TCONS_00065007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065007
Unique NameTCONS_00065007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065007 ID=TCONS_00065007|Name=TCONS_00065007|organism=Clytia hemisphaerica|type=transcript|length=4738bp
ctaaaattttggttgctttttgAGAAGTTTTCAGGTCTGTATTTTATCAA
AAGTCGTGCGGCAATGTTCTTTAAAATGGTAGCCGTTTACTGTGGTAGAT
GGAATTCTACTTCAATCTGCGTAGTCAGCAGTCGTCACTGCAGTCCTGGT
CCAGACGTTCCTGTTCGCAAACTAGAAGAATCATTTCCTCCTGTTTTCTT
CGCTTATAACCAAACTATACTGTCATGCCGAAgtaTTTTTGTGATTACTG
TGACACCTACCTAACGCATGACTCACCTTCAGTAAGAAAGACACACAACA
ATGGACGCAAACATAAAGACAATGTCAAATTTTACTACGCTAAATGGATG
GAAGATCAAGCCCAAGCCTTGATTGATCAGACCatcAAGCAAGCAGAGAA
GTCTACCAAGAACTTGCCTCCTGGAATGAATATGCCCCCTGGAATGATGC
CCGGTATGATGCCACCACCCGGTATGCCAGGGATGCCTGGAATGCCGGGT
ATGCCACCAATGCCCTTCGCTGGAATGCCACCTATGCCACCAGGTATGAT
GCCCCCAATGCCTCCAGGCATGCGACCTCCTGGTCCTGGTGGTCCAATGA
ACGGACCTCCCGGCCCCGGTGGGCCACCAGGAGCTTCAAATCCTAATAAA
CGACCAGGAGGACCCATGAGCGGAGGACCCCCCGCACAACGACCTAACGG
CCCAGGAGGACCTGGTGGTCCACCTAATCGACCAAATATGAGGGGTGGAC
CCGGCCCTAATATGAGAGGACCACGGCCAAATATGGGTCCAGGACCTTTA
ATGGGTATCAACGCTCGCCCACCACAGGGTGGCCCACCAAATCGACCACA
CTTCAGAAATTGATTGAGTTCACTTGATAAATAAATACCTATCATATGTA
CATTTTGGATATTTGGGTATCTTGGAGTCTTGGTTGATTTTATATTGAGA
GGTGGACCgaatttaaggaaaatttgaagaaactttGGAGAGATATTTTA
ATGCCTAAGTTTTTTAAtgtgaaatttcaataaaactttGAGAGTTTGGA
TTATGGATGGATTTTGAGTACGCAAAAACTtattgaccaaaaatgaaaca
tttaaaGTCGGAGATGTCATTTAATAACCACATTCAGTTTGGTGCAAATG
GTACTTTTTACCAGCCCGAAtcttttcgaaaagaaaaaatgtaagaatCT
TAGGTCAGGTTAGGTTGGTTTTTAGAATTAGTCTTTGGATGTTAGCTATC
AAAATActgtaattttttatatttttagccTTTCAAAGTGGAGCAGTTCT
GAGCTGAGACTTGCCTTTTTCCttaggttttttttcaaatatggcTTCAg
ggttttgtaaattttaacttttaaccTAAAGAACATTTTATGTACGACAT
TCAAAAGATTAATCGAattaattgtttttaaaaactacCAATGGATTGTT
TCCTTGACTCGAGTGAGACATTGACTTTCAAAATCTTTACTACAAACAGG
GAGCTTAGATATCTCTGATTTTCTTTTTGTGTTTCTTTTTCCAACTCTTA
TCGATTCTATTTACACTAATAAAAATTGGAATATTTCTAATATAATAAAA
TTCTTTCTATGTTAAAAATTACATTTAGGTTAGATGAGCCGAATGAGCGA
GTTTCTTTACAGCTATTTCTATCTagctagaaaaaaaaaatgaagttata
CCATTTCTATTAAAATTTCTTGTAATATTTACAATGTTTCTACTTTTGGC
ATTTAAAGTCTTGCCTCTAGATTTCTTATGCTCAAATGAATGTTCTCTAA
AACTTGAGGCAAGCCAATCATAAACCAAGCAATCTTCCAAGTTTCTAACT
TCTCCTCCCCTTATTTTTACAATGTTTTTACGCAAGACATTTTCACGTTC
TCTTGCGTTCGTTACGGCGTCGGATTTTCGCCACCAGACGTAACCGTCTT
TGTTGACGTAACTTGCGTTTCCATTGTAAGAAAAGACGCTTCCAAAACGG
CGTCTTCCGTACGATAAATGTTCTGTCATCAAATATTAGTTTTTGTGAGT
TTTTGTCCTCAAAACCAAGAATGATGTACTTCTGGTCGAATTTCAATGGC
GGACATAAACATTGCGTTTCTGACCATAAGTGGACTaagccaaatttgaa
aatcttgacTGAACCTAAGAAAGTAAGAAATTAATAGTTTACAAGAGGGT
CCTTCTCAAAGCTTCTTTTTTCAAGGAAAGTGATATGGATTACGGGTTTA
ATTTTTGGTCATGGCTAGTTTTCTATGAACAAGGTGTTGTCAATGTTTGT
TTGGGGTCTTGATTCTACAGAAGATaaaggccgctacccactcagcattt
tatgatCGGCGAATAAGGCGCATAGCTCGGGCGCTTTGGTCGCTGAACGC
TTTTCCCATTCCACTGATTCAAAATAAAGGGGAGATATGctgcacatttt
ttcttttttctattgttgatatctttttgcacacggtacaagagagttaa
atgtctcttctgattggctatttaaaaaagaacaatagggaaGCTGCAAa
gcctagcgaaaaaagttgaaaagtttcaactcttgGTGCGCTCAAGGCGA
CAGCCTTTAAAGGCTTGATTcatgtaatttatgcaataattaagccGCGC
GCCTTGTTCGACGCAATGATTTATTATTgtttaataaaagtttttgatat
ttttgaacgACAAGGGAAAGATGATTTATTACAACCGCATAATCATCCAT
TGGGTTTACTTAAAATCCCATTTGCGATACTTAAAGCACATCAACATTGT
ACAGTTCTCCCACAATATTGTGACCAAATTTTGCTAATTTAGGTGGTTTT
CTAATAATGTTTTTCATAAAGCCTTTATTTGTTTTAAGCGTGTACGTCAT
AGACAATAACTTTGCAAAATTGgagtttgtaaatttgtttttaaagggTC
GGCGGTTACTTTTAACATGCGCCCCTTCCTAATTTTGGTACTGAAATAGG
