TCONS_00064974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064974
Unique NameTCONS_00064974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064974 ID=TCONS_00064974|Name=TCONS_00064974|organism=Clytia hemisphaerica|type=transcript|length=1797bp
TGAGTTTTTACCCGAATCATTTTTGCactttaaaatgcattttatcAACA
TAAGCACATATTAGAAGCAATGGCTACACTTTCAAGTACAGTGACTCCAA
TTCTGAAGTATTGGAATCAAGAGGAAAAGTTCTCATCTGTTGCAAAAGCC
AGGTCATCGAATGATGGATCATTTTTGGCACTAAATGTTGAGAACAATAT
TCTTGTTGTTGCTCATTGCAGATGTTCAAAAGAAGATGTATTATCGACTG
AGACAAACAAttTTGTTTGGGGAGCTTCATCTTTGCACAGTGATAGAGTC
TTGGATTCACCGACTCAAAGTCAATTCTTATACATTGTTGATCACGAACT
CAACATCACTGTATTTGAATTGAACATTTCAAAAGACACCTTGAACTATT
CCATTGTCACTTTGATTGGCTCTTCATTTTTACTGGCAACAAAAGATATA
CGAGAGCTTGGTGATTTATCACTAGTCTCAGCTTCAGTTGACAGTCAAGG
GGAAACTCACTCAGTGATATGTCTTGTTAACAAGCAATACATTGCACAAA
TCATGATATCCAAAACAAATGAACCTTTTGTACAAGAGATGATGCAGGTT
TGTAAGGAGGATGTCCTTGGTTCGAATGATGTGACCCATGCAAAGAGAGT
TGAAGATATCATTTTCTGTATATCTGAGCAGTTGGTCCTCTATGCTATTG
CTGCACAAACTCATGAAGTTGTTTTACAGATGAATCTGCAAGATAAACTT
CTTTTGTATGATGTGCAACACTTAGATGCCACCTTTGACTCAACTCAATT
CAAACTGGTATTAATCGATGAGTCCTTGCAGATCCATTCCATCCatattc
acaaaagtttgttACTAGGCAACTCACCAGATTCTTCCAACAAAAAGTGG
CCAAATATATGGAGCTATAGGGTTGGACATATGAGTGACAGCAAAAAGAT
TGGAAAGAGAAGGCGAAAAATGAAACATACTTCTATTGAAGTTTCAACTA
CACCAGCTGAAGAATCGATGAGAGATCTTACGTGCGATAACTTGGTTGCT
TCCAACACATCTATAATGATGATACTAAAACCTAAAAACAGACATGAATT
AGAGCAGGAAAACAAACAATGCCTCGTTTACTTTAATACTATGGATAATA
CTTTCAATTCACTTGATCTGGACACCGAAACATGTTTATGTTACAGCAAT
AATCCACATTTCCCAACTTTGTTGATTTCCATCCACTCAATAACAATACC
AACCTTTAATGCAAACCAAGAACAACTAATTGATACtATTATTCAGTATA
GTGGTATTGACCAAGCAGAGGTGATTTGTAAAACCAACAATTGGGACCAA
TTCAGCATCCCATTGCATACTTTGGAAGTTGGGTTACAACACAGACAGTT
CGAAACCGTTGCCTTCTTTTTGAAAAGTCGAGAGAAAGTATTCACTCGAT
ATTGGAGGAGTGTCGGTGAACTATCATCATCCTTCAACGCTGGTGGTGGT
GGAAGTCCTTCAAAATCCTTTACTTCACAAAGGTCGTACACTGAAAATAT
TAATTCTGATGAAATGGTATCTGCTATTGAAATGTTGATGAAATCGTTAA
AATCCTGCTCAACTGGAAAACACaaacagaatttttttgaatcaCTTTTA
AAGCTTTGTTTATCATACTTTAACGATCTCATACAAGATGGAATTTTTGC
ATTGGAAATGGAATCTTACCATTCCAAAGAAGATCTACCCATATTGAGGT
CGAACAGTACCACAAGTGATCCTGGAGAATATGGGTTCAATTTTCTN
Run BLAST on NCBI

transcript from alignment at scaffold_427:330992..341424-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064974 ID=TCONS_00064974|Name=TCONS_00064974|organism=Clytia hemisphaerica|type=transcript|length=10433bp|location=Sequence derived from alignment at scaffold_427:330992..341424- (Clytia hemisphaerica)
TGAGTTTTTACCCGAATCATTTTTGCACTTTAAAATGCATTTTATCAACA
TAAGCACATATTAGAAGCAATGGCTACACTTTCAAGTACAGTGACTCCAA
TTCTGAAGTATTGGAATCAAGAGGAAAAGTTCTCATCTGTTGCAAAAGCC
