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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065024 ID=TCONS_00065024|Name=TCONS_00065024|organism=Clytia hemisphaerica|type=transcript|length=1913bp
TTCAATAGCACTAGATTTTGCCGATCGTGGAGGAGAAATGACATTGTATC
TGACTGGGAAAGACGATTCTTGGATCAGATCAGGTTCATTGCGTCAACTT
CAAGGCTGAGAATCTTCTTTTGAGTCTCGATATTCGTTTGTTAAGATGTA
TACTAAGATAACTACACGGGTTATTGAACTCTTGGAAATTCACCTTTAAG
TCACACCGTGCTCTTCCTTCACACCGATGTAATATACTTCCTTTGACATC
AGCTACACATCTCACAAAAACACGTGCTCTGCTACCACAAGCTTGACTCT
GTTGTTGACTATCTCGTCCAAGCAATGCACTTTCGACATGTATTCTTTGA
TTTGGTGGGCATTGAATGTGGTATGTCTTTGGTATGCATATTGGAATCAG
ATGTGATGACCCATATGTTGGGGAAACTATgaataatttttaaacatgtt
taCATAAGTCAGATAAATGAAATCTAGTTCAGTTGAATTCATTCTTCAAA
TGGATTGCCAACATATGTGGCAGGTATATGTTAAAGATTAAAGGTCAAAT
TCACCGTGTTATGCAGGGGAAGAGTAAGACCTTATCCAAAGATATATAGC
TATTTCTAGCTCCTAATGTTTATCACCTTCATGGTTTTGCTGTATTGTCT
TTGGGCTAGCTTACCGAAATGAGTCAAAAACACCCTTtctcttaggaaaa
tggtcaaaaatactcacaaaatggtcaaaataagaacatgtttaggctta
aaactcaaaaagttaataacatccgaaggctttaaaaattttgggtgtgt
ttataaaaaaagcgtgtagtatgAAGCTTACcttttaaaatgataaaaag
caCAATCCAGTAAACGATATATCTCGATTTTATTAAGATTAATGACAAAT
CCATAACCAAATTCAATTGAGCTGGTAAAACTTTTCTTATATTACCGAAT
CAAATAAGACAAGGATTTCAGTCCCCTCAATCAAGAAAAATTCCAACAAA
ATTTTATGTCTTGGTTAACATATGCGGTTCATCTTTAGTCCTTAGACTCT
TTTTTATAGTGAATTCCAAGttcctttttcaaaacttttcttgAGACTAT
CTTTCAATTCTATTTGTACTTCTTCTTAAATTATTTTGTGAAGGTGTTTT
ATTAGCAGTTTTTCTATTCGTTATTTGCTAGTCGTCTTTCGCTGGTCGAC
GCAATAAAAgcttttatttgttttgtttctttgagATCTCTTTGGCGAAA
GTTTATTTAACAACATATTCTTATTAACTACCAAAATCAATATAGAAGCT
TGATTAGCGGCAAGAGAAAGATGATTAGAACAAATATTACAGACTCATAT
ATCCCTTCCTTACACAATCGCTAACATTAACGTTAAGACCTTTTCTAAAT
TCCAATAAGATTTTCTCTCCATTTTTAACCTTCTACTTTCCGCTATTCCT
CGGAGGCCCCCCCCCCTACAAGGGTTAGAAAATGTCGGGTATTTACGGAC
CGGGCCTCTCGAAAATGTAAATTCTTGcagaatcttttttataagaacat
ccaaattcttgaagccttcggatactcttaactttttgtttcAAGTCAGA
AATTGTTCTTAATACACTAATTCTCGCCatttttttgagttattttgTCC
ATtgttctaagaaattgggtgtttaaagccttaaaatgttcttaacttgt
tcttggccatcgaagccttatgttcttatatagtttgttcttatattaaa
aacgTGTAGAGAGAGACAAAATCAGCGAAACTGACCTTTAGTAAGACTTT
TCGACTTTTTGTAGCTTTTAAAGAGATTTGGGAGACCTtttaaaaaagtg
accctttacgactgcacatacccagcacatgcacccttttttataagaat
actgtactttggc Run BLAST on NCBI transcript from alignment at scaffold_428:444362..446703+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065024 ID=TCONS_00065024|Name=TCONS_00065024|organism=Clytia hemisphaerica|type=transcript|length=2342bp|location=Sequence derived from alignment at scaffold_428:444362..446703+ (Clytia hemisphaerica)
TTCAATAGCACTAGATTTTGCCGATCGTGGAGGAGAAATGACATTGTATC
TGACTGGGAAAGACGATTCTTGGATCAGATCAGGTTCATTGCGTCAACTT
CAAGGCTGAGAATCTTCTTTTGAGTCTCGATATTCGTTTGTTAAGATGTA
TACTAAGTAAGCTACGAGTTTTTATcgaagggaagaaattttcgcagaac
aaataaaaagttctctcaaccgcgaaatttaattccgtgaaacttccgaa
ttttgagctgtgaaccgcgaaatttatttccgcgaaaatttcttctctta
aggtagtCTCTTCGAGAAAATATTTGTACATCGGAGAAATGTTATAAGCT
ATATTATTAAGGGTATTTTATAATCAGGGGGGTAATCCACACTTTCGAGG
GGCAAGAATCTATTGTTCTGGGAGGGTCAAACTGGTTGCTTGGGCAACCA
GACTGGGGAGCCAGACTTCTTATGTCCATGGATAGTACATGAAGAATGTT