ATTTAAACCACAAGAAACATCTTAGTATCTACAGTTTCGCCCATGTTGTT
GTTGACGATGTTATCGCCCGTTACAGGGGGTAGTAAAGGCGGGAAGATAT
ACAATGTGCGGAGTTTACTACAGctgttatggcggtatacggaagaAAAT
CAGCGGGAAAGTTCCGAAGAAACTGGCAAACTCTGACTGCTGaaaatttc
ggcaaaaaaacctgtttgcggattttcttcggctttggttttttttctta
catagtgatttgtcttagataATAGCAAAGTCTAACGTTAATGATGCTTG
TAAACCCCGTCTGAGCACTCAAAACCAATCAAAGCCTCGTTAATCACGGC
CGGGAAGAATCAAATTATAAAAGGTTAGGTTGTGTAAGATCAGCAGTAAT
TTTAGATCTTCATAGCAGTCTTACCATGTTTGAAAGCCTTTCGAACAAGG
AAGCTCAATCTCAACCCTCCACTTGCCGTCTTCATCTTTGAAAGTAGTTG
ACCTTCAATCGCTGTAAAACGAGAGTAAACAAAATTTAGTGATTTTCACC
CTTTTTGGGAAGTGGGGTTTCTGTACTTTATAAAAGtctatagaattttt
ttttcttgcgaCTTTTCGAactaaaattgtttattttgggAAATGGTATT
GACAAACAAAGACATTCCATTCACCCCTTCTTGGACTAAGTAAAAGCAGT
CTTTATTAATGAAATTAGCATTATCGGGGCGGGGAATTTTAACAGATGCT
TTTGACTGATTTTTATACTTAGTTCCTAATTAATAGAAGTCGACAACCGA
AAAGAAGCGAAGTTTGACCGGTTGATCTGAACAACTCACTAACCATAATC
AGATTTTCtgaaatctttgaaatcttGTGGTGGTGTGTTCAACTTATTGC
AAAGTGGACAATCTTTCTTCTTGGTGTTTTTCTCTCCTCCCTCTGTTGCA
TGGTTGACATGATCTGGTGCTGAAGAAAATAATGAACATGTTAAATGTTT
CGTCATTAAGCTTTGGTTGATCCTAAGGTAGTTAGACTTAGAATTCTTTT
GTTGGACATGTTTTTGAGGAGTTCCTGAAATGGATATATAGTAGACTCTC
GTTTATTCAAACTTTTATCATCGAATCTTTCTATGATTCGAACTTAAACC
CAGTCCCGATCAAGGAGAACTCTCTTATTATACTTTCTATGATttaaatc
tctctgtaatttgaacaaATGAGATTCCCCAATCAACTGTACAAACTAAA
AGAGGAGGCAAATAGATAAAAAATCCACTCCCATCCAACGCGAAAATTTA
CTAGTAGGATAATGTCCGAACATTTTAATTGTgccaaaaattcacttttt
tgcgGTATTTCATTAAACGATcaatcaaataaatcaatcgAAATGCGGTG
CCTCATTTACTGCCATTAACGTAATCCATATCATTCGATTTCAAAAGTGA
TCACTATATTTATCGTTCATTAGTGGTTTAGAAAATCGCACTTCGGCCTC
TGTATACTAAAGCTTGCTAATGGATACTTAAAGTAGACCACATTTTTTCG
TTattgaagattttgaaatcATGAATGTGCTTATTaaagtaatttttgta
tttttaacgGTTTTCGCTTGTTTTAGCGCCGTATTAAGTGGATCATTATG
AAACTCCTCTAATCGCCAGATCAGCGGGAAGTTAACCACCTTATTTCCCG
aaattttagtcaaaaattAGAGGTGACTGTccattaaa
Run BLAST on NCBI

protein sequence of TCONS_00065007-protein

>TCONS_00065007-protein ID=TCONS_00065007-protein|Name=TCONS_00065007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MPKYFCDYCDTYLTHDSPSVRKTHNNGRKHKDNVKFYYAKWMEDQAQALI
DQTIKQAEKSTKNLPPGMNMPPGMMPGMMPPPGMPGMPGMPGMPPMPFAG
MPPMPPGMMPPMPPGMRPPGPGGPMNGPPGPGGPPGASNPNKRPGGPMSG
GPPAQRPNGPGGPGGPPNRPNMRGGPGPNMRGPRPNMGPGPLMGINARPP
QGGPPNRPHFRN
Run BLAST on NCBI

transcript from alignment at scaffold_428:243342..258097+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065007 ID=TCONS_00065007|Name=TCONS_00065007|organism=Clytia hemisphaerica|type=transcript|length=14756bp|location=Sequence derived from alignment at scaffold_428:243342..258097+ (Clytia hemisphaerica)
ctaaaattttggttgctttttgAGAAGTTTTCAGGTCTGTATTTTATCAA
AAGTCGTGCGGCAATGTTCTTTAAAATGGTAGCCGTTTACTGTGGTAGAT
GGAATTCTACTTCAATCTGCGTAGTCAGCAGTCGTCACTGCAGTCCTGGT
CCAGACGTTCCTGTTCGCAAACTAGAAGAATCATTTCCTCCTGTTTTCTT
CGCTTATAACCAAACTATACTGTCATGCCGAAGTAAGTACAACTTTGAGG
ATTTGATctcatttttctttcagtttgttcAAGTTTTTCTTCACTTCTCA
CAAGGGAAACCTTTTTTTGACTGGTTCCACCAAAACAAATGGAAAGAACT
CTTGTATATTGCTCATTCCGATACGACTTCTTTTTTCTGCCGATCTTCTC
TGAGGCTTTTTTCTGACCCCCCTGGTGACTTTTCTAACTTATTTACTACC
TTATTGcatattggaactaattttcgtgggaactaataattttcgcggtc
gaaaaaaaaaaatccaaaaaattgcCAGACGAtctctcaatcgaacggaa
tcgacgatctaACAGCCGAACCAaaccgaacgcaatcgaccgattgaaat
tcgattgtcgaacgcgatcgaatctcaatcgaatattaccgcaattttca
gattcgattgagattcgattgcgttcgattgatgttcgattgcgttcgat
taggatccgacccttagagagactaatctTTGTTAAAAAGCTGACCCTTT
TCGAAATCCTCTAGTTGAtttgattcttttgagctatatatgagagTTAA
