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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065052 ID=TCONS_00065052|Name=TCONS_00065052|organism=Clytia hemisphaerica|type=transcript|length=2536bp
gccaaagtacagtattcttataaaaaagggtgcatgtgctgggtatgtgc
agtcgtaaagggtcacttttttaaaAGGTCTCCCAAATCTCTTTAAAAGC
TACAAAAAGTCGAAAAGTCTTACTAAAGGTCAGTTTCGCTGATTTTGTCT
CTCTCTACAcgtttttaatataagaacaaactatataagaacataaggct
tcgatggccaagaacaagttaagaacattttaaggctttaaacacccaat
ttcttagaacaATGGAcaaaataactcaaaaaaatGGCGAGAATTAGTGT
ATTAAGAACAATTTCTGACTTgaaacaaaaagttaagagtatccgaaggc
ttcaagaatttggatgttcttataaaaaagattctgCAAGAATTTACATT
TTCGAGAGGCCCGGTCCGTAAATACCCGACATTTTCTAACCCTTGTAGGG
GGGGGGGCCTCCGAGGAATAGCGGAAAGTAGAAGGTTAAAAATGGAGAGA
AAATCTTATTGGAATTTAGAAAAGGTCTTAACGTTAATGTTAGCGATTGT
GTAAGGAAGGGATATATGAGTCTGTAATATTTGTTCTAATCATCTTTCTC
TTGCCGCTAATCAAGCTTCTATATTGATTTTGGTAGTTAATAAGAATATG
TTGTTAAATAAACTTTCGCCAAAGAGATctcaaagaaacaaaacaaataa
aagcTTTTATTGCGTCGACCAGCGAAAGACGACTAGCAAATAACGAATAG
AAAAACTGCTAATAAAACACCTTCACAAAATAATTTAAGAAGAAGTACAA
ATAGAATTGAAAGATAGTCTcaagaaaagttttgaaaaaggaaCTTGGAA
TTCACTATAAAAAAGAGTCTAAGGACTAAAGATGAACCGCATATGTTAAC
CAAGACATAAAATTTTGTTGGAATTTTTCTTGATTGAGGGGACTGAAATC
CTTGTCTTATTTGATTCGGTAATATAAGAAAAGTTTTACCAGCTCAATTG
AATTTGGTTATGGATTTGTCATTAATCTTAATAAAATCGAGATATATCGT
TTACTGGATTGtgctttttatcattttaaaagTTTCCCCAACATATGGGT
CATCACATCTGATTCCAATATGCATACCAAAGACATACCACATTCAATGC
CCACCAAATCAAAGAATACATGTCGAAAGTGCATTGCTTGGACGAGATAG
TCAACAACAGAGTCAAGCTTGTGGTAGCAGAGCACGTGTTTTTGTGAGAT
GTGTAGCTGATGTCAAAGGAAGTATATTACATCGGTGTGAAGGAAGAGCA
CGGTGTGACTTAAAGGTGAATTTCCAAGAGTTCAATAACCCGTGTAGTTA
TCCTGATGGAGAGCATTTGATGTTAAAGTACAGTTGTTTGGAAGGTAAAG
ACATTATTTAGGATAAAAATTAGGGGGTAGAGGACATAACATTCTTCATG
TACTATCCATGGACATAAGAAGTCTGGCTCCCCAGTCTGGTTGCCCAAGC
AACCAGTTTGACCCTCCCAGAACAATAGATTCTTGCCCCTCGAAAGTGTG
GATTACCCCCCTGATTATAAAATACCCTTAATAATATAGCTTATAACATT
TCTCCGATGTACAAATATTTTCTCGAAGAGactaccttaagagaagaaat
tttcgcggaaataaatttcgcggttcacagctcaaaattcggaagtttca
cggaattaaatttcgcggttgagagaactttttatttgttctgcgaaaat
ttcttcccttcgATAAAAACTCGTAGCTTACTTAGTATACATCTTAACAA
ACGAATATCGAGACTCAAAAGAAGATTCTCAGCCTTGAAGTTGACGCAAT
GAACCTGATCTGATCCAAGAATCGTCTTTCCCAGTCAGATACAATGTCAT
TTCTCCTCCACGATCGGCAAAATCTAGTGCTATTGAATCTGGTCCACACG
CAGGGAGACATGTGGTAGGTTTAAGAAGAGTGATGTAAGTTGATTCATCa
attaaaaataagaaagaaaatacCACGTTAAGAATTATCGAGTACCAATT
TCCACTGTAGCAGCAATCGCAAATGAGAAATGGCATTAGCTTTTCATTCG
GAAACACTCGGGGAAACAGTGCCACTAATTCATCTTTTCCCAAAGTTCCA
TCACTGAAGCACCAGTTTCCAGTACCTTTCTCTCCGTGGCCAGTATAGTA
