TCONS_00065047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065047
Unique NameTCONS_00065047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065047 ID=TCONS_00065047|Name=TCONS_00065047|organism=Clytia hemisphaerica|type=transcript|length=847bp
tcacaaacaaacaaaacagaaaatatgGCAGAAGCTGAAACAATAAAGAC
TGCAGTAGCTTGGTGTTTTGGATACGGCTCACTGGTAGAATCCTACCATA
ACAAAGCGAAATATGTTGAAGTGAATATCAATTATCGAAGAGTGTGGAAT
GCATGGAATACAAAAGCACGTGCAACTTTCCTTGGTCTTgaaaagacaat
tgaaaaaCATGCAGTCAACGGAGTGATATATCCCATATATTcacaaaaag
aaattgaagagcTCGACCTTCGTGAACAAGGTTACTCGCGACTCGCCATT
CCTCACGAGGACGTCAAAGTTTTGAACGAAGGCTTAAACGAAACCATGCA
AGATATGAAATTAGATTCATCTATGCTTTTGTTCACTTATGTTCCAAACT
GTGATGGAAATGCGCCTGAAGCTTGGTTCCCAATTCTACAAAGTTACGTC
GATTTATGTGCTAATGGATTTTTACGTTTCCGCAAAGAAGAGCAACCACG
CGATGCCAGCGACCCCGTTAGAAGATTCTTGGACACCACTCATAAATGGT
CAAAATACATGTTAAACGATCGTGTTTTAGCACGTCGACCCTGGGTGAGC
gagaaaaatcaatttgtgattgATGATTACTTAGATGACGAGGATGACGT
CAACGATATCCCGGCCGCTTTGTATCCGACCGATTTTTCTGTCCGCTTCT
TTAGAGAAATTCAAGAAGGACTTATGACGTGTGGTACTGACCGTAAAAGA
TATGTCTCCGATAATTCGATTTGTCattaacaaaaaagttaaaactttaA
CTGAAATCATAGGACTTTTTAACTTTAGGGCTTGTTTAGATAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_428:371131..377480-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065047 ID=TCONS_00065047|Name=TCONS_00065047|organism=Clytia hemisphaerica|type=transcript|length=6350bp|location=Sequence derived from alignment at scaffold_428:371131..377480- (Clytia hemisphaerica)
TCACAAACAAACAAAACAGAAAATATGGCAGAAGCTGAAACAATAAAGAC
TGCAGTAGCTTGGTGTTTTGGATACGGCTCACTGGTAGAATCCTACCATA
ACAAAGCGAAATATGTTGAAGTGAATATCAATTATCGAAGAGTGTGGAAT
GCATGGAATACAAAAGCACGTGCAACTTTCCTTGGTCTTGAAAAGACAAT
TGAAAAACATGCAGTCAACGGAGTGATATATCCCATATATTCACAAAAAG
AAATTGAAGAGCTCGACCTTCGTGAACAAGGTACACATTGCTTTTTATAA
GCAACCAGGTTGCTATCGAGCTCTGAGATTAGCCTAAACTTTTTTACTAT
CTCGTAAAGTAGAAGCTGATTAGATAATCTAACCATGGCAAATGATAGCC
CTTGACCTAATAAGCATAAATATGGCATAATATCAGGGTTGGTCAAATAA
AATTTCCTGACCCGAAAATTGAGATGCTTATTAGAAAAATGTGAATTCAA
TTCATAAAATGCCAGAAAACGGGAGGGGCACAGCTGGAGAGTGCTTCCCA
TTCTATTTGAGAAGATTTTATGGTTAAGACGTTTTTACGTAAAGATTGTC
TTGCGAAAAAACCTTTATCAAACAAAACTTTCTGAAATACACCAGAGACA
CGCCATCAAAGGTTCGCGAGACTTTGCTCTAAAAATAAAAATAAAAACTG
GCATTAAAGGTTCTAATTATTTCAAAATCAACTCCTTAAGGGGGTAGTCA