GGAATATAGTCAACTCAGGTAATCGTTAAACGCACTTTTCAGAGAAAGGT
TGATTTTGCGGCTAATTCTTGCGATTAAAGGCTAGTTGAGCTCTTTTTAG
ATAGCTTAAGCATTTTCCAACCTTTTTCATTCATATAAGCTATCTTCGAT
AAGCCAAAATTCATTAAACAACATTTTTTAACTGCGTAATGATTAGGTGC
CAAATCTGCAATTATTCCGCATTTTTCCCTATCGATTCCGCGCATGCTAA
TTCTTGCGATTAAAGGCTAGTTGCCCGCTAGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTCTATCGATTCCGTGGAT
CGGAAAACTGTTAAGAAAACCAATTGGCTATTAAActgtgttgaaaagat
attacttGAAACAATGTATTGGCGACTTTAAAGTTTGAATGGTAACTTGA
AAAGGTGCGTAATGATTGGGCAACCCTGGTAAATTTTACGCACCTAATTG
ATCCGCGGCTCTTGTTATTTATCACGGAATATTCAAGAAAAAACACTTGG
TGGGATAAAACGTACTTGAATAGGCTGCTTCTTAGCAACAACCATTTGCG
CGCTATCTTGTACCCAGATCTCCTCAGTTCAAAAGTTACTTCGTCcttct
aaaatatcaaaatggtaTCGCTACAGCGCATTTTCTTTGAGGCAAATTTT
GGAGAGCGGGAAGTCAAAACAGAAACAAATTATTGGTACAAAAGGTAGGG
AAatgttttggctttcataatAATTTTACTTCAAGGTTAGAAACCAAGTA
TATNGCCCGCTAGTTGAGCTCTTTTAAGATAGCTAAAGCATTTTCCAACC
TTATTCCTTCATATAAGCTATCTTCGATAAGCCAAAATTCATTATTaagc
aacatttttcaactgcgTAATGATTAGGTGCCAAATCTGCAATTATTCCN
CGATTACCTGAGTTGACTATAattggaagcggtgcgcgtcacgcaaaata
tatttgggacatgccttgtttcacccgaacAATCAAATGCAGTCGAacga
caatcgaaccagtcgaacaacaattgAACctatcaaatattacccagaat
tttgacgttcgattgagattcgattgctttggacaatcaaatttcaatcg
gtcgaaaTGCATTCGATTTCGTTCGACTGGTTAGATcgtcgatttcgttc
gattgagtttttttccattctggaattttcccgggttttaattttcgcgg
tattGCCCTTTTATGGACAAATTTCGGAAAacattgtatttcgcgggaat
taattttcgcggttttcaactctcaaatTTTTTAGCGGGACCAAAtattc
gcgattttgacgaaaaacgctaaaattaaaacccgcgaaaattagttcca
acaAGGTATGTTTTCTGACTAAGCAGTCAcagaaatagaccttttttcaa
agaggccaccctgttgaataattatgtagtccagcagaaaaacaatgata
aaaccatgtataattattacaatatgcatgatacagtaattatgcatggt
tttatcattgtttttctgctggacaacataattattcaacagggtggcct
ctttgaaaaaaggtctatccttgcatttgcacaggGTTCTACATGCGGCA
AATGCAAcaggtcgaaaacgaaagtgacgaaaaaaccCCGTGCAAATACA
CCTGATCACTGCGACTCATTACATTTACACAGAGTGGAAAACTGTTACAC
TTGATTATAAATAAATGCagcacagatcaaaattttaacctgtggacaaa
aattttctaagaaggctaaagaatcttctaaagagaaaatgaaaattgcc
aTTCGTCATCGTTTTAtgccattttcattttaaacttgagatttgttaat
tttcgcgcattttGCCTTACacgttctagctcatttgcacagggttggaa
aaaatctttgaaaccgttgcaaatgcacaccCAGTGCCAGTGCAAGGATT
TCTGTGACTGCTAGGCCAGGCcaaattgattgtttggttcgtgtcctaga
agctttgaaaaatgggtcggtggtagctaaaattggaacttttttttaat
ttcctaccaaaaacctcaatttttaaaattcctCAAGCGATCGTGCAATC
CTGGAATCCAAACGCAAATGTAAAGAAATAGCCTAAAGCCTGGATCCACA
AAGGCACGCGCCACAATCACAAGATAACTTCTAGTTGGAGATTAAGGTGT
TTGTGACGTGTGTTTAAAAGAATACGGCTGCCAGTCTCTGCTTTTAGGTG
CGtagtatttgtttttaagtacgGGTTACACCGGGACATTTTCTGTGCAC
GAAGTGGATGTTGTTTATAGAAGAATCAAAGCAGTCAGTTAAAAAAGAAC
CGCAGAGATAGTAGTTATCATGTGAAAAGgaggtaaattttttttgatat
ttcgactcaaagtgaaacactttttctaaaaaaattagagtcggtcggag
gacacgaaccaaactatcaattgggcctggccctATTTTAAAGTGTCTTA
ACTTaccttgaaatatcgacccgaccggggttcgaacccaccaaatgaaa
gcgtttctgatcagaaacccagcgcgctatctgttgagccacactcgcac
agcagaacacaaaatttggaaatgcttatagaatgacaaaaaaggcgggg
gtaatgttattataatatgggtaaaaattgccccttttttaacctaaCTG
AAATTTGAGCCATTACTAACAACCCTGCAGGCCCAAGGCGctgagtatgc
acccggcacaatGACAAGctgttactagcaaccctgacctaagcaattcc
aaacaacaaaacccctggaaaatttaaaatgtcggaatgagcaatataTA
GAGTTTTTTCCAAAACAGACAGTCCATTAACAATCCTTGATATCGATATT
ACAAAATTTGTGCATTTTTTCCCCAAACAATCGttttaaaggggaattaa
cgtttcaaaattgtcaacaaataaattacagattcaaatagagctcattg
agacaatttcaaatatatatggttTATAGGGCTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTTGG
AGCAcatgtgacgtcacaaaatcaACAGAGGGGGAGTTTTTCTCCATTGT
AGAGTCAAAATTGTGAGAAATTAAAGATTGAATAACTCAATGAATAAAGG
