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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065020 ID=TCONS_00065020|Name=TCONS_00065020|organism=Clytia hemisphaerica|type=transcript|length=829bp
ATTGAAATGAGGAAAGTTCTACAGTATGCTTCTCCTTAGAAACTGCTTGG
CACTGGTGGATTTCGGTGGATTTCATCTATGAACCGTTTATTGTTCAACA
AAGCTGGTAAAATGGATTTCAGAAGCCGGTGTTCCTGCGAAAAGTTGTGG
GACGTTATCATGACCACTTGCTGACCTTATAATTGATGCTTGTGATCCTA
ATTCGTCATCGCTCACGTCAGGCGAAAGAATTGTACGGGGAGCTGTAAAC
TCAGGTAAGGGTGGTGGTTCGTATTTTTCGGCTAATTTTGGAGATCTGAA
TTCAGGTAATGATGATGGTCCGATTTGATCTGAGTATCGGTTCGAGTTGT
TAGATGGAAACGTGAATTCGGGTAGCGGTACTGAATCTCTTTCACTTGAA
AGTCGAAAGTTTTTCGAATTTGTTGATCTGGATTTGGTGTTGTGTGATGA
GTGTGATCCACTGGAAGTTAAATTATAAGCACGTCCTTTACCTGCTAAAA
ATCCTCTCCACGCTTCAACTGTGCGCGTCTGTCTCAGAATGTTAAAATAG
AAGATAAAAGCACCTTGTAACGAATTGAATATACAAAATAAGTATTGAAA
AACAAGTCGAGTTTCTCCGACGGCGAGTAACCCGAAAATCCAAGTTAATC
CGAGTAAGGTGCAACAGGAGACGGCAATTCGGAGTTGCGATGCGAGTTGT
GCTTTGTCGTCCACTTTGTGTTTACTgagtttgtttttgaaaagGCGGTA
GACGACAAATAAAAAGATGATGGAGTTCAGGAAGAGGATGATGCCAACGG
GAAGAAGAAGACCATATTTAAGCGAGTTT Run BLAST on NCBI transcript from alignment at scaffold_428:422877..425388+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065020 ID=TCONS_00065020|Name=TCONS_00065020|organism=Clytia hemisphaerica|type=transcript|length=2512bp|location=Sequence derived from alignment at scaffold_428:422877..425388+ (Clytia hemisphaerica)
ATTGAAATGAGGAAAGTTCTACAGTATGCTTCTCCTTAGAAACTGCTTGG
CACTGGTGGATTTCGGTGGATTTCATCTATGGTAAGTCATTGatgctttg
tttttttcattttctaattgaACCTATTACTTCCGGTATAATCTATAAAA
ACTTTTGATATTAAGGCCAACCCAGTGAGTATTCTAAACAATACCATCAA
CAGTCTTTGCATAAACCTTATtctcatcaaaaaaatcttttatcgTAGTA
TATGGCCAACCCTTAAGATCTGTACTATATTTCGTGGGATGCAACTGCAT
GATGTCACCTGACGTAATTAGCATTGCCTGTGACGTCAGTTTTTCACAAT
ATAAACTTTTGCTATGCCCAATTCGCGGGGtccctctcaaaaaagttaac
accctatctactttcgaaccaatcacatgcaGTTGCGTCCCACGAAAGAT
TCTACATATCCTAAGGGTTGGCCCTATAATGCTAACCCCTAATATAGGCT
AAAAATTAACGATTTTTTAAACCTATAAAAAAACGGGCCGGTACAATCGA
TTCCCCGAATAAATTCAACGAAAATGAGTGATACATAGGATAGAGTATTG
AATTCTGAGCAAATAAGGTGTACGACTATACTTCAATATTCTGCCAAATT
TAGTGCGATTAACGTTTTTGTCTAAAACGAAGCATATTTAATAGTGTTTG
GAGCTTTAAATGGTCTACAAATTCTACATAGTCTCTAGCCTTCGGTAATA
CCACTCATGTACCTTTGATTATTTAAGATGTCTAAAAATACTATTCCGAC
CTTTATTAGCCTTTCAAAAGCCCTAAAAGTGTGACAGTCCAAAGTACAAA
ATATTGACACTtacacagatttctgtaaagcccgaagggctagatgtcat
gctttaagctcttccaagcaaaaaaaaagtgaatattggaacaaatattg
ctgctattatTTTCGaaacctgcgaagcttcttattggtcaagcgctgaa
attctattgtaatgccACGTGAtataggtaggatttcctacctaacctcg
acACACTTTCCACTAAAGCACAACATCTagccttcgggctttataaatct
atggacaCCTACCCGTCATTCATCAAACTTAGTACTCCTAACTCACCAGA
