TCONS_00065071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065071
Unique NameTCONS_00065071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065071 ID=TCONS_00065071|Name=TCONS_00065071|organism=Clytia hemisphaerica|type=transcript|length=522bp
NAAGTTTTTCAAGAATGTCGAATAGTGTGGGTGATTGACGGTTATCGAAT
CGCAAACGAATCGACTCGAAATGCCAGTCACGAGGGATGTGGTCGAATGC
TACTGTCAGGTCGACGAAAATGATAAATAGGGGCTCTCTTTTTCGATCAG
TAATCTGTTGGATCCGTTTGATTGTGTAAATTCCTTCAGTTGTTCCCCTA
TCTTTCCGAAAACCATTATTTTCGTCACTTAGTTGTAGCTCGTACCAAGA
ACGAAGTGAAAAAATGAATCAGGctgattcatgatatgcaccatcaCAAT
ATCTTCCACGGACCAAATAACTGATTGGCAGcttattttacgtcacttaa
aaCCAATCAGCTGCTAGGTGCATTTATGATGTAATGTCtacagaagacat
tgcaatggtacaTATCATATCACGAATTCAGGATATGCACACattctgat
aaataacgagattgctcacgagaATTTTTAACCCGCGTGAGAAAACCCGC
Acatgtcaatcattttttagac
Run BLAST on NCBI

transcript from alignment at scaffold_428:457814..458335

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065071 ID=TCONS_00065071|Name=TCONS_00065071|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at scaffold_428:457814..458335 (Clytia hemisphaerica)
gtctaaaaaatgattgacatgTGCGGGTTTTCTCACGCGGGTTAAAAATt
ctcgtgagcaatctcgttatttatcagaatGTGTGCATATCCTGAATTCG
TGATATGATAtgtaccattgcaatgtcttctgtaGACATTACATCATAAA
TGCACCTAGCAGCTGATTGGttttaagtgacgtaaaataagCTGCCAATC
AGTTATTTGGTCCGTGGAAGATATTGtgatggtgcatatcatgaatcagC
CTGATTCATTTTTTCACTTCGTTCTTGGTACGAGCTACAACTAAGTGACG
AAAATAATGGTTTTCGGAAAGATAGGGGAACAACTGAAGGAATTTACACA
ATCAAACGGATCCAACAGATTACTGATCGAAAAAGAGAGCCCCTATTTAT
CATTTTCGTCGACCTGACAGTAGCATTCGACCACATCCCTCGTGACTGGC
ATTTCGAGTCGATTCGTTTGCGATTCGATAACCGTCAATCACCCACACTA
TTCGACATTCTTGAAAAACTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040800XLOC_040800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065071-exon-scaffold_428-1491911889:457814..458335TCONS_00065071-exon-scaffold_428-1491911889:457814..458335Clytia hemisphaericaexon
TCONS_00065071-exon-scaffold_428-1510915933:457814..458335TCONS_00065071-exon-scaffold_428-1510915933:457814..458335Clytia hemisphaericaexon
TCONS_00065071-exon-scaffold_428-1575043694:457814..458335TCONS_00065071-exon-scaffold_428-1575043694:457814..458335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:457814..458335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226695	0.66319	0.641689	1.25558	0.458566	0	0	0.409281	0.191031	0.236623	0.344508	0.301955	0.452303	0.23486	0.0643624	0.138141	1.02107	0.348856	0.120491	0.378255	0.328772	0.320727	0.129962	0	0.121696	0.760276	0	0.16587	0.251614	0.128177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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