TCONS_00065006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065006
Unique NameTCONS_00065006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065006 ID=TCONS_00065006|Name=TCONS_00065006|organism=Clytia hemisphaerica|type=transcript|length=565bp
GTATTTTTCGTTCAACCGACTGTTTTTGCTGACGTCACTGATGAAATGAC
CATTGCTAAACAAGAGATTTTTGGACCCGTTCAATCCATCTTGAAATTCA
AAGACATCGACGAAGTGATTGCAAGAGCAAATGCCACCGCATACGGATTA
GGATCTGGAGTTTTGACCAAAGACATTGATAAAGCAATGAAAGTTGTGAA
TGGGATTGAAGCGGGAACTGTCTGGGTGAATTGTTACAACTACACACATC
CTCAATGTCCGTTCGGTGGTTTCAAACAATCTGGTCATGGAAGAGAACTG
GGAAAATACGCGCTGAAGGAATACACCGAAGTTAAACAGGTGACGATGAA
ACTTTACAACCAATGATCAGGCGTTGGCGAGTCTTCTTATGGACAGTTTC
TTTGAGTGAAGGAGTGATCGTGACGAGATGGCGAATGATCGAATTATCTC
ACAAGGGGATGGCGCTGGATGGATTCTTTTGCCCTCAcctttcaaaaatg
attttgtagactttttataagaatagtttttgtacaaaaagaaaagtcaa
atttaaaatgaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_428:210042..214004+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065006 ID=TCONS_00065006|Name=TCONS_00065006|organism=Clytia hemisphaerica|type=transcript|length=3963bp|location=Sequence derived from alignment at scaffold_428:210042..214004+ (Clytia hemisphaerica)
GTATTTTTCGTTCAACCGACTGTTTTTGCTGACGTCACTGATGAAATGAC
CATTGCTAAACAAGAGGTAAGGAGAATGGGATGAGTTAAAGAGAGTTGGG
AACGAGGTTATTTCGTTTAACCAAcagtttttgctgacgtcacTGACGAA
GTGGTCAATAAGAGGTAAGGTGGTGTCGGAAAGAAGGTTTTGAGCGAAAC
TTGTATGACAACTCCATACAAGATTCCCTACGGTCTGAGTGATTCCTCTG
ATGAAAACTTGAGTTTTTTTTGTTCTCTCTACCTTCTTAGATTTTTGGAC
CCGTTCAATCCATCTTGAAATTCAAAGACATCGACGAAGTGATTGCAAGA
GCAAATGCCACCGCATACGGATTAGGATCTGGAGTTTTGACCAAAGACAT
TGATAAAGCAATGAAAGTTGTGAATGGGATTGAAGCGGGAACTGTCTGGT
AGGTTGCTTAGCTTCTTGGTTGCACACTGACAGTATTTTCCATTTcgtct
tttcttctttttttttctgaattggTCCGGGCTTGAGCGAAAGGAAGTTT
CAATTATGTTTTCAAAACAACTGAGCTAGCTCAATTGCTTGTCATaacca
gtggcgtggtggcaggggggggcaggggggccaggccccccagcagagcc
cttttgagaaggggcgcccaaaaataagggacgccaagaaggatttttca
ggcgcccatatcgaaagattgacaaatgaaaaaacaaaaatggcNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNataatgagcgtatagagaggggcgccaaaaaca
aaaaatctttaaaaagggcgccatatttgccttggccaccccagaggaat
tttcccaccacgccactggtcATAACACCCTTACTTAGCAGACTGCCTTA
TCTATGAAAACTACAGGGATAATCAATCTTGAATTTGTAGGATCATAGAC
TAGAGTATTTTTATCTTGAATTTATAATGTCGCTGGATAAAGTAATAAGT
AGTAAAATGTTCAcccattttgttcaaaaattctttcaaatccaAAGGCC
TCTGATTGTTTCTcctcttccctttaattttatCACATTCATAAGCTGGA
CCGTTGTCTTCCAAGTGATTTTTTGTGTTGTTCTTTTGGTTTTGAATTAG
ATATCTCACTGCTTCCTTGCTTGTTGTACCCCATTTTCAttagacaggag
aaccgtcctgtatttttttataatctggtgtatacaggacgggtatgacc
tgtTAGGCACAaatctgcctcaaaaaatttataatgggaaattcgaattt
agcgctgccctcacttactaaaactaaaaccaaatttcggaaattGCACT
TTCTCTTAGAAattgtgaccagtaaaagaataacaaaatttgattggcta
tgttttcaaccgttattaggatctgggaaattcaaactctcagcccatgc
catgctatatatttcgccatcagcatatagaataagaaatcatagcatgg
