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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065058 ID=TCONS_00065058|Name=TCONS_00065058|organism=Clytia hemisphaerica|type=transcript|length=2310bp
CATATGGTTATAAAGGTTTCTTGGATAATATATATTATTATCTGTTAGCC
ATAAAGCTTCTATTCATACGGGAGTAATGTTAGAGAGAATTAGCTAAAAT
GTTTGTAACTATTCCCTAGtgtattcataaaagaaaatccatttatATCC
TAATTCGCTTCGCTCAAACGGATataacttattttctttttgaacaaaCT
AGGGAATCAAAGTATTCAATATGGATTACCGTGTATTTCGAAAGCACTAT
CATAAAGAAAGGGTAATAGGGTAGTAGACAGAATTAATCAAATTCCGAGG
TTCTTAGTTACAGATAATAATTCACTCAAATTGCTTTGTATATAACCATC
CTTAGCCTTTTCCGAACTCCATCTCCCATGTTGTTTAAAAAGTCTATCAG
AAACACCAGAATTTGCTGCTGCCGTTGCTCCCCCAGATCTGAGAATATGG
GTTCCGAAAAACCTTTTGTTCACTCCTATACTTTCGATAGCATTTAAGAT
TATATCCCGAGCTGAAGAGTAACAGATTGgcgtgtttttctttttaagca
aGTAAGAGTTCGTCGATTTGAAGTATGTCAAACCACGAAAGATAAACTCT
GACTCGGAAGCCttaatttttctgatgtatctTTTGAGAGAGCGAAATGG
ACATGTTATGTTATCAGTTCTAGCAATAAATACCCATTTTCCTGTACGAT
ATTGATCACATTTGCTTTTCTCAATGAAAATTCTCataaaatgtttataa
aaaatgatgTCTCCTTTTCGAATGTTTGCAAGTTCTTGGTACCTCAAAAA
TCCCGAGAAACCGATTAAAAACATAGTTACGAAGTTACATAGTCGAAGTT
GTTTTACGCAATCTGTATCGTCATTCTTACGCACGATCTGAATCAAATGG
TAGGGTGAGAGTGGCAGCTTCTTGATTTTGGGTCTCGATAGAATACGTTT
TGCTGCTTCCAGAAGGCATTTGACAATGTTGTTTTTACATGGATCTTCAT
GATTGCATATTTTGTGGAACCAACTGATTGCGTAAAatgagtttttgatt
ttattataagaatcATTTTGTTGTATCAAACTTGTCAAGTATATTGCCAC
GTATAACGGGTCAGCTGGTATTGCTTTTACTTCTTCGTAGTTTTGTGTCC
ACCTCGACCATTGTTCGAAACCATTACGGTACGTTTTTACTGTAGCATCG
GCACGGGATTTGGTGAGTATTGATGGAATCATTAACGCAACGTTGATTAG
AGCTGGATCTTCGATCTGATTAACcacttttaaaaagaaaagatagtTCA
AAATTATTCTAAGCTCGGGCTATAAGAGCCTGCACGAGGCTATAAGAGCC
TGCTACTAGGCTGTAGGAACCTTCCATTCGGCTATAAGAGCCTTCTATTC
GGCTATAAGAGCCTTCCATTCGGCCATAAGAGCCTGCCATTCGGCTGTAA
GAGCCTGCCACTAGGCTATAAGAGCCTGCCACTAGGCTATAAGAGCCTGC
CACTAGGCTTATAAGAGCCTGCTACTAGGCTATAGGAGCCTTCCATTCGG
CTATAAGAGCCTTCTATTCGGCTATAAGAGCCTTCCATTCGGCCATAAGA
GCCTGCCATTCGGCTGTAAGAGCCTGCCACTAGGCTATAAGAGCCTGCCA
CTAGGCTATAAGAGCCTGCCACTAGGCTTATAAGAGCCTGCTACTAGGCT
ATAGGAGCCTTCCATTCGGCTATAAGAGCCTTCCATTCGGCTATAAGAGC
CTTCCATTCGGCTATAAGAGCCTTCCATTTGGCCATAAGAGCCTGCCACT
CGGCTGTAAGAGCCTGCCACTAGGCTATAAGAGCTTGCCACTAGGCTATA
AGAGCCTGCCAATAGGCTATAAGAGCCTGCCACTAGGCTATAAGAGCCTG
CCACTGGGCTATATGAGCCTGCCATTGGGCTATAAGAGCCTGCCACTGGG
CTATAAGAGCCTGCCACTGGGCTATAAGAGCCTGCCACTGGGCTATAAGA
GCCTGCCAATTTCAAgcaatgatttttgatttaaactTTTCAGATCCTAg
cagagattttttttttttatatagtcCCAGTTTTAAAAATCCATTGGGTT
TTGAGAAgactaaattttcttttataaatggTTTAAATTGGTATCTGTTT
GAGATAAGAAGTGGCCAAAACGGTGCACTTTTCCATAGCGGAATAATGAG
GGAGGCGATGCACTTGAAAAACTCTAAATGTTTTatagtttttgaaatca
