TCONS_00064978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064978
Unique NameTCONS_00064978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064978 ID=TCONS_00064978|Name=TCONS_00064978|organism=Clytia hemisphaerica|type=transcript|length=325bp
CTCGAACAAACGTTGCCATACCATTTCATAAAGGTGCTCATAATTGTTGT
TGATGATGTAGAGAAGAAGTTTGTTCTGGTGATTAATGAATGCGATGTCG
ATGATATCATTTTCATCCACATCCACCACTGTAATGTCTGCATTATACAT
CAACAAAACGCCCACTGTCTCTATGTGTCCCTCTGCAAAAGCCAACCATA
ATGGCGTCACTTTCATTTCATCTTGAGTTTTTACCTCTAATCGTGACGGT
TTGTTTTCGACCAGTCGGTTGACGGTTTTGAAGAAGCCTTCGTATGCTGC
ATAATGCAAAGGCGTCCACCCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00064978-protein

>TCONS_00064978-protein ID=TCONS_00064978-protein|Name=TCONS_00064978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
KGWTPLHYAAYEGFFKTVNRLVENKPSRLEVKTQDEMKVTPLWLAFAEGH
IETVGVLLMYNADITVVDVDENDIIDIAFINHQNKLLLYIINNNYEHLYE
MVWQRLFE
Run BLAST on NCBI

transcript from alignment at scaffold_427:258780..259104

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064978 ID=TCONS_00064978|Name=TCONS_00064978|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_427:258780..259104 (Clytia hemisphaerica)
CAAAGGGTGGACGCCTTTGCATTATGCAGCATACGAAGGCTTCTTCAAAA
CCGTCAACCGACTGGTCGAAAACAAACCGTCACGATTAGAGGTAAAAACT
CAAGATGAAATGAAAGTGACGCCATTATGGTTGGCTTTTGCAGAGGGACA
CATAGAGACAGTGGGCGTTTTGTTGATGTATAATGCAGACATTACAGTGG
TGGATGTGGATGAAAATGATATCATCGACATCGCATTCATTAATCACCAG
AACAAACTTCTTCTCTACATCATCAACAACAATTATGAGCACCTTTATGA
AATGGTATGGCAACGTTTGTTCGAG

Coding sequence (CDS) from alignment at scaffold_427:258780..259104

>TCONS_00064978 ID=TCONS_00064978|Name=TCONS_00064978|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_427:258780..259104 (Clytia hemisphaerica)
AAAGGGTGGACGCCTTTGCATTATGCAGCATACGAAGGCTTCTTCAAAAC
CGTCAACCGACTGGTCGAAAACAAACCGTCACGATTAGAGGTAAAAACTC
AAGATGAAATGAAAGTGACGCCATTATGGTTGGCTTTTGCAGAGGGACAC
ATAGAGACAGTGGGCGTTTTGTTGATGTATAATGCAGACATTACAGTGGT
GGATGTGGATGAAAATGATATCATCGACATCGCATTCATTAATCACCAGA
ACAAACTTCTTCTCTACATCATCAACAACAATTATGAGCACCTTTATGAA
ATGGTATGGCAACGTTTGTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040740XLOC_040740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064978-exon-scaffold_427-1491911889:258780..259104TCONS_00064978-exon-scaffold_427-1491911889:258780..259104Clytia hemisphaericaexon
TCONS_00064978-exon-scaffold_427-1510915933:258780..259104TCONS_00064978-exon-scaffold_427-1510915933:258780..259104Clytia hemisphaericaexon
TCONS_00064978-exon-scaffold_427-1575043694:258780..259104TCONS_00064978-exon-scaffold_427-1575043694:258780..259104Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064978-proteinTCONS_00064978-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:258780..259104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.38508	0.33877	11.9602	6.8439	25.9502	43.4352	33.2448	30.9641	22.3085	13.239	0.813575	0.633679	0.173657	0.931801	0.229581	0.235313	0	0	0	1.29803	0	0.318793	0.656698	0.879131	0.83869	1.34261	1.35776	1.72918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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