atctccaggctacatTTTCATCTGTTATGATTCCGAGGAACACCGCTAGC
CTCGATTTTAAGTATTACGCCAAAATTAATGAAAAGATTGCTCAAATTCC
ACCATTTTTTAATAAACAGGGTGAATTGTTACAACTACACACATCCTCAA
TGTCCGTTCGGTGGTTTCAAACAATCTGGTCATGGAAGAGAACTGTAAGT
AAACATCCTACTCGTTCAATTATTACAGTCGAAAGAAATAGCgtaataaa
atatatttcaaggCTTTTAGTCATAGCTTCTGACTTTTCAGCCACTCATC
CATCGCTCCTAAAATCACCACTGAAAGTTTGGTTAGGGTTATTTGAAACA
ATttaagatattcaattttgttgttctgtaaggGTTCTTGTTCTTGGGga
gattcaaaatttcaatttatcaTTACCATACACATCTGACATCGGGAtga
gtttttataaaatattttacttattggtcatttgaagttaTAGAGATGAt
actttctttagaaaaagtaaaaagattttattaaaggtTAAAGAATTTAT
TACAGGTTATTGACCAACCAAATAAAATAAGAGCTTCTAAAGAATCCAGT
ATGACATCGATATTTAAACCAATAAGAACCATCACAACAAATATGACATG
TATCAAAAAATGACGATATTTCTTTTTCCAGGGGAAAATACGCGCTGAAG
GAATACACCGAAGTTAAACAGGTTCGTTTGATTTTAGTGATGTTGTACCG
TGAATTGCTATGGTCGGCAGGCCACGCACCTTTCTCAAATATTTGGCGAA
TTTTAATTTTGTAATAGCTAAGTCACAAATTATTGATCCGTTTTGCTCCT
AAACGAAAATGAAGCTCTACTATTGTTTAGAAGTGATGTAAGAAAggaat
ttaaccaatagaatgccttaattttgtttcggagcgaaacggaaccgtag
cgtGTGAACGTGCTCTGACTCATTCGATTTTCCATTGGTCGCCTGattat
aaatattttcagaaGAGCGGATTCTGAACTGGGGAACAACTGACTCGGAG
GCAACTCGGTATATTACCGTTCTTATGGCTAACTATCCAAAAGTTCACTC
AACATTTCCGCTGAAAATGCAAATTACTGAATATTTTTGAGATATGAACC
AATCCGAACCAAGTTGGTTGCTCATAAAAACTCTTCCAAATTATGTCCCA
GCTTGTTTAAACTTGTTTCTAATTGGCAGTTCAACAGCAGTCAGGTTGTG
CTAAGCAAGCGGTCCGGGCTCGATTCGCGGAGGTGTTATATGTTATCTAA
CCCTTTATACTATGTACAGCTTGTTGTATAAGGCAGCTCAGCTCTCTATC
CAATTTCGGTTGGTAAATGGGTGCCACTACTTCTGCAATCAGTGGGTCAA
TCGCGGGGTTTTCGGCGCTGTGTTGGCTTCGCCAAAAGTGAAATACTGTA
AGACTTGCTACAACAATCCTACCCCCGGGTCATATGATTAGCCAATGTAG
CTTCTCAGTTACGGAAACagctaattcatgatatgcaccactggagagtc
ttctgagaacttttgaaatttttcacccaatacgtcacttaaacaataga
aaaagtgacgtattggatggaaaatttaaaagttctcagaagactctcca
gtagtgcatatcatgaattgattgATTGTACCGCAGCACTGTCCGAAATT
AATGCTTTGACGCGtttaaacttttggattgttagcCTTAAGTATAGTAA
CCAATTCTTCTTTCTTGTCGCCTCTTGAAAAAACACTCTGAAACAAACAG
GAGAAATATGTGaaattttgtttattatttCCTTCAGGTGACGATGAAAC
TTTACAACCAATGATCAGGCGTTGGCGAGTCTTCTTATGGACAGTTTCTT
TGAGTGAAGGAGTGATCGTGACGAGATGGCGAATGATCGAATTATCTCAC
AAGGGGATGGCGCTGGATGGATTCTTTTGCCCTCAcctttcaaaaatgat
tttgtagactttttataagaatagtttttgtacaaaaagaaaagtcaaat
ttaaaatgaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040754XLOC_040754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065006-exon-scaffold_428-1491911889:210042..210107TCONS_00065006-exon-scaffold_428-1491911889:210042..210107Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1510915933:210042..210107TCONS_00065006-exon-scaffold_428-1510915933:210042..210107Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1575043694:210042..210107TCONS_00065006-exon-scaffold_428-1575043694:210042..210107Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1491911889:210332..210489TCONS_00065006