AATAACAGGTTGAAATTTTTTACCACATGCTTGAAGGAGATCCTTGATTT
TCCTTATTGCTTCATTCTTCGTCAGTCGGTCATCTTTAACAGTGTTGAAT
TTATAAAAGTTGTTCAATCGAAGCGCATCTTCCATATTTGCAATGTCTTT
AGCAACTCCAGGTAAAAAGTTACCATTTCTGGCTTTCGAGCGCCGTCTGG
AAACTATGATGTTATTCGGGGGACTTAAAGCCCCTGACAAAATCAACCAT
TTTGAGTCGTTTTGTACAATGCCTTCATGCTTTAGGTTACAAATTTTGTA
TTTAGATACTTTAGATATATCTAAAGCCATTACTGC Run BLAST on NCBI transcript from alignment at scaffold_428:443763..446703- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065052 ID=TCONS_00065052|Name=TCONS_00065052|organism=Clytia hemisphaerica|type=transcript|length=2941bp|location=Sequence derived from alignment at scaffold_428:443763..446703- (Clytia hemisphaerica)
GCCAAAGTACAGTATTCTTATAAAAAAGGGTGCATGTGCTGGGTATGTGC
AGTCGTAAAGGGTCACTTTTTTAAAAGGTCTCCCAAATCTCTTTAAAAGC
TACAAAAAGTCGAAAAGTCTTACTAAAGGTCAGTTTCGCTGATTTTGTCT
CTCTCTACACGTTTTTAATATAAGAACAAACTATATAAGAACATAAGGCT
TCGATGGCCAAGAACAAGTTAAGAACATTTTAAGGCTTTAAACACCCAAT
TTCTTAGAACAATGGACAAAATAACTCAAAAAAATGGCGAGAATTAGTGT
ATTAAGAACAATTTCTGACTTGAAACAAAAAGTTAAGAGTATCCGAAGGC
TTCAAGAATTTGGATGTTCTTATAAAAAAGATTCTGCAAGAATTTACATT
TTCGAGAGGCCCGGTCCGTAAATACCCGACATTTTCTAACCCTTGTAGGG
GGGGGGGCCTCCGAGGAATAGCGGAAAGTAGAAGGTTAAAAATGGAGAGA
AAATCTTATTGGAATTTAGAAAAGGTCTTAACGTTAATGTTAGCGATTGT
GTAAGGAAGGGATATATGAGTCTGTAATATTTGTTCTAATCATCTTTCTC
TTGCCGCTAATCAAGCTTCTATATTGATTTTGGTAGTTAATAAGAATATG
TTGTTAAATAAACTTTCGCCAAAGAGATCTCAAAGAAACAAAACAAATAA
AAGCTTTTATTGCGTCGACCAGCGAAAGACGACTAGCAAATAACGAATAG
AAAAACTGCTAATAAAACACCTTCACAAAATAATTTAAGAAGAAGTACAA
ATAGAATTGAAAGATAGTCTCAAGAAAAGTTTTGAAAAAGGAACTTGGAA
TTCACTATAAAAAAGAGTCTAAGGACTAAAGATGAACCGCATATGTTAAC
CAAGACATAAAATTTTGTTGGAATTTTTCTTGATTGAGGGGACTGAAATC
CTTGTCTTATTTGATTCGGTAATATAAGAAAAGTTTTACCAGCTCAATTG
AATTTGGTTATGGATTTGTCATTAATCTTAATAAAATCGAGATATATCGT
TTACTGGATTGTGCTTTTTATCATTTTAAAAGGTAAGCTTCATACTACAC
GCTTTTTTTATAAACACACCCAAAATTTTTAAAGCCTTCGGATGTTATTA
ACTTTTTGAGTTTTAAGCCTAAACATGTTCTTATTTTGACCATTTTGTGA
GTATTTTTGACCATTTTCCTAAGAGAAAGGGTGTTTTTGACTCATTTCGG
TAAGCTAGCCCAAAGACAATACAGCAAAACCATGAAGGTGATAAACATTA
GGAGCTAGAAATAGCTATATATCTTTGGATAAGGTCTTACTCTTCCCCTG
CATAACACGGTGAATTTGACCTTTAATCTTTAACATATACCTGCCACATA
TGTTGGCAATCCATTTGAAGAATGAATTCAACTGAACTAGATTTCATTTA
TCTGACTTATGTAAACATGTTTAAAAATTATTCATAGTTTCCCCAACATA
TGGGTCATCACATCTGATTCCAATATGCATACCAAAGACATACCACATTC
AATGCCCACCAAATCAAAGAATACATGTCGAAAGTGCATTGCTTGGACGA
GATAGTCAACAACAGAGTCAAGCTTGTGGTAGCAGAGCACGTGTTTTTGT
GAGATGTGTAGCTGATGTCAAAGGAAGTATATTACATCGGTGTGAAGGAA