ATGTCCTCTACCCCCTAATTTTTATCCTAAATAATGTCTTTACCTTCCAA
ACAACTGTACTTTAACATCAAATGCTCTCCATCAGGATAACTACACGGGT
TATTGAACTCTTGGAAATTCACCTTTAAGTCACACCGTGCTCTTCCTTCA
CACCGATGTAATATACTTCCTTTGACATCAGCTACACATCTCACAAAAAC
ACGTGCTCTGCTACCACAAGCTTGACTCTGTTGTTGACTATCTCGTCCAA
GCAATGCACTTTCGACATGTATTCTTTGATTTGGTGGGCATTGAATGTGG
TATGTCTTTGGTATGCATATTGGAATCAGATGTGATGACCCATATGTTGG
GGAAACTATgaataatttttaaacatgtttaCATAAGTCAGATAAATGAA
ATCTAGTTCAGTTGAATTCATTCTTCAAATGGATTGCCAACATATGTGGC
AGGTATATGTTAAAGATTAAAGGTCAAATTCACCGTGTTATGCAGGGGAA
GAGTAAGACCTTATCCAAAGATATATAGCTATTTCTAGCTCCTAATGTTT
ATCACCTTCATGGTTTTGCTGTATTGTCTTTGGGCTAGCTTACCGAAATG
AGTCAAAAACACCCTTtctcttaggaaaatggtcaaaaatactcacaaaa
tggtcaaaataagaacatgtttaggcttaaaactcaaaaagttaataaca
tccgaaggctttaaaaattttgggtgtgtttataaaaaaagcgtgtagta
tgAAGCTTACcttttaaaatgataaaaagcaCAATCCAGTAAACGATATA
TCTCGATTTTATTAAGATTAATGACAAATCCATAACCAAATTCAATTGAG
CTGGTAAAACTTTTCTTATATTACCGAATCAAATAAGACAAGGATTTCAG
TCCCCTCAATCAAGAAAAATTCCAACAAAATTTTATGTCTTGGTTAACAT
ATGCGGTTCATCTTTAGTCCTTAGACTCTTTTTTATAGTGAATTCCAAGt
tcctttttcaaaacttttcttgAGACTATCTTTCAATTCTATTTGTACTT
CTTCTTAAATTATTTTGTGAAGGTGTTTTATTAGCAGTTTTTCTATTCGT
TATTTGCTAGTCGTCTTTCGCTGGTCGACGCAATAAAAgcttttatttgt
tttgtttctttgagATCTCTTTGGCGAAAGTTTATTTAACAACATATTCT
TATTAACTACCAAAATCAATATAGAAGCTTGATTAGCGGCAAGAGAAAGA
TGATTAGAACAAATATTACAGACTCATATATCCCTTCCTTACACAATCGC
TAACATTAACGTTAAGACCTTTTCTAAATTCCAATAAGATTTTCTCTCCA
TTTTTAACCTTCTACTTTCCGCTATTCCTCGGAGGCCCCCCCCCCTACAA
GGGTTAGAAAATGTCGGGTATTTACGGACCGGGCCTCTCGAAAATGTAAA
TTCTTGcagaatcttttttataagaacatccaaattcttgaagccttcgg
atactcttaactttttgtttcAAGTCAGAAATTGTTCTTAATACACTAAT
TCTCGCCatttttttgagttattttgTCCATtgttctaagaaattgggtg
tttaaagccttaaaatgttcttaacttgttcttggccatcgaagccttat
gttcttatatagtttgttcttatattaaaaacgTGTAGAGAGAGACAAAA
TCAGCGAAACTGACCTTTAGTAAGACTTTTCGACTTTTTGTAGCTTTTAA
AGAGATTTGGGAGACCTtttaaaaaagtgaccctttacgactgcacatac
ccagcacatgcacccttttttataagaatactgtactttggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065024-exon-scaffold_428-1491911889:444362..444517 | TCONS_00065024-exon-scaffold_428-1491911889:444362..444517 | Clytia hemisphaerica | exon |
| TCONS_00065024-exon-scaffold_428-1510915933:444362..444517 | TCONS_00065024-exon-scaffold_428-1510915933:444362..444517 | Clytia hemisphaerica | exon |
| TCONS_00065024-exon-scaffold_428-1575043694:444362..444517 | TCONS_00065024-exon-scaffold_428-1575043694:444362..444517 | Clytia hemisphaerica | exon |
| TCONS_00065024-exon-scaffold_428-1491911889:444947..446703 | TCONS_00065024-exon-scaffold_428-1491911889:444947..446703 | Clytia hemisphaerica | exon |
| TCONS_00065024-exon-scaffold_428-1510915933:444947..446703 | TCONS_00065024-exon-scaffold_428-1510915933:444947..446703 | Clytia hemisphaerica | exon |
| TCONS_00065024-exon-scaffold_428-1575043694:444947..446703 | TCONS_00065024-exon-scaffold_428-1575043694:444947..446703 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:444362..446703 + |
Blast
The following BLAST results are available for this feature:
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