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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065068 ID=TCONS_00065068|Name=TCONS_00065068|organism=Clytia hemisphaerica|type=transcript|length=1344bp
GTTATCTTTAATTtgtttttcgtgatttttatcATTGCCTTCAATGTTAT
CATCACTATCACTTTCATCATCTTGCTGAGGTTGTGCATTTTTATCAGTA
AGTAGTGACCATAATTCAGGGTCTCTTCTNTTATTGAAAATGTGATCGAT
TTGTCTGGCTACTGTGACAgggtttctttttaaatattgaacTTTTTCAC
TCCAGCTCATATTATTCACCTCTTCATCTGTTAGAGTTTCTCCGTATTGT
GTAGCGACTACTTTGATAATATTAGTCCATTTAAATAATGCTGCACTCCA
TGTAAGAAAGTATGTGCTAGGTCCAAACACACGACATTTAGCTAAAACAT
CCAACATCATGTTATGGCACCACTGTGGAGTTCCTCTAATATTCTTGAAT
gagttttggaaaatttggtcaTCATTTATCATTTGTCTAACGTTATCAGG
GTTGGTCAATGATCCTGCAGAAATATCACTTTGAAAGTGTTTTTGCTGTG
AAAAACTGATTGCACTAGCAACATTCGAGCTTTCCGTCCAATGCAAAGAA
TGAAATATGTACTGAGGATCTGAAGCAAATCTATCATCTGACGATTTCAG
CCTGGCATGGACATATTTTATTGGAGTTATATTCCTATCTCTAGGCGTAT
TGAAGTAATTCTTAGCATCAGGATAATGCCCTGGAAAAGCTAATGCTTCC
CAATCTGGTTCAGAATAGAATGACACAGGCAATTCGTTTTCGCACGGTGC
AATATTGACAATTTCATCAGATGATATAGGGGTGGGTTGTTTATGAGCAA
TCTCAATAGCTTGTTCTGAAGTAATATTTGCGCCTTCAATTTCATACATT
AGAGTTGGCTGGGAGGAATTGTTATCTTTAATTtgtttttcgtgattttt
atcATTGCCTTCAATGTTATCATCACTATCACTTTCATCATCTTGCTGAG
GTTGTGCATTTTTATCAGTAAGTAGTGACCATAATTCAGGGTCTCTTCTC
AAACTTTCATCTTCCCATCTCGCATTAGGTAcaacattttcataaaattt
atttatttcaactaacttttctaaagcttttgtaaCAAATGCAGGTCGGA
TATTTTGTTTATTCACATAGCTTTTATCTGTAAGACGTCGCTTTAAAGCG
AGTGATATTAAAAATTCTTCACTACAAACTCTTGgtaaaatcttttgaat
tttGTCTAGATTTGCCGGAACCATTACGCACTGCCCTTTGAGACCTTGCT
GTCCACCTTTATGTTTTGGTACAATAAACATGAAGGGAATAATTTGCGAC
ACAAGCATCATTTCTATGGGACACAAATTATCTAATTCAGGAAT Run BLAST on NCBI protein sequence of TCONS_00065068-protein >TCONS_00065068-protein ID=TCONS_00065068-protein|Name=TCONS_00065068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
IPELDNLCPIEMMLVSQIIPFMFIVPKHKGGQQGLKGQCVMVPANLDKIQ
KILPRVCSEEFLISLALKRRLTDKSYVNKQNIRPAFVTKALEKLVEINKF
YENVVPNARWEDESLRRDPELWSLLTDKNAQPQQDDESDSDDNIEGNDKN
HEKQIKDNNSSQPTLMYEIEGANITSEQAIEIAHKQPTPISSDEIVNIAP
CENELPVSFYSEPDWEALAFPGHYPDAKNYFNTPRDRNITPIKYVHARLK
SSDDRFASDPQYIFHSLHWTESSNVASAISFSQQKHFQSDISAGSLTNPD
NVRQMINDDQIFQNSFKNIRGTPQWCHNMMLDVLAKCRVFGPSTYFLTWS
AALFKWTNIIKVVATQYGETLTDEEVNNMSWSEKVQYLKRNPVTVARQID
HIFNXRRDPELWSLLTDKNAQPQQDDESDSDDNIEGNDKNHEKQIKDN Run BLAST on NCBI transcript from alignment at scaffold_428:406103..407446 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065068 ID=TCONS_00065068|Name=TCONS_00065068|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at scaffold_428:406103..407446 (Clytia hemisphaerica)
ATTCCTGAATTAGATAATTTGTGTCCCATAGAAATGATGCTTGTGTCGCA
AATTATTCCCTTCATGTTTATTGTACCAAAACATAAAGGTGGACAGCAAG
GTCTCAAAGGGCAGTGCGTAATGGTTCCGGCAAATCTAGACaaaattcaa
aagattttacCAAGAGTTTGTAGTGAAGAATTTTTAATATCACTCGCTTT
AAAGCGACGTCTTACAGATAAAAGCTATGTGAATAAACAAAATATCCGAC
CTGCATTTGttacaaaagctttagaaaagttagttgaaataaataaattt
tatgaaaatgttgTACCTAATGCGAGATGGGAAGATGAAAGTTTGAGAAG
AGACCCTGAATTATGGTCACTACTTACTGATAAAAATGCACAACCTCAGC
AAGATGATGAAAGTGATAGTGATGATAACATTGAAGGCAATgataaaaat
cacgaaaaacaAATTAAAGATAACAATTCCTCCCAGCCAACTCTAATGTA
TGAAATTGAAGGCGCAAATATTACTTCAGAACAAGCTATTGAGATTGCTC
