TCONS_00065085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065085
Unique NameTCONS_00065085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=transcript|length=395bp
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA
ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG
ccaaatattttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATC
AGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGA
TGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATA
TTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTG
CCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCC
AATGAATGGTTTGTTGCCTGATGACATAGTTGACAAAATGGATGA
Run BLAST on NCBI

protein sequence of TCONS_00065085-protein

>TCONS_00065085-protein ID=TCONS_00065085-protein|Name=TCONS_00065085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
ILPRLTVFFFLFSSKVECNIILPYESPVEVIIEAKYFNVIATAVSLGITI
SGSNIPSSSSRLLASGDVIIIGGKITLKFEFNDIVFKRVDGNNIIVSDNL
PNFIKQNDNGLFATSLPMNGLLPDDIVDKMD
Run BLAST on NCBI

transcript from alignment at scaffold_43:10918..12783+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at scaffold_43:10918..12783+ (Clytia hemisphaerica)
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG ccaaatattttaatgtaaGATCTATTTCAAGTTCAAAGTTTCATATCCCA TCTTATTAGAAAAGAGAAGTTAATATTGGTTAAgagctttcattttattt ttttgtttggaaataAGCATTTGATGAAAGTTTAAAAGGATGCAATTTTG CTTGGAAGAAGATTTGATGAATTGGACACGAACATTCAGACTCATGCTTT GataaaaaacattattttacaGGTCATAGCAACGGCTGTGTCATTAGGGA TCACAATCAGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCT TCTGGTGATGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTT CAACGATATTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAG ATAATCTGCCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTAGT GAGTAAAGCTTTATTTTCTCAAGGACGGCNTCCAATTTTTATCAAGCCTT TTTGCTAGTGAGTGAAGCTTTAAGGGATCCTATTTCAGTTTCTAtaactc gggtaacttaatgcatgtcccaaaattgtattaatttttccgccccagtt ccagtccctaaaccataacaaactatacatttttggaagcgtatttagAT GTaaaataccgtattcggtgtaacttaaattctttctcagtataattaga gatatcttaagaaaacctgattatgacgtcatgattgatgacgtcataaa tacaaaaaattaaatatctcgagaaatataaatctaaactttatgaaatt tggaccagttaTAAAGTACATTGagttgtttgaaaaaattttgaaagtat ttcccaaaattaatgacgtcagcagaaattgcaatAATTcgagtttttgc aataaaatgctgacatcagcaaattttcaaattttttaaaagaaattctc ttcttcttgatgagttctatcatcTACCCATAAAATCGGTATGAAAAAac ctttccagcggtatatgatatgacatgttctggaacaaaaataaaaattt ttttcgggcatgcagactggtctgtaaattacttctGTAGCTcataactc ggacccagtccattttcagatatatgttgtgatgttttttagaatcagtg tgagaaaacctttccaacgatatatcatATGACATGCTTTGAAGATAAAA ATTTTCCAGAGCCATCCACTAttttcttgcctgggaggcattctggtctg taaaatacacaaacaggtgttccGGAAGTGGGTCAGaagcttaaaatgtt tcttaccccctaaggtaccactgtaccaaatttcatgctttctagtcAAA AACGCACAATTGATGCACACTTTCCCTGGACTATATGAACCTTTCCCTAT AAACATATCACGCTTCTTTTTGAGCACAAAAATATGGTAAAAGTTTTATT CTAGCTATAACTTTAACCACCCACCCGACAGTGGTCCCTACAACTTAATA CATTACCCCACTGGTCAAATGACAGCCCATAAGTTGGACAGTCCAGATTG AGGTCTGGTAGTGGTAATACAAAATGTCCCAGAGGATCTCGCCCCTATTC TTTTTGAcactgaaaaaaatgtttctctctATAAAAAAGTGTTTGAAAGT TGATTAggttcaaattcaaaatttaaaggttgatttatgatttcttttat tcattttgCAGCATCTCTGCCAATGAATGGTTTGTTGCCTGATGACATAG TTGACAAAATGGATGA

Coding sequence (CDS) from alignment at scaffold_43:10918..12783+

>TCONS_00065085 ID=TCONS_00065085|Name=TCONS_00065085|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_43:10918..12783+ (Clytia hemisphaerica)
attttgcCCAGACTTActgtatttttctttctttttagctCTAAAGTTGA
ATGCAACATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAG
ccaaatattttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATC
AGTGGATCAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGA
TGTAATTATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATA
TTGTGTTCAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTG
CCAAAttttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCC
AATGAATGGTTTGTTGCCTGATGACATAGTTGACAAAATGGATattttgc
CCAGACTTActgtatttttctttctttttagctCTAAAGTTGAATGCAAC
ATAATTTTGCCTTATGAATCACCAGTTGAAGTAATCATTGAAGccaaata
ttttaatGTCATAGCAACGGCTGTGTCATTAGGGATCACAATCAGTGGAT
CAAACATCCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGATGTAATT
ATAATTGGGGGAAAGATAACCTTGAAATTTGAGTTCAACGATATTGTGTT
CAAGAGGGTTGATGGAAACAATATAATTGTCTCAGATAATCTGCCAAAtt
ttatcaagcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCCAATGAAT
GGTTTGTTGCCTGATGACATAGTTGACAAAATGGATattttgcCCAGACT
TActgtatttttctttctttttagctCTAAAGTTGAATGCAACATAATTT
TGCCTTATGAATCACCAGTTGAAGTAATCATTGAAGccaaatattttaat
GTCATAGCAACGGCTGTGTCATTAGGGATCACAATCAGTGGATCAAACAT
CCCATCAAGTAGCTCTCGATTATTGGCTTCTGGTGATGTAATTATAATTG
GGGGAAAGATAACCTTGAAATTTGAGTTCAACGATATTGTGTTCAAGAGG
GTTGATGGAAACAATATAATTGTCTCAGATAATCTGCCAAAttttatcaa
gcaaaatgaTAATGGCCTTTTTGCTACATCTCTGCCAATGAATGGTTTGT
TGCCTGATGACATAGTTGACAAAATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040812XLOC_040812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065085-proteinTCONS_00065085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065085-exon-scaffold_43-1491911889:10918..11031TCONS_00065085-exon-scaffold_43-1491911889:10918..11031Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1510915933:10918..11031TCONS_00065085-exon-scaffold_43-1510915933:10918..11031Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1575043694:10918..11031TCONS_00065085-exon-scaffold_43-1575043694:10918..11031Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1491911889:11240..11465TCONS_00065085-exon-scaffold_43-1491911889:11240..11465Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1510915933:11240..11465TCONS_00065085-exon-scaffold_43-1510915933:11240..11465Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1575043694:11240..11465TCONS_00065085-exon-scaffold_43-1575043694:11240..11465Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1491911889:12729..12783TCONS_00065085-exon-scaffold_43-1491911889:12729..12783Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1510915933:12729..12783TCONS_00065085-exon-scaffold_43-1510915933:12729..12783Clytia hemisphaericaexon
TCONS_00065085-exon-scaffold_43-1575043694:12729..12783TCONS_00065085-exon-scaffold_43-1575043694:12729..12783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:10918..12783 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190741 0 0 0 2.82947 4.67503 6.13068 8.95357 9.48327 9.15834 10.6285 12.9573 6.34278 7.24574 0.216618 0.116232 0.715941 0 0 0 0 0 0 0 10.4443 8.59019 0 0 0 0.215696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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