-exon-scaffold_428-1491911889:210332..210489Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1510915933:210332..210489TCONS_00065006-exon-scaffold_428-1510915933:210332..210489Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1575043694:210332..210489TCONS_00065006-exon-scaffold_428-1575043694:210332..210489Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1491911889:212061..212135TCONS_00065006-exon-scaffold_428-1491911889:212061..212135Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1510915933:212061..212135TCONS_00065006-exon-scaffold_428-1510915933:212061..212135Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1575043694:212061..212135TCONS_00065006-exon-scaffold_428-1575043694:212061..212135Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1491911889:212623..212662TCONS_00065006-exon-scaffold_428-1491911889:212623..212662Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1510915933:212623..212662TCONS_00065006-exon-scaffold_428-1510915933:212623..212662Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1575043694:212623..212662TCONS_00065006-exon-scaffold_428-1575043694:212623..212662Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1491911889:213779..214004TCONS_00065006-exon-scaffold_428-1491911889:213779..214004Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1510915933:213779..214004TCONS_00065006-exon-scaffold_428-1510915933:213779..214004Clytia hemisphaericaexon
TCONS_00065006-exon-scaffold_428-1575043694:213779..214004TCONS_00065006-exon-scaffold_428-1575043694:213779..214004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:210042..214004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.9635	28.7387	28.403	36.8566	8.39843	6.27273	3.98083e-07	8.57718	4.04992	4.54942	0	3.97455	13.3008	22.8606	16.5743	17.2841	6.24497	13.9995	15.1142	9.92359	0	0.00180633	5.4368e-06	5.59872	1.31093e-07	1.85583e-05	0.0261039	0.00228583	0.000827567	1.49136e-08
Blast
[Close]
BLAST of TCONS_00065006 vs. Swiss-Prot (Human)
Match: AL1A1 (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.661e-51
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    4 FFVQPTVFADVTDEMTIAKQEIFGPVQSILKFKDIDEVIARANATAYGLGSGVLTKDIDKAMKVVNGIEAGTVWVNCYNYTHPQCPFGGFKQSGHGRELGKYALKEYTEVKQVTMKL 354
            +FVQPTVF++VTDEM IAK+EIFGPVQ I+KFK +D+VI RAN T YGL +GV TKDIDKA+ + + ++AGTVWVNCY     QCPFGGFK SG+GRELG+Y   EYTEVK VT+K+
Sbjct:  380 YFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKI 496
The following BLAST results are available for this feature:
BLAST of TCONS_00065006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A16.661e-5167.52Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
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