TCONS_00065059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065059
Unique NameTCONS_00065059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065059 ID=TCONS_00065059|Name=TCONS_00065059|organism=Clytia hemisphaerica|type=transcript|length=622bp
CATATGGTTATAAAGGTTTCTTGGATAATATATATTATTATCTGTTAGCC
ATAAAGCTTCTATTCATACGGGAGTAATGTTAGAGAGAATTAGCTAAAAT
GTTTGTAACTATTCCCTAGtgtattcataaaagaaaatccatttatATCC
TAATTCGCTTCGCTCAAACGGATataacttattttctttttgaacaaaCT
AGGGAATCAAAGTATTCAATATGGATTACCGTGTATTTCGAAAGCACTAT
CATAAAGAAAGGGTAATAGGGTAGTAGACAGAATTAATCAAATTCCGAGG
TTCTTAGTTACAGATAATAATTCACTCAAATTGCTTTGTATATAACCATC
CTTAGCCTTTTCCGAACTCCATCTCCCATGTTGTTTAAAAAGTCTATCAG
AAACACCAGAATTTGCTGCTGCCGTTGCTCCCCCAGATCTGAGAATATGG
GTTCCGAAAAACCTTTTGTTCACTCCTATACTTTCGATAGCATTTAAGAT
TATATCCCGAGCTGAAGAGTAACAGATTGgcgtgtttttctttttaagca
aGTAAGAGTTCGTCGATTTGAAGTATGTCAAACCACGAAAGATAAACTCT
GACTCGGAAGCCttaatttttc
Run BLAST on NCBI

transcript from alignment at scaffold_428:32039..32660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065059 ID=TCONS_00065059|Name=TCONS_00065059|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at scaffold_428:32039..32660 (Clytia hemisphaerica)
gaaaaattaaGGCTTCCGAGTCAGAGTTTATCTTTCGTGGTTTGACATAC
TTCAAATCGACGAACTCTTACttgcttaaaaagaaaaacacgcCAATCTG
TTACTCTTCAGCTCGGGATATAATCTTAAATGCTATCGAAAGTATAGGAG
TGAACAAAAGGTTTTTCGGAACCCATATTCTCAGATCTGGGGGAGCAACG
GCAGCAGCAAATTCTGGTGTTTCTGATAGACTTTTTAAACAACATGGGAG
ATGGAGTTCGGAAAAGGCTAAGGATGGTTATATACAAAGCAATTTGAGTG
AATTATTATCTGTAACTAAGAACCTCGGAATTTGATTAATTCTGTCTACT
ACCCTATTACCCTTTCTTTATGATAGTGCTTTCGAAATACACGGTAATCC
ATATTGAATACTTTGATTCCCTAGtttgttcaaaaagaaaataagttatA
TCCGTTTGAGCGAAGCGAATTAGGATataaatggattttcttttatgaat
acaCTAGGGAATAGTTACAAACATTTTAGCTAATTCTCTCTAACATTACT
CCCGTATGAATAGAAGCTTTATGGCTAACAGATAATAATATATATTATCC
AAGAAACCTTTATAACCATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040788XLOC_040788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065059-exon-scaffold_428-1491911889:32039..32660TCONS_00065059-exon-scaffold_428-1491911889:32039..32660Clytia hemisphaericaexon
TCONS_00065059-exon-scaffold_428-1510915933:32039..32660TCONS_00065059-exon-scaffold_428-1510915933:32039..32660Clytia hemisphaericaexon
TCONS_00065059-exon-scaffold_428-1575043694:32039..32660TCONS_00065059-exon-scaffold_428-1575043694:32039..32660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:32039..32660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343777	0.204939	0.195506	0.0951569	0.0924422	0	0	0.192516	0.32285	0.0718336	0.329665	0	0.289538	0.248595	0.403201	0.176361	0.0816399	0.296863	0.182633	0.377543	0.199086	0.552549	0.323402	0.808406	0.388515	0.284439	0	0.298733	0.668953	0.194925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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