AGGTCATCGAATGATGGATCATTTTTGGCACTAAATGTTGAGAACAATAT
TCTTGTTGTTGCTCATTGCAGATGTTCAAAAGAAGATGTATTATCGACTG
AGACAAACAAGTAAGAGCATTAAATAGTTCAATCATAAAGTGTATATTTT
TTTTCTTTGGACAAATTTGTTTGCTAAAATTTAAATTTAAACCAGTGTGG
AATCCATGGCAAAGATATTTTGAGGATCAAGAAGGTTACACNAATCTAAA
GCGTTCGAAAAACAGACAATGGTAGGGTATTATCTAGCGCCATAATAGTA
TAGTATACAATAAAAAAGCTTTGCTGTTTTTCTTTGAAAGAATCCCCTCT
TCACAAAATTTCGGTTATTTTTTCCTCGATTTTAGACCCTAAAACTTGAG
AATTTCAAAAATTGGGTGGCACACCCTCGTCATTTCGAAAACCTTCTCAA
AATCATTCATCGGCGGCCTAGGCTCGAGGAGGAGGCGGCGGGCGGGGGAA
GGTGCAAAAGGCGGCTGCACTCCCTGCGGTGACAAAATAACTAGACGGTA
AATAAAGTTTACGCTTTAGATCACCAGGCTACCACTTTCACTTTTGATTT
TGAAGGATTTCAAACAAATACTACTTTTAGTCCATGAGTTTTTACCCGAA
TCATTTTTGCACTTTAACTGTTTAAAATGCATTTTATCAACATAAGCACA
TATTAGAAGCAATGGCTACACTTTCAAGTACAGTGACTCCAATTCTGAAG
TATTGGAATCAAGAGGAAAAGTTCTCATCTGTTGCAAAAGCCAGGTCATC
GAATGATGGATCATTTTTGGCACTAAATGTTGAGAACAATATTCTTGTTG
TTGCTCATTGCAGATGTTCAAAAGAAGATGTATTATCGACTGAGACAAAC
AAGTAAGAGCATTAAATAGTTCAATCATAAAGTGTATATTTTTTTTCTTT
GGACAAATTTGTTTGCTAAAATTTAAATTTAAACCAGTGTGGAATCCATG
GCAAAGATATTTTGAGGATCAAGAAGGTTACACCCAATTGAGGACATTTT
CACGCCAAATTTATTTGGCGTACTGTGCATGAATTCCAGACTGGAATTTA
AAAGCTTATTGTATTGCTATCATTGGTGCGTGCCAAAGAGAAATCGTGTA
TTATTTTTTAAACTCAAATCAAATGACTTTGGAGGTTTGGTGAAATTGTT
GCCAAATTGCCGTCCCATGTTTTTTCAAATAGTCCTAAGTTGGAGCAGTT
GACAGTATAGAAAAACAGGATGGACCGGTCTATCGTTTGTCTATCTACGA
CCCTGTCGACGCATCAGTGATGAGACAGTCCAGTGTTTTATCTGATGCCA
AAAAATAGACCTTTTTTCAAAAAGGACGTCCTGTTGAATAATTATGTAGT
CCAGCCATAAAAACAATGATAGAGCCATGCATAATTACTGTATCATGCAT
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGCATATTGTAATAA
TTATGCATGGTTTTATCATTGTTTTTCTGCTGGACTACATAATTATTCAA
CAGGGTGGCCTCTTTGAAAAAAGGTCTATATCCCTCAGCCACACCGAAAA
CCTTTTGTCTTTTAAAATACTTTGAGGATGTGGTTCAGCCAATGAAATAG
AATTTGTCACATTAGCTATATTAGCAAGCATCGCTGGTCAAAATATTGAA
ATTTTTAAAAAAGCGCGCGAAAAACGTGCCCCGAACACTGGAAGTACTCC
GGAATCTTCTGGTGAAGACAGCAGTTTTTGCATCGTGCGTTTCCGGAGTG
CTGGGAGGGTCCTGACACATGGAGCAAGTCACTCGAAAGACGCACCGTAC
TCAAGTCCGGTGTTGAGATTGTCCGGTGTTAAAAACAGTGAGGCTGGAAC
TTCGATTTTTTGAGGATTACAATTTCACCAGCTTTTTAGCGATTTTTGCC
TCGCTTACCCAAATCTTGCAACCTCTTTGCCTTAAGGAAGATAGAAATTA
GAGTTTTTCAGCGTTCCAAAAAAAACGCATAGCAGAAACTTTTTCATCTT
CACAGGATCGATTCTCAACAACAAAATACATCTTTTGGTCTTTGCTTTGT
AGTGAGGTCTGTTAGCACAAAAATACTTCAGATGGTGATTAAAGCATGAA
ATTTGGCACAGATGATCCTTAGAGGGTTTAAAACTTAATTTTAAACATTA
ACACCAAATTTTGCCACCTGGCCATCTGCCAGATGACGTCATCAGGTGGC
TTAGCAAAAATTTATTTTTTTGAAAATATTTAAAATCTGATGGTATCAGC
AGAAAGAGCATGAAATGCTGATGAAAATGGAGGTATAAAACATGCCTTCA
AAATCTTCCTATCAAAAGTTATGAAGGTTTAAAGTTTAGTGATGACGTCA
TCATAAGCCTTTCCAGGTAAAACCTGAAATCCCGTAATAACGGAACTAGT
TGACCAAATTTAGTGTTTTATACATGAATCCATGTCAAAATTTGAAGTTC