TATGAGAAATTTGAAATGTCATTTTTTAAACTTTTTGTTATATCTTCTGA
AGTAGTAAATATTTTTCAATAAAACTTTCCACAATTGTAGCACAACTATA
AAGGATTTGAAAAATTAAAAAAAAATTCTAAAAATAGTAAAGACGGGGGT
AATATCGTCCAGGGGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGCGTCAACTCTGCGTACGACGCGTAAACATGGCTTT
AAGTCAATAAAAGTGCATTTTCTCATCAAAAAACATATTGCCAACAAAAT
ATATCATCCTTGTGGTCTCTCAAATCTGTTTATATCATTTACAGGTGAAT
TTCAGTGTTGATCTTAGGGAAACATGTCTTCGGCGGGTTGAACGTCAATC
ATGATGCAATGCATAGTTTTACTCAATTTTCCAGGATCGCCTCTGGCGCC
ATGATTCATCAAAGACTAGATTTCCACTGGATTTAAGACTCACAATGGAT
ACATCATTGAATACGTTTGGTTCCTTTTATTCATAGTCTATAGTCCGTCA
CTTTGAAAAGTTTTTTTCGGTGTACAAGTTTTACTGCTCGAAAACATCAG
TTCGCAGAATCAAATTGTTGCTTTCACTCAAATTATAGGCTTCCAATAAG
CTTTCCCAGTTGTGAGAAATGAAATGAAACATTCAATAATATCATAATTC
AATCCAAAACAATACATAAGCTCAGTTTCCATGTCAAAAACACAGCTGAT
TGCCTCCAAAATGTGAATGTTTTTGAAAATACCACTTCTTTGGTTACCAT
CTTTAATTACGTCATATCAAGAAATCCCGGGGAAAAAAGGCGGTATTGAC
TTAGACGCCCGGAAAGGGCGTAAAAAGAGCTTTCATTTGATATGTCATGA
TGCTATGTTTAGAGCAGCCATACGGAAATGAGGCCCTAGCAACGGATGCG
ATTTCCCGTTGCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTTCAGGGTATGTTCAGGAAGCATAA
AAGATCCTAAAAAGCCCTAAATCCCGAAATTGATAAATTTTTCACCAAAT
TTCAAAATCTCATATGACTACCCCCTTAATCTATACTCGTAAATATGATC
CTATGCTTCTTTCAGGTTACTCGCGACTCGCCATCCCTCACGAAGACGTC
AAAGTTTTGAACGAAGGCTTAAACGAAACCATGCTAAACATGAAATTAGA
TGCATCCATGCTTTTGTTCACTTATGTTCCAAACTGTGATGGAAATGCAC
CTGAAGCTTGGTTCCCAATTCTACAAAGTTACGTCGATTTATGCGCCAAT
GGATTTTTACGTTTCCGAAAAGACGGGCAACCACGCGATGCCAGCGACCC
TGTTAGACGATTCTTAGACACCACTCATAAATGGTCGAAATACATGTTAA
ACGATCGTGTTTTAGCACGTCGACCCTGGGTGAGCGAGAAAAATCAATTT
GTGATTGATGATTACTTAGATGATGAGGATGACGTCAACGATATCCCGGC
CGCTTTGTATCCGACCGATTTTTCTGTCCGCTTCTTTAGAGAAATTCAAG
AAGGACTTATGACGTGTGGTACTGACCGTAAAAGATATGTCTCCGATAAT
TCGATTTGTCATTAACAAAAAAGTTAAAACTTTAACTGAAATCATAGGAC
TTTTTAACTTTAGGGCTTGTTTAGATAATGCTAGAATATAAAATTCATTT
ATTAAATTCATTGCTGCAACTTTTTTTCTGAAGTTAATCGGATGTTTGAG
AACGAATTTTACCCTCTATGTCCGCTTATGGAGGGAAAAGAGATTATCGA
CCACTCGTTTTTGTCCATTTATCCATGTCCAATTGAGTTTCGATCTTTAG
AAACTTTTATTTCAACTTTAACTAGAAATTTCGTCCGATGGTGCAGGTGA
AGGCACGACGCGCCAGGTACGGCGGGGGGGGCCCCCCCCCCCGGGGGGGG
GGGCCCCCCCCCCCGGGGGGGGGGGCCCCCCCCCCCGGGGGGGGGGGCCC
CCCCCCCCGGGGGGGGGGGCCCCCCCCCCCGGGGGGGGGGGCCCCCCCCC
CCGGGGGGGGGGGGTACAGCAGCCGCCGTACCAGATTTTCACAAAAAATC
TCGAAATCTTCCGCTCGTCGGTAAAATCGTTCAAATTTCCTCATTCACCG
