCATCCATAACGAATTCCAGGAATATGTTAAATAGGACTGGAGATA
GCAGACAGCCTTGTCGTACACCAACCTTGACCTTGAACCAATTGGTGATT
TGTTTGTTAACAGCTACAGCACATTCAGCATTTGAGTAGATGCTTTCAAT
GATATCAACGATACGTTGGTCAATACCAATCGCACGCATCATTTTCCATA
ATGCTTCCCGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00065097-protein

>TCONS_00065097-protein ID=TCONS_00065097-protein|Name=TCONS_00065097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
WREALWKMMRAIGIDQRIVDIIESIYSNAECAVAVNKQITNWFKVKVGVR
QGCLLSPVLFNIFLEFVMDELKSLDDHLELKENMSTELRYADDTTLVTAI
FEKLEISTAELETACSKWGMKINASKCKTISDSPVPI
Run BLAST on NCBI

transcript from alignment at scaffold_43:34899..35312

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065097 ID=TCONS_00065097|Name=TCONS_00065097|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_43:34899..35312 (Clytia hemisphaerica)
CTGGCGGGAAGCATTATGGAAAATGATGCGTGCGATTGGTATTGACCAAC
GTATCGTTGATATCATTGAAAGCATCTACTCAAATGCTGAATGTGCTGTA
GCTGTTAACAAACAAATCACCAATTGGTTCAAGGTCAAGGTTGGTGTACG
ACAAGGCTGTCTGCTATCTCCAGTCCTATTTAACATATTCCTGGAATTCG
TTATGGATGAGCTGAAGAGTCTCGATGACCACCTTGAACTAAAAGAAAAT
ATGTCCACGGAGCTAAGGTATGCTGATGACACTACACTTGTGACcgcaat
ctttgaaaaattggaaatatcgACAGCTGAACTTGAGACCGCTTGTTCCA
AATGGGGAATGAAGATCAACGCATCTAAATGCAAAACCATCAGTGACTCG
CCAGTACCCATTCA

Coding sequence (CDS) from alignment at scaffold_43:34899..35312

>TCONS_00065097 ID=TCONS_00065097|Name=TCONS_00065097|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_43:34899..35312 (Clytia hemisphaerica)
TGGCGGGAAGCATTATGGAAAATGATGCGTGCGATTGGTATTGACCAACG
TATCGTTGATATCATTGAAAGCATCTACTCAAATGCTGAATGTGCTGTAG
CTGTTAACAAACAAATCACCAATTGGTTCAAGGTCAAGGTTGGTGTACGA
CAAGGCTGTCTGCTATCTCCAGTCCTATTTAACATATTCCTGGAATTCGT
TATGGATGAGCTGAAGAGTCTCGATGACCACCTTGAACTAAAAGAAAATA
TGTCCACGGAGCTAAGGTATGCTGATGACACTACACTTGTGACcgcaatc
tttgaaaaattggaaatatcgACAGCTGAACTTGAGACCGCTTGTTCCAA
ATGGGGAATGAAGATCAACGCATCTAAATGCAAAACCATCAGTGACTCGC
CAGTACCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040817XLOC_040817Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065097-proteinTCONS_00065097-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065097-exon-scaffold_43-1491911889:34899..35312TCONS_00065097-exon-scaffold_43-1491911889:34899..35312Clytia hemisphaericaexon
TCONS_00065097-exon-scaffold_43-1510915933:34899..35312TCONS_00065097-exon-scaffold_43-1510915933:34899..35312Clytia hemisphaericaexon
TCONS_00065097-exon-scaffold_43-1575043694:34899..35312TCONS_00065097-exon-scaffold_43-1575043694:34899..35312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:34899..35312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16708	3.19521	2.34251	1.96734	3.10873	2.58192	3.98508	4.85977	3.21026	2.05793	1.67877	1.27491	3.19695	3.39055	0.660047	0.837506	1.1219	1.06267	0	0.577531	0.428233	0.468311	1.24094	0.94028	5.34854	4.28719	1.79741	0.583851	0	0.556039
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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