aaCTTATTGGAGGAACAAGCTAGTTATTTTCCGATTTCCAGTTTTGTGAG
AATGCATCTA Run BLAST on NCBI protein sequence of TCONS_00065058-protein >TCONS_00065058-protein ID=TCONS_00065058-protein|Name=TCONS_00065058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MIPSILTKSRADATVKTYRNGFEQWSRWTQNYEEVKAIPADPLYVAIYLT
SLIQQNDSYNKIKNSFYAISWFHKICNHEDPCKNNIVKCLLEAAKRILSR
PKIKKLPLSPYHLIQIVRKNDDTDCVKQLRLCNFVTMFLIGFSGFLRYQE
LANIRKGDIIFYKHFMRIFIEKSKCDQYRTGKWVFIARTDNITCPFRSLK
RYIRKIKASESEFIFRGLTYFKSTNSYLLKKKNTPICYSSARDIILNAIE
SIGVNKRFFGTHILRSGGATAAANSGVSDRLFKQHGRWSSEKAKDGYIQS
NLSELLSVTKNLGI Run BLAST on NCBI transcript from alignment at scaffold_428:30351..32660 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065058 ID=TCONS_00065058|Name=TCONS_00065058|organism=Clytia hemisphaerica|type=transcript|length=2310bp|location=Sequence derived from alignment at scaffold_428:30351..32660 (Clytia hemisphaerica)
TAGATGCATTCTCACAAAACTGGAAATCGGAAAATAACTAGCTTGTTCCT
CCAATAAGtttgatttcaaaaactatAAAACATTTAGAGTTTTTCAAGTG
CATCGCCTCCCTCATTATTCCGCTATGGAAAAGTGCACCGTTTTGGCCAC
TTCTTATCTCAAACAGATACCAATTTAAAccatttataaaagaaaattta
gtcTTCTCAAAACCCAATGGATTTTTAAAACTGGgactatataaaaaaaa
aaaatctctgcTAGGATCTGAAAagtttaaatcaaaaatcattgcTTGAA
ATTGGCAGGCTCTTATAGCCCAGTGGCAGGCTCTTATAGCCCAGTGGCAG
GCTCTTATAGCCCAGTGGCAGGCTCTTATAGCCCAATGGCAGGCTCATAT
AGCCCAGTGGCAGGCTCTTATAGCCTAGTGGCAGGCTCTTATAGCCTATT
GGCAGGCTCTTATAGCCTAGTGGCAAGCTCTTATAGCCTAGTGGCAGGCT
CTTACAGCCGAGTGGCAGGCTCTTATGGCCAAATGGAAGGCTCTTATAGC
CGAATGGAAGGCTCTTATAGCCGAATGGAAGGCTCTTATAGCCGAATGGA
AGGCTCCTATAGCCTAGTAGCAGGCTCTTATAAGCCTAGTGGCAGGCTCT
TATAGCCTAGTGGCAGGCTCTTATAGCCTAGTGGCAGGCTCTTACAGCCG
AATGGCAGGCTCTTATGGCCGAATGGAAGGCTCTTATAGCCGAATAGAAG
GCTCTTATAGCCGAATGGAAGGCTCCTATAGCCTAGTAGCAGGCTCTTAT
AAGCCTAGTGGCAGGCTCTTATAGCCTAGTGGCAGGCTCTTATAGCCTAG
TGGCAGGCTCTTACAGCCGAATGGCAGGCTCTTATGGCCGAATGGAAGGC
TCTTATAGCCGAATAGAAGGCTCTTATAGCCGAATGGAAGGTTCCTACAG
CCTAGTAGCAGGCTCTTATAGCCTCGTGCAGGCTCTTATAGCCCGAGCTT
AGAATAATTTTGAactatcttttctttttaaaagtgGTTAATCAGATCGA
AGATCCAGCTCTAATCAACGTTGCGTTAATGATTCCATCAATACTCACCA
AATCCCGTGCCGATGCTACAGTAAAAACGTACCGTAATGGTTTCGAACAA
TGGTCGAGGTGGACACAAAACTACGAAGAAGTAAAAGCAATACCAGCTGA
CCCGTTATACGTGGCAATATACTTGACAAGTTTGATACAACAAAATgatt
cttataataaaatcaaaaactcatTTTACGCAATCAGTTGGTTCCACAAA
ATATGCAATCATGAAGATCCATGTAAAAACAACATTGTCAAATGCCTTCT
GGAAGCAGCAAAACGTATTCTATCGAGACCCAAAATCAAGAAGCTGCCAC
TCTCACCCTACCATTTGATTCAGATCGTGCGTAAGAATGACGATACAGAT
TGCGTAAAACAACTTCGACTATGTAACTTCGTAACTATGTTTTTAATCGG
TTTCTCGGGATTTTTGAGGTACCAAGAACTTGCAAACATTCGAAAAGGAG
AcatcattttttataaacattttatGAGAATTTTCATTGAGAAAAGCAAA
