TCONS_00065072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065072
Unique NameTCONS_00065072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065072 ID=TCONS_00065072|Name=TCONS_00065072|organism=Clytia hemisphaerica|type=transcript|length=379bp
ctTATGGATcggcaaccctagtacccccccgggcttAGACATTTCTTCGG
GCTTAGACATTTCTCCATCCTCTCTCTATGGTTAGTCCACGACAAATAGT
TCAAGCATGAAAATGATGCCTGTGAACGTTGTGTTGCAAACTGAAGATAT
CTCTATAATGTCactgaaacaaaaaatgatattttacaaaattatCATAA
AGATTTGCAACGGAAATAGAGAGAGAATAACCGGAATTTTCCTCCTGCTT
ATTTATTGCGAAATGGAGGTCCAATTATGAATTTTTTGATAGGAATAGTG
AGGTTGTGTTGACTTAATATATCAGAAATACAAATAAATTTATAGATATC
AtttgatgaattgaaaaatgCTATGGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_428:489683..490061

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065072 ID=TCONS_00065072|Name=TCONS_00065072|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_428:489683..490061 (Clytia hemisphaerica)
ATTCCATAGcatttttcaattcatcaaaTGATATCTATAAATTTATTTGT
ATTTCTGATATATTAAGTCAACACAACCTCACTATTCCTATCAAAAAATT
CATAATTGGACCTCCATTTCGCAATAAATAAGCAGGAGGAAAATTCCGGT
TATTCTCTCTCTATTTCCGTTGCAAATCTTTATGataattttgtaaaata
tcattttttgtttcagtGACATTATAGAGATATCTTCAGTTTGCAACACA
ACGTTCACAGGCATCATTTTCATGCTTGAACTATTTGTCGTGGACTAACC
ATAGAGAGAGGATGGAGAAATGTCTAAGCCCGAAGAAATGTCTaagcccg
ggggggtactagggttgccgATCCATAag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040801XLOC_040801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065072-exon-scaffold_428-1491911889:489683..490061TCONS_00065072-exon-scaffold_428-1491911889:489683..490061Clytia hemisphaericaexon
TCONS_00065072-exon-scaffold_428-1510915933:489683..490061TCONS_00065072-exon-scaffold_428-1510915933:489683..490061Clytia hemisphaericaexon
TCONS_00065072-exon-scaffold_428-1575043694:489683..490061TCONS_00065072-exon-scaffold_428-1575043694:489683..490061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:489683..490061 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.281434	0.222393	0.268307	0.502372	0	0	0	0.555952	0.138795	0	0	0	0	0	0	0	0	0	0	0	0	0.999859	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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