ATAAACAACCCACCCCTATATCATCTGATGAAATTGTCAATATTGCACCG
TGCGAAAACGAATTGCCTGTGTCATTCTATTCTGAACCAGATTGGGAAGC
ATTAGCTTTTCCAGGGCATTATCCTGATGCTAAGAATTACTTCAATACGC
CTAGAGATAGGAATATAACTCCAATAAAATATGTCCATGCCAGGCTGAAA
TCGTCAGATGATAGATTTGCTTCAGATCCTCAGTACATATTTCATTCTTT
GCATTGGACGGAAAGCTCGAATGTTGCTAGTGCAATCAGTTTTTCACAGC
AAAAACACTTTCAAAGTGATATTTCTGCAGGATCATTGACCAACCCTGAT
AACGTTAGACAAATGATAAATGAtgaccaaattttccaaaactcATTCAA
GAATATTAGAGGAACTCCACAGTGGTGCCATAACATGATGTTGGATGTTT
TAGCTAAATGTCGTGTGTTTGGACCTAGCACATACTTTCTTACATGGAGT
GCAGCATTATTTAAATGGACTAATATTATCAAAGTAGTCGCTACACAATA
CGGAGAAACTCTAACAGATGAAGAGGTGAATAATATGAGCTGGAGTGAAA
AAgttcaatatttaaaaagaaacccTGTCACAGTAGCCAGACAAATCGAT
CACATTTTCAATAANAGAAGAGACCCTGAATTATGGTCACTACTTACTGA
TAAAAATGCACAACCTCAGCAAGATGATGAAAGTGATAGTGATGATAACA
TTGAAGGCAATgataaaaatcacgaaaaacaAATTAAAGATAAC Coding sequence (CDS) from alignment at scaffold_428:406103..407446 >TCONS_00065068 ID=TCONS_00065068|Name=TCONS_00065068|organism=Clytia hemisphaerica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_428:406103..407446 (Clytia hemisphaerica)
ATTCCTGAATTAGATAATTTGTGTCCCATAGAAATGATGCTTGTGTCGCA
AATTATTCCCTTCATGTTTATTGTACCAAAACATAAAGGTGGACAGCAAG
GTCTCAAAGGGCAGTGCGTAATGGTTCCGGCAAATCTAGACaaaattcaa
aagattttacCAAGAGTTTGTAGTGAAGAATTTTTAATATCACTCGCTTT
AAAGCGACGTCTTACAGATAAAAGCTATGTGAATAAACAAAATATCCGAC
CTGCATTTGttacaaaagctttagaaaagttagttgaaataaataaattt
tatgaaaatgttgTACCTAATGCGAGATGGGAAGATGAAAGTTTGAGAAG
AGACCCTGAATTATGGTCACTACTTACTGATAAAAATGCACAACCTCAGC
AAGATGATGAAAGTGATAGTGATGATAACATTGAAGGCAATgataaaaat
cacgaaaaacaAATTAAAGATAACAATTCCTCCCAGCCAACTCTAATGTA
TGAAATTGAAGGCGCAAATATTACTTCAGAACAAGCTATTGAGATTGCTC
ATAAACAACCCACCCCTATATCATCTGATGAAATTGTCAATATTGCACCG
TGCGAAAACGAATTGCCTGTGTCATTCTATTCTGAACCAGATTGGGAAGC
ATTAGCTTTTCCAGGGCATTATCCTGATGCTAAGAATTACTTCAATACGC
CTAGAGATAGGAATATAACTCCAATAAAATATGTCCATGCCAGGCTGAAA
TCGTCAGATGATAGATTTGCTTCAGATCCTCAGTACATATTTCATTCTTT
GCATTGGACGGAAAGCTCGAATGTTGCTAGTGCAATCAGTTTTTCACAGC
AAAAACACTTTCAAAGTGATATTTCTGCAGGATCATTGACCAACCCTGAT
AACGTTAGACAAATGATAAATGAtgaccaaattttccaaaactcATTCAA
GAATATTAGAGGAACTCCACAGTGGTGCCATAACATGATGTTGGATGTTT
TAGCTAAATGTCGTGTGTTTGGACCTAGCACATACTTTCTTACATGGAGT
GCAGCATTATTTAAATGGACTAATATTATCAAAGTAGTCGCTACACAATA
CGGAGAAACTCTAACAGATGAAGAGGTGAATAATATGAGCTGGAGTGAAA
AAgttcaatatttaaaaagaaacccTGTCACAGTAGCCAGACAAATCGAT
CACATTTTCAATAANAGAAGAGACCCTGAATTATGGTCACTACTTACTGA
TAAAAATGCACAACCTCAGCAAGATGATGAAAGTGATAGTGATGATAACA
TTGAAGGCAATgataaaaatcacgaaaaacaAATTAAAGATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065068-exon-scaffold_428-1491911889:406103..407446 | TCONS_00065068-exon-scaffold_428-1491911889:406103..407446 | Clytia hemisphaerica | exon |
| TCONS_00065068-exon-scaffold_428-1510915933:406103..407446 | TCONS_00065068-exon-scaffold_428-1510915933:406103..407446 | Clytia hemisphaerica | exon |
| TCONS_00065068-exon-scaffold_428-1575043694:406103..407446 | TCONS_00065068-exon-scaffold_428-1575043694:406103..407446 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:406103..407446 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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