ACATTATGAAGTGGTTAATTCcaaacgttaattcccctttaaacgtcact
tccacaataatttgtGTTATTACACTTTCGGTCAGTCGGTTTCATCATGA
TGGGTGTTTCTTCTATATGCTTTTTTATGGTTGAGTCTCAGAGAGAAGGC
TTTTAAGGCTCATTTTcacaactatagacgctttcaattagcgctctgtc
agcaccttgaactggttcattcacttgccgcAAGTAAATCGCTGCAAGTG
GGAATCAAACCTCAGTCACCTGTAGCTGtgtagcaaccaaggtcaatgac
cactataccaccaCAGCGCCTATATCACATACGTGTGTCTTTAGTAGTCA
CGTGACCTATAAAGGTAGCCATCggaaaattgttctgttcaCGTTGCAGC
GGTTGTTAAAAATACATGAGGCAGGGCTGAGGGCGGACAGAAAGATTTAA
GGGTTTTCAAAAATCGCGTCAGAAAGCCAATTTCTTCTTCTGATGGAGGG
AGCTATAGCTATCTGTTATATGTTCTTGCAAAGTACAGCTAAAATAACGC
TGTTCTCCCCTTATAGTGCAGTCTAAATGTGCCAAAAGTCATAAACATTG
TGCAGAAGGgcgtaaaagcatgaaactttgcacaatggtagtttagggat
caaaaatggatttaaatctcagacccaaaaatttggcacctgtttgtgta
ttttacagaccagaataggtttccaggctaaaatgaaaatctttttctcc
aaagtatgtcatgttacataccgttggaaagcatgTTTCATGCCCgttca
gaaaaacattacaacccatatctgaaaatgaagccaataaaagttattgg
ggaaggttgtttaaaaaatgaccgaaaatgacgtaattgatgatgtcagc
aaaaattcCAGGACCACCCAAAtgtgtttatttttgtgaaattcaataga
GTACCTCTTAGGTACTAAATACTATTGGTTAGATCAGCTGCAAGCTTATT
TTACAATAGTGTTTTTAGTATTGTTAGGTTGACAAATTTTGCCTTAGTAA
TGCTCTACCATGGGCATGCCCGGTGCAAACCCTTTAGCCTAAGGCTTTCG
ACCNTTCAATATAATTTATGtgttatttgttttgtttatgtgtTTGTTTG
TTCTGCAGAGAAGAgcttaaatgaaaaaagctATACGTTAAAAGCacaaa
tttttttcccgcttctCTGCATCGAaaaatcagcagaaaatatgatgcgg
gcAGGTGATGCGAACAGAACAATCGATGGCCGCCTAaatgcctactaaaa
caatccagGGGTAAGTGTTGAAGTAATACAGATTATTCTTAAAGTAAAGA
AGTATCTTTttgcattgacaatcaaatataatatactagccggtacccgg
cgtcgcacgccggttaagctgtagctgaacgcactataagtcctttggat
gttgaagctggcttaaaaaaaaacgatcaaattaataaaaagatatcttc
aaagtttgactctaaccttcccccggagatctttttcttgcttcGCTCGT
attaaatacgccgtccagttttcgacaatttgagaaaatttcatggtaaa
gaggagtgaaatgtagaaatgaccattctttaggaaaaagcaggaaagcc
acaaagaatagtgcaactttttttttatcagatttaaaaagataaataat
aagtcaattctaaattgcttttttaaacccttgtcataacttttcgaatt
caaacatgtaaaatgacgtacacagtttttaacagtatcaaccacttgaa
tggttttatatctttatatgaagaaataagagatggactaatttcttctt
ttgctttttatcgccctttgaatgctgttattgttcgataaactttttaa
atttatgttttgatttacatttgaaatgttcttttctataaaagaaactt
gttttgttttgacaagaattcgaatgtcattaataaatacgatcgtNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATC
AGGCaaagctgggcagaaattaaaattactaaatgtagatgggccttaaa
tttcaaaacaaaggctgaataaagtctaaaccagattctttccgatctgt
caatcaaaacaaacttatcgagaacaaaacattgcttgcgaaatcttttg
caagagactaaaagtcataattctaaaacacaaacaaagcgaaaacgaaa
gtggtgacacacagacacacacaaagcaccgctattaatatatagattat
aaTATGCTACTGTAATATTAttttcttaattcaaaaatagaaaaattaat
tttgcatttgcaaACTCCTGTTCttatggtgacgtcacctaagaataaaa
aagaaaggattttgtcagttttatgcatatatcaATTTGCAAGATATTCT
TTTGGCCGCGTGAGTGCACTTTTCGTAGAATAGTCGGAATACCTCTTTTT
CTCGCTTTTTACTCGTAATTTTGTGTAACTTATGGCATGTTCAAAAAGGA
CATAAGTTTGGCACAGAAAATTGGGGGTCTTagttttttaataataataa
ataaatcacTAAtcataagcatacatcaatgttcttgaTAAATCCAATCA
TAAGGCTATCCGCTCTGCAAGCGGGGCTAGACCGTCAGTAGTGCTAAAAA
TAGTCTGAGTTGTAGTCCGAGTAAACGATTCTCAAGCATCTTTTATGTAG
ATTGTTTATTTTATCCTCTAGAGCCCTGCTATGAAACATCCATATGAGAG
GACAGTAATTGAAGTGGCATTTAATGAAAGCATTCATTAagcgtttcttt
ttttctaaattgagATATGTGCTCATTTTGGCTAAGGCGGTTATTTTCAA
AGTAGCTTTCTTgcaaagattttatttatgcGATTCAAGTCAAGGGATTA
TTGAAGGTTACTCCAAGAATCTTTAAGGTTTTCGTATTGAAAACAGTTAG
GGGGTGTTACAAGAAGTgtgttcaaaatttaaaatataggGGCTTACCAA
CGGGATGCTTGCCCATAATAACAGGGAGAAAAATTcgcattttggaaaaa
atgaatgaaaagaaGATTCTTTCCATAAGGGGAGAATGTTCTTTTGTTGA
GTATAttgcaaatgaaaaatttaatgttATTTAGATATCAGCATCGCACA
TATAACACACGTGTAAGTCAATATAGAATGGTATGGCAAACAAAGAAGTC