TACCAGATTTAAAAAGCTTCCGTCGTGCCTGGAGGTGCCCACCTTTTATA
GTGTCCACTTACTTTTAAGACAAACTTTATAGGTTTAGCATCATTGACAA
TCCCTCAGGGACGAATACCAGTAGGGTTGGGAGCTATATGACTTTATAAT
GTCCATAAATTAGAAGTCTTAAATTCTCAACCTCTTTGAGGCACCAAGCT
TTTAAGTTTTCTAATATAAGATTTTTCCTTTTGCTTCTTTTTAGTGAGTA
GAATTTGAAACTCTGTCCCGCCAACGTCATTCAAATAGTTAGTCATATGG
CTAGTTTATAATGTTAAGACAAGTGTAATTCGATCTGATAAATGACCACT
ATATAATACTTTTTAACACCCTTTTTTCACGCATGACTTTTAGTTCGATG
ATATGATATCTAGTCAGATCTAGTTAGCATTTCCATTTTAGTATTAGCAA
AACATCACGAACAGAATAGGGTCTATTTTATTTAATAAGATGCATGTGCC
CTTATAAATTGACTCACGTTTAGTTGACTTAACGAGTTTTGGAGAAAAGA
GCTAAAAAAATTTTACCAAATTTACTTGTGATTTGGTATGCATCAAAATT
TGATAGCATCTACATCTGAGGTATTGAAAGGTGTGAGAGCATTGAATGAG
CTTCGCGTGAGTGTAATGAGACTACTGAGAGGGGTGAGTGCCGTGAGTGC
ATCGAATGAGTCTAGTGAGTGCCTAAAAAGCTTAAATTCTTTGATATTAT
ACCTTATTGGGGAAAAAATGTCAGGGAAAAGTGACGAAAATTCTTAGGGG
GTGACGAAATTTTTCACCGACGAAATATTTCCCCGACATTTTATCACCTG
ACCAAAACTTGTACCCGATTTTTTTATCCCCGACAAAAACAATTACCTCA
AATTTTTCGGCAACCAAAATTCAAATCTAATTTTTTACACCTTTATTTAC
CGAAATTAGTGCTTTAAACGTCGAATTACAAGATCTATTTTCGAGCTAGT
GAAGGAAACCATTTCTTTTGGAAAGTTTAGTCGGGTGATGATAGTGACGA
ATTTGAAATTTTGGTTGGGGAAAAGTGACGAAAATGCCTCTAGGTGACAA
AACTTTTCCCCGACATTTTTTTCCCGATAAGGTATTCGATGAGTTGAGCT
ACGTCATATCTTCTTCGCCCTGAGTGCAGAACTTCAAAAACATTAGACTG
TAAAAATTTTAGGCAATGCTGTTGGTTGGTTGGCTGAGTGATAGGTACTT
TATTCTTTTTTGTGGAATCTTTATTTCAGATTTATACTGGCTAAAAGCAA
CAATCTTTTCATTTATGTCAAATTTATCGAACAAAATGATAGAAGAAATC
AACCCTGAACAAACAGCTATAGCTTGGTGTTTTGGATACGGCTCACTGGT
AGAATCCTACCATAACAAAGCGAAATATGTTGAAGTGAATATCAATTATC
GAAGAGTGTGGAATGCATGGAACACAAAAGCACGTGCAACTTTCCTTGGT
CTTGAAAAGACAATCGAAAAACATGCAGTCAACGGAGTGATATATCCCAT
ATATTCACAAAAAGAAATTGAAGATCTCGACCTTCGTGAACAAGGTACAC
ATTGCTTTTTATAAGCAACCAGGTTGCTATCGAGCTCTGAGATTAGCCTA
AACTTTTTTACAACAGTATCTCGTAAAGTAGAAGCTTCTTAGATAATCTA
ACCATGGTAAATGATAGTCCTTGACCCAATAAGCATAAATATGGTATAAT
ATCAGGGTTGGTCAAAGCAAATTTCCTGACCCGAGAATTGGAGTTTCTTA
TGAAAAAATGTATTTAATTTATAAAATGACAGAAAACAGAGGACCACAGC
AGGAGAGATGGAGCGAAGGGGTCCAATCTTAGGAGGGTAAATTGTTTTTG
GTTAGACAAAAGATTGTGTTTTTGACATTCATTTGAGGGGCAGGAATAGC
TTTAATACTAATAGAGACTCAGCGGTTTTCGTGATGGGGTGATTGACGTT
TTTTCAAGTTCGTGATTTTGTGATTGAATATTTTTCAAGTGCGTGATTAC
GTGATAGGAGGAACTAAAATGGTCAACGTGATCGTGATAGAAAGGAAATT
TACTCCTGATAACGTGATTTGGAGTTTTTTATTGCATGATTTAAAAGGTG
ACTGGGGGGGGGGCTCTTAATACCATCTGCTTTCCATTCTATTTGAGAAG