TGTGATCAATATCGTACAGGAAAATGGGTATTTATTGCTAGAACTGATAA
CATAACATGTCCATTTCGCTCTCTCAAAagatacatcagaaaaattaaGG
CTTCCGAGTCAGAGTTTATCTTTCGTGGTTTGACATACTTCAAATCGACG
AACTCTTACttgcttaaaaagaaaaacacgcCAATCTGTTACTCTTCAGC
TCGGGATATAATCTTAAATGCTATCGAAAGTATAGGAGTGAACAAAAGGT
TTTTCGGAACCCATATTCTCAGATCTGGGGGAGCAACGGCAGCAGCAAAT
TCTGGTGTTTCTGATAGACTTTTTAAACAACATGGGAGATGGAGTTCGGA
AAAGGCTAAGGATGGTTATATACAAAGCAATTTGAGTGAATTATTATCTG
TAACTAAGAACCTCGGAATTTGATTAATTCTGTCTACTACCCTATTACCC
TTTCTTTATGATAGTGCTTTCGAAATACACGGTAATCCATATTGAATACT
TTGATTCCCTAGtttgttcaaaaagaaaataagttatATCCGTTTGAGCG
AAGCGAATTAGGATataaatggattttcttttatgaatacaCTAGGGAAT
AGTTACAAACATTTTAGCTAATTCTCTCTAACATTACTCCCGTATGAATA
GAAGCTTTATGGCTAACAGATAATAATATATATTATCCAAGAAACCTTTA
TAACCATATG Coding sequence (CDS) from alignment at scaffold_428:30351..32660 >TCONS_00065058 ID=TCONS_00065058|Name=TCONS_00065058|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_428:30351..32660 (Clytia hemisphaerica)
ATGATTCCATCAATACTCACCAAATCCCGTGCCGATGCTACAGTAAAAAC
GTACCGTAATGGTTTCGAACAATGGTCGAGGTGGACACAAAACTACGAAG
AAGTAAAAGCAATACCAGCTGACCCGTTATACGTGGCAATATACTTGACA
AGTTTGATACAACAAAATgattcttataataaaatcaaaaactcatTTTA
CGCAATCAGTTGGTTCCACAAAATATGCAATCATGAAGATCCATGTAAAA
ACAACATTGTCAAATGCCTTCTGGAAGCAGCAAAACGTATTCTATCGAGA
CCCAAAATCAAGAAGCTGCCACTCTCACCCTACCATTTGATTCAGATCGT
GCGTAAGAATGACGATACAGATTGCGTAAAACAACTTCGACTATGTAACT
TCGTAACTATGTTTTTAATCGGTTTCTCGGGATTTTTGAGGTACCAAGAA
CTTGCAAACATTCGAAAAGGAGAcatcattttttataaacattttatGAG
AATTTTCATTGAGAAAAGCAAATGTGATCAATATCGTACAGGAAAATGGG
TATTTATTGCTAGAACTGATAACATAACATGTCCATTTCGCTCTCTCAAA
agatacatcagaaaaattaaGGCTTCCGAGTCAGAGTTTATCTTTCGTGG
TTTGACATACTTCAAATCGACGAACTCTTACttgcttaaaaagaaaaaca
cgcCAATCTGTTACTCTTCAGCTCGGGATATAATCTTAAATGCTATCGAA
AGTATAGGAGTGAACAAAAGGTTTTTCGGAACCCATATTCTCAGATCTGG
GGGAGCAACGGCAGCAGCAAATTCTGGTGTTTCTGATAGACTTTTTAAAC
AACATGGGAGATGGAGTTCGGAAAAGGCTAAGGATGGTTATATACAAAGC
AATTTGAGTGAATTATTATCTGTAACTAAGAACCTCGGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065058-exon-scaffold_428-1491911889:30351..32660 | TCONS_00065058-exon-scaffold_428-1491911889:30351..32660 | Clytia hemisphaerica | exon |
| TCONS_00065058-exon-scaffold_428-1510915933:30351..32660 | TCONS_00065058-exon-scaffold_428-1510915933:30351..32660 | Clytia hemisphaerica | exon |
| TCONS_00065058-exon-scaffold_428-1575043694:30351..32660 | TCONS_00065058-exon-scaffold_428-1575043694:30351..32660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:30351..32660 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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