AAAGGAAAgtcagaaaaataattttataagaaatacGGTAAATACATTTC
CAAAGGGACTTTTAGTATAGCCTGTTAAACGAAAATGGCTTTTTTATCgc
gaaacaaagaaaaaatttggtatGTGGGAAGGCACTGGCTACTTTAGTCT
TCCGCCGTAAAAATTCTCGAAGCTATTTGATTGTTGAAGTTTGGTAATAG
ACTTTAACCTCGTGAAATATTTCTACACTATACTCAATTTAATGTACATT
AATTATAATATCCTTCCTAATATACTcaactaaagtctatttcaaattag
ctggcagtgttttttcaaatcttaagaacttttgatagaattagatgaat
atttttcacattttagtTGAGGTAAGATTGAAGTTTCCCGTgtaagaagt
tgatttttttctttttcgtttttcttcttcattttcaatatttcatcaaa
ttttttatcaaaccatCATATCCCATTCCCGATAATCTTtccaacgagca
caaaatcgctacttaatccaaattctttcaaaagctattgaggtttgaaa
aaacactgctagctaatttgaaatagacttcaATACGTATCAGTATACTA
TACTCTTCTTACAGAACCGTTTATTGTTCAACAAAGCTGGTAAAATGGAT
TTCAGAAGCCGGTGTTCCTGCGAAAAGTTGTGGGACGTTATCATGACCAC
TTGCTGACCTTATAATTGATGCTTGTGATCCTAATTCGTCATCGCTCACG
TCAGGCGAAAGAATTGTACGGGGAGCTGTAAACTCAGGTAAGGGTGGTGG
TTCGTATTTTTCGGCTAATTTTGGAGATCTGAATTCAGGTAATGATGATG
GTCCGATTTGATCTGAGTATCGGTTCGAGTTGTTAGATGGAAACGTGAAT
TCGGGTAGCGGTACTGAATCTCTTTCACTTGAAAGTCGAAAGTTTTTCGA
ATTTGTTGATCTGGATTTGGTGTTGTGTGATGAGTGTGATCCACTGGAAG
TTAAATTATAAGCACGTCCTTTACCTGCTAAAAATCCTCTCCACGCTTCA
ACTGTGCGCGTCTGTCTCAGAATGTTAAAATAGAAGATAAAAGCACCTTG
TAACGAATTGAATATACAAAATAAGTATTGAAAAACAAGTCGAGTTTCTC
CGACGGCGAGTAACCCGAAAATCCAAGTTAATCCGAGTAAGGTGCAACAG
GAGACGGCAATTCGGAGTTGCGATGCGAGTTGTGCTTTGTCGTCCACTTT
GTGTTTACTgagtttgtttttgaaaagGCGGTAGACGACAAATAAAAAGA
TGATGGAGTTCAGGAAGAGGATGATGCCAACGGGAAGAAGAAGACCATAT
TTAAGCGAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065020-exon-scaffold_428-1491911889:422877..422957 | TCONS_00065020-exon-scaffold_428-1491911889:422877..422957 | Clytia hemisphaerica | exon |
| TCONS_00065020-exon-scaffold_428-1510915933:422877..422957 | TCONS_00065020-exon-scaffold_428-1510915933:422877..422957 | Clytia hemisphaerica | exon |
| TCONS_00065020-exon-scaffold_428-1575043694:422877..422957 | TCONS_00065020-exon-scaffold_428-1575043694:422877..422957 | Clytia hemisphaerica | exon |
| TCONS_00065020-exon-scaffold_428-1491911889:424641..425388 | TCONS_00065020-exon-scaffold_428-1491911889:424641..425388 | Clytia hemisphaerica | exon |
| TCONS_00065020-exon-scaffold_428-1510915933:424641..425388 | TCONS_00065020-exon-scaffold_428-1510915933:424641..425388 | Clytia hemisphaerica | exon |
| TCONS_00065020-exon-scaffold_428-1575043694:424641..425388 | TCONS_00065020-exon-scaffold_428-1575043694:424641..425388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:422877..425388 + |
Blast
The following BLAST results are available for this feature:
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