GAGCACGGTGTGACTTAAAGGTGAATTTCCAAGAGTTCAATAACCCGTGT
AGTTATCCTGATGGAGAGCATTTGATGTTAAAGTACAGTTGTTTGGAAGG
TAAAGACATTATTTAGGATAAAAATTAGGGGGTAGAGGACATAACATTCT
TCATGTACTATCCATGGACATAAGAAGTCTGGCTCCCCAGTCTGGTTGCC
CAAGCAACCAGTTTGACCCTCCCAGAACAATAGATTCTTGCCCCTCGAAA
GTGTGGATTACCCCCCTGATTATAAAATACCCTTAATAATATAGCTTATA
ACATTTCTCCGATGTACAAATATTTTCTCGAAGAGACTACCTTAAGAGAA
GAAATTTTCGCGGAAATAAATTTCGCGGTTCACAGCTCAAAATTCGGAAG
TTTCACGGAATTAAATTTCGCGGTTGAGAGAACTTTTTATTTGTTCTGCG
AAAATTTCTTCCCTTCGATAAAAACTCGTAGCTTACTTAGTATACATCTT
AACAAACGAATATCGAGACTCAAAAGAAGATTCTCAGCCTTGAAGTTGAC
GCAATGAACCTGATCTGATCCAAGAATCGTCTTTCCCAGTCAGATACAAT
GTCATTTCTCCTCCACGATCGGCAAAATCTAGTGCTATTGAATCTGGTCC
ACACGCAGGGAGACATGTGGTAGGTTTAAGAAGAGTGATGTAAGTTGATT
CATCAATTAAAAATAAGAAAGAAAATACCACGTTAAGAATTATCGAGTAC
CAATTTCCACTGTAGCAGCAATCGCAAATGAGAAATGGCATTAGCTTTTC
ATTCGGAAACACTCGGGGAAACAGTGCCACTAATTCATCTTTTCCCAAAG
TTCCATCACTGAAGCACCAGTTTCCAGTACCTTTCTCTCCGTGGCCAGTA
TAGTAAATAACAGGTTGAAATTTTTTACCACATGCTTGAAGGAGATCCTT
GATTTTCCTTATTGCTTCATTCTTCGTCAGTCGGTCATCTTTAACAGTGT
TGAATTTATAAAAGTTGTTCAATCGAAGCGCATCTTCCATATTTGCAATG
TCTTTAGCAACTCCAGGTAAAAAGTTACCATTTCTGGCTTTCGAGCGCCG
TCTGGAAACTATGATGTTATTCGGGGGACTTAAAGCCCCTGACAAAATCA
ACCATTTTGAGTCGTTTTGTACAATGCCTTCATGCTTTAGGTTACAAATT
TTGTATTTAGATACTTTAGATATATCTAAAGCCATTACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065052-exon-scaffold_428-1575043694:445622..446703 | TCONS_00065052-exon-scaffold_428-1575043694:445622..446703 | Clytia hemisphaerica | exon |
| TCONS_00065052-exon-scaffold_428-1575043694:443763..445216 | TCONS_00065052-exon-scaffold_428-1575043694:443763..445216 | Clytia hemisphaerica | exon |
| TCONS_00065052-exon-scaffold_428-1510915933:445622..446703 | TCONS_00065052-exon-scaffold_428-1510915933:445622..446703 | Clytia hemisphaerica | exon |
| TCONS_00065052-exon-scaffold_428-1510915933:443763..445216 | TCONS_00065052-exon-scaffold_428-1510915933:443763..445216 | Clytia hemisphaerica | exon |
| TCONS_00065052-exon-scaffold_428-1491911889:445622..446703 | TCONS_00065052-exon-scaffold_428-1491911889:445622..446703 | Clytia hemisphaerica | exon |
| TCONS_00065052-exon-scaffold_428-1491911889:443763..445216 | TCONS_00065052-exon-scaffold_428-1491911889:443763..445216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:443763..446703 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029030 | Caspase-like_dom |
Blast
The following BLAST results are available for this feature:
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