TTCAAATAAGTACAACAGCAAGccaaatacattttttattattactgttt
cctacatgttttttatagtaagtaagtaagtctgcgaccgcagtcggagg
cgacccgaaggctcctctttcgatagctatctacccgaaggtaggggcgg
gcgccactctttctccctggatttctccacttacccttgatccttctctt
agttgctgagcatcaagcagagaggcatcaagtaccattNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
taccattttgggaatctttggtatgacccggctgggggttgaacccacaa
ccttgcgaaccgtagccggatgctctaccactgtactacggtcgctttTT
AcggtgttttttataagcaagtgtcttcAGGcttgcattatgcttagcat
tctattgttcttaaacaatagagccattgtttaggtaccaaaaagaGAGC
CTGTATATGctcataaaaaaacttgtatttaTGATTAATTTTTCACTGTT
AACTCTCCCTAACAAGAGAAAGTTCTTCCTAACATGGAATGAGGtgtttg
aaagaaccaactaaAAGTTGGCTAATAGGAGGTAAGAAAAAAAGATCTGA
ATAGCAGAATTTCCAAAGTTAGTGATGATCTCCCAGGTTTTGGCAGTAGT
TGGTTAGATTTTTACCTATTCTAATAACATGAAAGGCTTATAGTTAGAGC
atttcttgttttattttctcGAATTTAACCACCACTAGGTGGTATCCACT
GAGTTTCGTCatttatgtttttttcatttttaggtaTTTTTGTGATTACT
GTGACACCTACCTAACGCATGACTCAGTAAGTTGTTTtgtattattttga
aaattggtttGTAAATAAGCCTTTTCATGAACTTGACTGAACTTAACTTG
ACTGATTCGAAAGGATTCGTTGCCTGAGAAAATTTCTTTATTAAATAATT
GAAGATTGTATGATCTGCAAATTTGGATAATTTGCTGTGCCATTATAAtt
tatattattattaaagGGTAGTACCTAAAAAGCATTCTATTTCTTCAGAA
CTAAACCATAAATTGAATTTTGCTTTTCCCCACAGCCTTCAGTAAGAAAG
ACACACAACAATGGACGCAAACATAAAGACAATGTCAAATTTTACTACGC
TAAATGGATGGAAGATCAAGCCCAAGCCTTGATTGATCAGACCagtatgt
tttgtttttgttgcaccAGAATTTATTTAGTCTTTAtctatttcactttt
ttttgaggTTTCAAACACCAAATACTGaaattgatgtaatctttttCCAA
CTGCATCCACGTTCGTTACTACTGATTTCTCTCTAAGCAACAATTTAGGA
GAATTTCAACTTTGGACTACTAAGTTGTGTAAAAGATTGACTAGGTTTCA
AgtgttttaccatttttttgccTTTTAATAAAATACtgttaaatttattt
attttcaattttttagtcAAGCAAGCAGAGAAGTCTACCAAGAACTTGCC
TCCTGGAATGAATATGCCCCCTGGAATGATGCCCGGTATGATGCCACCAC
CCGGTATGCCAGGGATGCCTGGAATGCCGGGTATGCCACCAATGCCCTTC
GCTGGAATGCCACCTATGCCACCAGGTTTGTTTTATTATAATGATGTCTT
TTCAATCTTTCAATGGCTATTCATTGCTTGTAATGgtgtttattttcatt
gctgcctttttttatttgtaatgGTTTTTGAAATGTCTTCACTTGATCTC
TTACTCACTATTATTTCCCTCACTAGCGTATCAAGTTTCACAATTCTGCC
TGTTCTTTTCCTCCTACTACTTCATCACTTTCATCGTTCTTACTTTCAAG
TTCAGTCTCTTGCCCAGATCTTATTTCCGTCTATGAAATCTCACTTGTGA
TAAACAAAGTACATAACTCTGCATAACTTCCTATAAATCATCAATCATCA
CTTATTAAAACCTTAATCATCCACATCCATAACCACTCTTTTTTATTCCA
TCTTTTTCAAGGTATGATGCCCCCAATGCCTCCAGGCATGCGACCTCCTG
GTCCTGGTGGTCCAATGAACGGACCTCCCGGCCCCGGTGGGCCACCAGGA
GCTTCAAATCCTAATAAACGACCAGGAGGACCCATGAGCGGAGGACCCCC
CGCACAACGACCTAACGGCCCAGGAGGACCTGGTGGTCCACCTAATCGAC
CAAATATGAGGGGTGGACCCGGCCCTAATATGAGAGGACCACGGCCAAAT
ATGGGTCCAGGACCTTTAATGGGTATCAACGCTCGCCCACCACAGGGTGG
CCCACCAAATCGACCACACTTCAGAAATTGATTGAGTTCACTTGATAAAT
AAATACCTATCATATGTACATTTTGGATATTTGGGTATCTTGGAGTCTTG
GTTGATTTTATATTGAGAGGTGGACCgaatttaaggaaaatttgaagaaa
ctttGGAGAGATATTTTAATGCCTAAGTTTTTTAAtgtgaaatttcaata
aaactttGAGAGTTTGGATTATGGATGGATTTTGAGTACGCAAAAACTta
ttgaccaaaaatgaaacatttaaaGTCGGAGATGTCATTTAATAACCACA
TTCAGTTTGGTGCAAATGGTACTTTTTACCAGCCCGAAtcttttcgaaaa
gaaaaaatgtaagaatCTTAGGTCAGGTTAGGTTGGTTTTTAGAATTAGT
CTTTGGATGTTAGCTATCAAAATActgtaattttttatatttttagccTT
TCAAAGTGGAGCAGTTCTGAGCTGAGACTTGCCTTTTTCCttaggttttt
tttcaaatatggcTTCAgggttttgtaaattttaacttttaaccTAAAGA
ACATTTTATGTACGACATTCAAAAGATTAATCGAattaattgtttttaaa
aactacCAATGGATTGTTTCCTTGACTCGAGTGAGACATTGACTTTCAAA
ATCTTTACTACAAACAGGGAGCTTAGATATCTCTGATTTTCTTTTTGTGT
TTCTTTTTCCAACTCTTATCGATTCTATTTACACTAATAAAAATTGGAAT
ATTTCTAATATAATAAAATTCTTTCTATGTTAAAAATTACATTTAGGTTA
GATGAGCCGAATGAGCGAGTTTCTTTACAGCTATTTCTATCTagctagaa
aaaaaaaatgaagttataCCATTTCTATTAAAATTTCTTGTAATATTTAC
AATGTTTCTACTTTTGGCATTTAAAGTCTTGCCTCTAGATTTCTTATGCT
