TCONS_00064988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064988
Unique NameTCONS_00064988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064988 ID=TCONS_00064988|Name=TCONS_00064988|organism=Clytia hemisphaerica|type=transcript|length=531bp
CACCGAATAAGATGCCTTTGTTCTGCCCTGTCCCAAATCCAGCAGAACTA
TTCTTGCCTTCCATAGCGAAGGGTGGATTCGGGCTATAGACAANCCAGCA
GAACTATTCTTGCCTTCCATAGCGAAGGGTGGATTCGGGCTATAGACAAC
AGTAATGTCACGCCCACATATTGGATTACGTTCTTTAATCAATGTGCAAT
TTTGAAAGGATTTTGTGATGTCTCGGAAGGAGTATCGTACGGTGCACACG
TTATGTTGTAACCATAACATTGGATCGTTCTGCACATGCTCGCCGTGTCC
CGCATTACCAGGTGTTGTTGCATTGCGTCCTGCATTACCAGGTGATAATG
GTGTTGTTGCATTGCGTCCTGCATTTCCAGGTGATGCGGGGGACGTTTTA
TTGCCGGATGATGGTTCAAAACAAATCAGACTAAACACTGCGAAAATGTG
TACAAGTTGGaataaaaacattataattCAAAGGTTAGAATTTCAGTTTT
TTATTTCCAAATCCCTGCACATAATTCAGTC
Run BLAST on NCBI

protein sequence of TCONS_00064988-protein

>TCONS_00064988-protein ID=TCONS_00064988-protein|Name=TCONS_00064988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MFLFQLVHIFAVFSLICFEPSSGNKTSPASPGNAGRNATTPLSPGNAGRN
ATTPGNAGHGEHVQNDPMLWLQHNVCTVRYSFRDITKSFQNCTLIKERNP
ICGRDITVVYSPNPPFAMEGKNSSAXLSIARIHPSLWKARIVLLDLGQGR
TKASYSV
Run BLAST on NCBI

transcript from alignment at scaffold_427:516493..517023

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064988 ID=TCONS_00064988|Name=TCONS_00064988|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_427:516493..517023 (Clytia hemisphaerica)
GACTGAATTATGTGCAGGGATTTGGAAATAAAAAACTGAAATTCTAACCT
TTGaattataatgtttttattCCAACTTGTACACATTTTCGCAGTGTTTA
GTCTGATTTGTTTTGAACCATCATCCGGCAATAAAACGTCCCCCGCATCA
CCTGGAAATGCAGGACGCAATGCAACAACACCATTATCACCTGGTAATGC
AGGACGCAATGCAACAACACCTGGTAATGCGGGACACGGCGAGCATGTGC
AGAACGATCCAATGTTATGGTTACAACATAACGTGTGCACCGTACGATAC
TCCTTCCGAGACATCACAAAATCCTTTCAAAATTGCACATTGATTAAAGA
ACGTAATCCAATATGTGGGCGTGACATTACTGTTGTCTATAGCCCGAATC
CACCCTTCGCTATGGAAGGCAAGAATAGTTCTGCTGGNTTGTCTATAGCC
CGAATCCACCCTTCGCTATGGAAGGCAAGAATAGTTCTGCTGGATTTGGG
ACAGGGCAGAACAAAGGCATCTTATTCGGTG

Coding sequence (CDS) from alignment at scaffold_427:516493..517023

>TCONS_00064988 ID=TCONS_00064988|Name=TCONS_00064988|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_427:516493..517023 (Clytia hemisphaerica)
atgtttttattCCAACTTGTACACATTTTCGCAGTGTTTAGTCTGATTTG
TTTTGAACCATCATCCGGCAATAAAACGTCCCCCGCATCACCTGGAAATG
CAGGACGCAATGCAACAACACCATTATCACCTGGTAATGCAGGACGCAAT
GCAACAACACCTGGTAATGCGGGACACGGCGAGCATGTGCAGAACGATCC
AATGTTATGGTTACAACATAACGTGTGCACCGTACGATACTCCTTCCGAG
ACATCACAAAATCCTTTCAAAATTGCACATTGATTAAAGAACGTAATCCA
ATATGTGGGCGTGACATTACTGTTGTCTATAGCCCGAATCCACCCTTCGC
TATGGAAGGCAAGAATAGTTCTGCTGGNTTGTCTATAGCCCGAATCCACC
CTTCGCTATGGAAGGCAAGAATAGTTCTGCTGGATTTGGGACAGGGCAGA
ACAAAGGCATCTTATTCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040750XLOC_040750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064988-exon-scaffold_427-1491911889:516493..517023TCONS_00064988-exon-scaffold_427-1491911889:516493..517023Clytia hemisphaericaexon
TCONS_00064988-exon-scaffold_427-1510915933:516493..517023TCONS_00064988-exon-scaffold_427-1510915933:516493..517023Clytia hemisphaericaexon
TCONS_00064988-exon-scaffold_427-1575043694:516493..517023TCONS_00064988-exon-scaffold_427-1575043694:516493..517023Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064988-proteinTCONS_00064988-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:516493..517023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110179	0	0	0	0	0	1.15829	1.74513	2.30109	1.13934	0.958994	0.646993	0.988182	1.1476	0	0.0671402	0.212636	0.340205	2.13077	5.52236	1.10739	0	0	0.201867	0.293305	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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