ATTTTATGGTTAATATGTTTTTACGATTGTAAAGATTGCCTTGAAAACCT
TTATCAATCAAAAGCTCCTGAAATGCACGAGAGACACGCCATCATCCTTC
TAGATCCGGAGATATCAGCCTTTAAAGTTTGAACTAGCGACTTTCTTTAA
AAAACTTAGAAAAAAATGGCCGTGGCACATTTTTTAAAGGGTTAATCTAT
ACTCATAATGTAATCCTTTGCACTTTCTTTTAGGTTACTCGCGACTCGCC
ATTCCTCACGAGGACGTCAAAGTTTTGAACGAAGGCTTAAACGAAACCAT
GCAAGATATGAAATTAGATTCATCTATGCTTTTGTTCACTTATGTTCCAA
ACTGTGATGGAAATGCGCCTGAAGCTTGGTTCCCAATTCTACAAAGTTAC
GTCGATTTATGTGCTAATGGATTTTTACGTTTCCGCAAAGAAGAGCAACC
ACGCGATGCCAGCGACCCCGTTAGAAGATTCTTGGACACCACTCATAAAT
GGTCAAAATACATGTTAAACGATCGTGTTTTAGCACGTCGACCCTGGGTG
AGCGAGAAAAATCAATTTGTGATTGATGATTACTTAGATGACGAGGATGA
CGTCAACGATATCCCGGCCGCTTTGTATCCGACCGATTTTTCTGTCCGCT
TCTTTAGAGAAATTCAAGAAGGACTTATGACGTGTGGTACTGACCGTAAA
AGATATGTCTCCGATAATTCGATTTGTCATTAACAAAAAAGTTAAAACTT
TAACTGAAATCATAGGACTTTTTAACTTTAGGGCTTGTTTAGATAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040781XLOC_040781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065047-exon-scaffold_428-1575043694:377201..377480TCONS_00065047-exon-scaffold_428-1575043694:377201..377480Clytia hemisphaericaexon
TCONS_00065047-exon-scaffold_428-1575043694:371131..371697TCONS_00065047-exon-scaffold_428-1575043694:371131..371697Clytia hemisphaericaexon
TCONS_00065047-exon-scaffold_428-1510915933:377201..377480TCONS_00065047-exon-scaffold_428-1510915933:377201..377480Clytia hemisphaericaexon
TCONS_00065047-exon-scaffold_428-1510915933:371131..371697TCONS_00065047-exon-scaffold_428-1510915933:371131..371697Clytia hemisphaericaexon
TCONS_00065047-exon-scaffold_428-1491911889:377201..377480TCONS_00065047-exon-scaffold_428-1491911889:377201..377480Clytia hemisphaericaexon
TCONS_00065047-exon-scaffold_428-1491911889:371131..371697TCONS_00065047-exon-scaffold_428-1491911889:371131..371697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:371131..377480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.4157	71.1276	80.3273	85.3063	146.621	125.875	62.5491	49.7498	14.9375	20.9359	3.34403	8.16076	6.16345	6.71776	18.6127	27.7862	23.4017	24.4407	4.7691	6.16557	0	2.39779	45.911	38.4036	5.31699	5.98148	14.6053	20.9889	13.5754	15.9951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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