CAAATGAATGTTCTCTAAAACTTGAGGCAAGCCAATCATAAACCAAGCAA
TCTTCCAAGTTTCTAACTTCTCCTCCCCTTATTTTTACAATGTTTTTACG
CAAGACATTTTCACGTTCTCTTGCGTTCGTTACGGCGTCGGATTTTCGCC
ACCAGACGTAACCGTCTTTGTTGACGTAACTTGCGTTTCCATTGTAAGAA
AAGACGCTTCCAAAACGGCGTCTTCCGTACGATAAATGTTCTGTCATCAA
ATATTAGTTTTTGTGAGTTTTTGTCCTCAAAACCAAGAATGATGTACTTC
TGGTCGAATTTCAATGGCGGACATAAACATTGCGTTTCTGACCATAAGTG
GACTaagccaaatttgaaaatcttgacTGAACCTAAGAAAGTAAGAAATT
AATAGTTTACAAGAGGGTCCTTCTCAAAGCTTCTTTTTTCAAGGAAAGTG
ATATGGATTACGGGTTTAATTTTTGGTCATGGCTAGTTTTCTATGAACAA
GGTGTTGTCAATGTTTGTTTGGGGTCTTGATTCTACAGAAGATaaaggcc
gctacccactcagcattttatgatCGGCGAATAAGGCGCATAGCTCGGGC
GCTTTGGTCGCTGAACGCTTTTCCCATTCCACTGATTCAAAATAAAGGGG
AGATATGctgcacattttttcttttttctattgttgatatctttttgcac
acggtacaagagagttaaatgtctcttctgattggctatttaaaaaagaa
caatagggaaGCTGCAAagcctagcgaaaaaagttgaaaagtttcaactc
ttgGTGCGCTCAAGGCGACAGCCTTTAAAGGCTTGATTcatgtaatttat
gcaataattaagccGCGCGCCTTGTTCGACGCAATGATTTATTATTgttt
aataaaagtttttgatatttttgaacgACAAGGGAAAGATGATTTATTAC
AACCGCATAATCATCCATTGGGTTTACTTAAAATCCCATTTGCGATACTT
AAAGCACATCAACATTGTACAGTTCTCCCACAATATTGTGACCAAATTTT
GCTAATTTAGGTGGTTTTCTAATAATGTTTTTCATAAAGCCTTTATTTGT
TTTAAGCGTGTACGTCATAGACAATAACTTTGCAAAATTGgagtttgtaa
atttgtttttaaagggTCGGCGGTTACTTTTAACATGCGCCCCTTCCTAA
TTTTGGTACTGAAATAGGATTTAAACCACAAGAAACATCTTAGTATCTAC
AGTTTCGCCCATGTTGTTGTTGACGATGTTATCGCCCGTTACAGGGGGTA
GTAAAGGCGGGAAGATATACAATGTGCGGAGTTTACTACAGctgttatgg
cggtatacggaagaAAATCAGCGGGAAAGTTCCGAAGAAACTGGCAAACT
CTGACTGCTGaaaatttcggcaaaaaaacctgtttgcggattttcttcgg
ctttggttttttttcttacatagtgatttgtcttagataATAGCAAAGTC
TAACGTTAATGATGCTTGTAAACCCCGTCTGAGCACTCAAAACCAATCAA
AGCCTCGTTAATCACGGCCGGGAAGAATCAAATTATAAAAGGTTAGGTTG
TGTAAGATCAGCAGTAATTTTAGATCTTCATAGCAGTCTTACCATGTTTG
AAAGCCTTTCGAACAAGGAAGCTCAATCTCAACCCTCCACTTGCCGTCTT
CATCTTTGAAAGTAGTTGACCTTCAATCGCTGTAAAACGAGAGTAAACAA
AATTTAGTGATTTTCACCCTTTTTGGGAAGTGGGGTTTCTGTACTTTATA
AAAGtctatagaatttttttttcttgcgaCTTTTCGAactaaaattgttt
attttgggAAATGGTATTGACAAACAAAGACATTCCATTCACCCCTTCTT
GGACTAAGTAAAAGCAGTCTTTATTAATGAAATTAGCATTATCGGGGCGG
GGAATTTTAACAGATGCTTTTGACTGATTTTTATACTTAGTTCCTAATTA
ATAGAAGTCGACAACCGAAAAGAAGCGAAGTTTGACCGGTTGATCTGAAC
AACTCACTAACCATAATCAGATTTTCtgaaatctttgaaatcttGTGGTG
GTGTGTTCAACTTATTGCAAAGTGGACAATCTTTCTTCTTGGTGTTTTTC
TCTCCTCCCTCTGTTGCATGGTTGACATGATCTGGTGCTGAAGAAAATAA
TGAACATGTTAAATGTTTCGTCATTAAGCTTTGGTTGATCCTAAGGTAGT
TAGACTTAGAATTCTTTTGTTGGACATGTTTTTGAGGAGTTCCTGAAATG
GATATATAGTAGACTCTCGTTTATTCAAACTTTTATCATCGAATCTTTCT
ATGATTCGAACTTAAACCCAGTCCCGATCAAGGAGAACTCTCTTATTATA
CTTTCTATGATttaaatctctctgtaatttgaacaaATGAGATTCCCCAA
TCAACTGTACAAACTAAAAGAGGAGGCAAATAGATAAAAAATCCACTCCC
ATCCAACGCGAAAATTTACTAGTAGGATAATGTCCGAACATTTTAATTGT
gccaaaaattcacttttttgcgGTATTTCATTAAACGATcaatcaaataa
atcaatcgAAATGCGGTGCCTCATTTACTGCCATTAACGTAATCCATATC
ATTCGATTTCAAAAGTGATCACTATATTTATCGTTCATTAGTGGTTTAGA
AAATCGCACTTCGGCCTCTGTATACTAAAGCTTGCTAATGGATACTTAAA
GTAGACCACATTTTTTCGTTattgaagattttgaaatcATGAATGTGCTT
ATTaaagtaatttttgtatttttaacgGTTTTCGCTTGTTTTAGCGCCGT
ATTAAGTGGATCATTATGAAACTCCTCTAATCGCCAGATCAGCGGGAAGT
TAACCACCTTATTTCCCGaaattttagtcaaaaattAGAGGTGACTGTcc
attaaa

Coding sequence (CDS) from alignment at scaffold_428:243342..258097+

>TCONS_00065007 ID=TCONS_00065007|Name=TCONS_00065007|organism=Clytia hemisphaerica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_428:243342..258097+ (Clytia hemisphaerica)
ATGCCGAAgtaTTTTTGTGATTACTGTGACACCTACCTAACGCATGACTC
ACCTTCAGTAAGAAAGACACACAACAATGGACGCAAACATAAAGACAATG
TCAAATTTTACTACGCTAAATGGATGGAAGATCAAGCCCAAGCCTTGATT
GATCAGACCatcAAGCAAGCAGAGAAGTCTACCAAGAACTTGCCTCCTGG
AATGAATATGCCCCCTGGAATGATGCCCGGTATGATGCCACCACCCGGTA
TGCCAGGGATGCCTGGAATGCCGGGTATGCCACCAATGCCCTTCGCTGGA
ATGCCACCTATGCCACCAGGTATGATGCCCCCAATGCCTCCAGGCATGCG
ACCTCCTGGTCCTGGTGGTCCAATGAACGGACCTCCCGGCCCCGGTGGGC
CACCAGGAGCTTCAAATCCTAATAAACGACCAGGAGGACCCATGAGCGGA
GGACCCCCCGCACAACGACCTAACGGCCCAGGAGGACCTGGTGGTCCACC
TAATCGACCAAATATGAGGGGTGGACCCGGCCCTAATATGAGAGGACCAC
GGCCAAATATGGGTCCAGGACCTTTAATGGGTATCAACGCTCGCCCACCA
CAGGGTGGCCCACCAAATCGACCACACTTCAGAAATTGAATGCCGAAgta
TTTTTGTGATTACTGTGACACCTACCTAACGCATGACTCACCTTCAGTAA
GAAAGACACACAACAATGGACGCAAACATAAAGACAATGTCAAATTTTAC
TACGCTAAATGGATGGAAGATCAAGCCCAAGCCTTGATTGATCAGACCat
cAAGCAAGCAGAGAAGTCTACCAAGAACTTGCCTCCTGGAATGAATATGC
CCCCTGGAATGATGCCCGGTATGATGCCACCACCCGGTATGCCAGGGATG
CCTGGAATGCCGGGTATGCCACCAATGCCCTTCGCTGGAATGCCACCTAT
GCCACCAGGTATGATGCCCCCAATGCCTCCAGGCATGCGACCTCCTGGTC
CTGGTGGTCCAATGAACGGACCTCCCGGCCCCGGTGGGCCACCAGGAGCT
TCAAATCCTAATAAACGACCAGGAGGACCCATGAGCGGAGGACCCCCCGC
ACAACGACCTAACGGCCCAGGAGGACCTGGTGGTCCACCTAATCGACCAA
ATATGAGGGGTGGACCCGGCCCTAATATGAGAGGACCACGGCCAAATATG
GGTCCAGGACCTTTAATGGGTATCAACGCTCGCCCACCACAGGGTGGCCC
ACCAAATCGACCACACTTCAGAAATTGAATGCCGAAgtaTTTTTGTGATT
ACTGTGACACCTACCTAACGCATGACTCACCTTCAGTAAGAAAGACACAC
AACAATGGACGCAAACATAAAGACAATGTCAAATTTTACTACGCTAAATG
GATGGAAGATCAAGCCCAAGCCTTGATTGATCAGACCatcAAGCAAGCAG
AGAAGTCTACCAAGAACTTGCCTCCTGGAATGAATATGCCCCCTGGAATG
ATGCCCGGTATGATGCCACCACCCGGTATGCCAGGGATGCCTGGAATGCC
GGGTATGCCACCAATGCCCTTCGCTGGAATGCCACCTATGCCACCAGGTA
TGATGCCCCCAATGCCTCCAGGCATGCGACCTCCTGGTCCTGGTGGTCCA
ATGAACGGACCTCCCGGCCCCGGTGGGCCACCAGGAGCTTCAAATCCTAA
TAAACGACCAGGAGGACCCATGAGCGGAGGACCCCCCGCACAACGACCTA
ACGGCCCAGGAGGACCTGGTGGTCCACCTAATCGACCAAATATGAGGGGT
GGACCCGGCCCTAATATGAGAGGACCACGGCCAAATATGGGTCCAGGACC
TTTAATGGGTATCAACGCTCGCCCACCACAGGGTGGCCCACCAAATCGAC
CACACTTCAGAAATTGAATGCCGAAgtaTTTTTGTGATTACTGTGACACC
TACCTAACGCATGACTCACCTTCAGTAAGAAAGACACACAACAATGGACG
CAAACATAAAGACAATGTCAAATTTTACTACGCTAAATGGATGGAAGATC
AAGCCCAAGCCTTGATTGATCAGACCatcAAGCAAGCAGAGAAGTCTACC
AAGAACTTGCCTCCTGGAATGAATATGCCCCCTGGAATGATGCCCGGTAT
GATGCCACCACCCGGTATGCCAGGGATGCCTGGAATGCCGGGTATGCCAC
CAATGCCCTTCGCTGGAATGCCACCTATGCCACCAGGTATGATGCCCCCA
ATGCCTCCAGGCATGCGACCTCCTGGTCCTGGTGGTCCAATGAACGGACC
TCCCGGCCCCGGTGGGCCACCAGGAGCTTCAAATCCTAATAAACGACCAG
GAGGACCCATGAGCGGAGGACCCCCCGCACAACGACCTAACGGCCCAGGA
GGACCTGGTGGTCCACCTAATCGACCAAATATGAGGGGTGGACCCGGCCC
TAATATGAGAGGACCACGGCCAAATATGGGTCCAGGACCTTTAATGGGTA
TCAACGCTCGCCCACCACAGGGTGGCCCACCAAATCGACCACACTTCAGA
AATTGAATGCCGAAgtaTTTTTGTGATTACTGTGACACCTACCTAACGCA
TGACTCACCTTCAGTAAGAAAGACACACAACAATGGACGCAAACATAAAG
ACAATGTCAAATTTTACTACGCTAAATGGATGGAAGATCAAGCCCAAGCC
TTGATTGATCAGACCatcAAGCAAGCAGAGAAGTCTACCAAGAACTTGCC
TCCTGGAATGAATATGCCCCCTGGAATGATGCCCGGTATGATGCCACCAC
CCGGTATGCCAGGGATGCCTGGAATGCCGGGTATGCCACCAATGCCCTTC
GCTGGAATGCCACCTATGCCACCAGGTATGATGCCCCCAATGCCTCCAGG
CATGCGACCTCCTGGTCCTGGTGGTCCAATGAACGGACCTCCCGGCCCCG
GTGGGCCACCAGGAGCTTCAAATCCTAATAAACGACCAGGAGGACCCATG
AGCGGAGGACCCCCCGCACAACGACCTAACGGCCCAGGAGGACCTGGTGG
TCCACCTAATCGACCAAATATGAGGGGTGGACCCGGCCCTAATATGAGAG
GACCACGGCCAAATATGGGTCCAGGACCTTTAATGGGTATCAACGCTCGC
CCACCACAGGGTGGCCCACCAAATCGACCACACTTCAGAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040757XLOC_040757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065007-exon-scaffold_428-1491911889:243342..243573TCONS_00065007-exon-scaffold_428-1491911889:243342..243573Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1510915933:243342..243573TCONS_00065007-exon-scaffold_428-1510915933:243342..243573Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1575043694:243342..243573TCONS_00065007-exon-scaffold_428-1575043694:243342..243573Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1491911889:252675..252717TCONS_00065007-exon-scaffold_428-1491911889:252675..252717Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1510915933:252675..252717TCONS_00065007-exon-scaffold_428-1510915933:252675..252717Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1575043694:252675..252717TCONS_00065007-exon-scaffold_428-1575043694:252675..252717Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1491911889:252977..253085TCONS_00065007-exon-scaffold_428-1491911889:252977..253085Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1510915933:252977..253085TCONS_00065007-exon-scaffold_428-1510915933:252977..253085Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1575043694:252977..253085TCONS_00065007-exon-scaffold_428-1575043694:252977..253085Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1491911889:253358..253516TCONS_00065007-exon-scaffold_428-1491911889:253358..253516Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1510915933:253358..253516TCONS_00065007-exon-scaffold_428-1510915933:253358..253516Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1575043694:253358..253516TCONS_00065007-exon-scaffold_428-1575043694:253358..253516Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1491911889:253903..258097TCONS_00065007-exon-scaffold_428-1491911889:253903..258097Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1510915933:253903..258097TCONS_00065007-exon-scaffold_428-1510915933:253903..258097Clytia hemisphaericaexon
TCONS_00065007-exon-scaffold_428-1575043694:253903..258097TCONS_00065007-exon-scaffold_428-1575043694:253903..258097Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065007-proteinTCONS_00065007-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:243342..258097 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.865	15.1781	112.934	137.605	87.0883	65.9051	43.2454	46.6898	35.844	43.1965	39.761	43.0613	32.4948	38.0473	32.4087	33.4287	30.2731	28.2442	14.7675	15.0112	27.9399	27.5183	30.0168	30.5313	31.6397	35.8491	19.5755	19.224	19.0932	20.1527
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR017340U1_snRNP-C
IPR013085U1-CZ_Znf_C2H2
IPR000690Matrin/U1-C_Znf_C2H2
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005634 nucleus
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00065007 vs. Swiss-Prot (Human)
Match: RU1C (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.803e-23
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:  225 MPKYFCDYCDTYLTHDSPSVRKTHNNGRKHKDNVKFYYAKWMEDQAQALIDQT 383
            MPK++CDYCDTYLTHDSPSVRKTH +GRKHK+NVK YY KWME+QAQ+LID+T
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT 53
The following BLAST results are available for this feature:
BLAST of TCONS_00065007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU1C6.803e-2381.13U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
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