CATCTGATGCTTGGGTCTAAACAACATAGGAAGGCTTAAAATACCTAAAA
AAATTAGTTGGTTGTACACTGTGCTCCTGAAGGGAGAACGCTGCGTTGCT
GATTTGCCTTGTAAAGCTCAAAATCTAAGTTTTAGTATTCTGTATTTCAA
CATCGGAATCAGAAAAAGCAATGAATTTTGATATGAATTCATGTATAAAA
CATGAAATTTGGTCAATTTGTACCAAAATTACGAGGTTTTTAAGTTTTGC
CTGGAAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTTTGATAT
ATATATATCAAACACTTTTATACTATTATCATATCAGTAAAATAGTATGT
ATTTTATATATTATTTATGTAACATCAGCGGTCAACATCAATGCTCTCTA
AGGAATCGAGTTTCTAAAACTCAAAAATACAAAGCAGGACAGGAATTTTA
TATATACACGTTGCGCATCCCTTATATCAGAACATATAAGAGGGGATGTG
TGCAGCGTAGATGCAATGTCATATCAATAGAATTTTTGCTAGGCCTGATA
CCATTTTGACACAAACGGTGAAAACATTACGTAATGACTCCACACAATAG
CCTGATAGTAGACACTTTTCATGTACTAGATATTAACTTATCATTGTTTT
GCGAGCAGAAAACTGATTCACAAGCTTTTAATAAACATTTTTGCCAGCCA
TCTGATTTTATTTTTTTCTTAGATGAACAATATGACTTCTTTTTCATTTT
TATAGTTTTGTTTGGGGAGCTTCATCTTTGCACAGTGATAGAGTCTTGGA
TTCACCGACTCAAAGTCAATTCTTATACATTGTTGATCACGAACTCAACA
TCACTGTATTTGAATTGAACATTTCAAAAGACACCTTGAACTATTCCATT
GTCACTTTGATTGGCTCTTCATTTTTACTGGCAACAAAAGGTATCTTTTA
ACATTTTATTTAAATTTAAGATTTCTTGAAATGTCTGTAAAAATTGCAAA
AATCAATTTTTTTCTATTTGATGACAATGATTTTAGGTGTTGGATATATC
TGATGAATTACCATCAATCAGTATTGATTTTCATGGGCCAATATGAAAAG
TGAGGGGGGCTAAAAAGTTGGGAAAAATTGGCTAATAAATATTTTTGGAG
CTACCCCGGTGAGGTGGAGGTCCTATAAATTAACCCATGTTCGTTCGTTA
GTTAGTTAGTTAGTTCGTTAGTTAGTTAGTTACCAGCTTTTCTCGAGATT
GGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGGTGCATGACCATAAAC
CCTCGAATGTGACGGAGCCCGAAAGTAGGGTACAATCATAGTTAAAAGAT
GGCTCAAGCAGATTTTTGCAAAAAAAATTTTTTGGCTCAAAAATCGCCTT
TTTATCTATAAGAACCACTTTTAATAAGAATACATCAATGTTCCTAGCCA
TATTATTATTATTATTATTTTTATTAGTTTTTTTTAAGATGAAAATGTCA
CGGTGGAGGGTAATGATTTTAGTTTTCTGTAAACACTTATTATTTTTTTG
GCTGAAAAACGAATTTTTATCTATAAGAATCACTATTTATAAGCATAGAT
CAATGTTATTAGCCAAATTATTTTTTTATTATTATTTTTTCTAACAGTAG
AAAATGTCACGATAGAGTGCGACGGTTTGAGTTTTCTGGAAACCTTATTT
ATTAAGCTGTCATTTTTCTGATAGTGGTTTTTATAACGAATAATAGCTTT
TTTATTTATTTTTCAAAAATCTTTTTCAATAGTGTTGATAGTTTCTCTCA
ATAGATATGCTTTCATTTTCTTTATTTTTTTGTATCTTGACCAGTTATGT
CTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCAGGT
ANCTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGAT
TAGTTTGATAACCAGGTAGGTCCATAAAAGTATCGCTTGTTACCCTTTAA
ACGCCTAAGTACCCTTATCGGATAGAATCATTTTAAGGTTATTGAAAAAT
TTAATCTTCAAGATCATGGCTCCTTGCCCCCTCCGCCGAGGGGCTCATAA
TTGTAATCAATATTGTACATTTTTTACTACCCATCTCTAATTTTATAGAT
ATACGAGAGCTTGGTGATTTATCACTAGTCTCAGCTTCAGTTGACAGTCA
AGGGGAAACTCACTCAGTGATATGTCTTGTTAACAAGCAATACATTGCAC
AAATCATGATATCCAAAACAAATGAACCTTTTGTACAAGAGATGATGCAG
GTTTGTAAGGAGGATGTCCTTGGTTCGAATGATGTGACCCATGCAAAGAG
AGTTGAAGATATCATTTTCTGTATATCTGAGCAGTTGGTCCTCTGTATCT
TTTCGTTTGAATTTTTTTGCAATGAAATAAATTATATCCTTTTTAACACA
AAATAAGGTTTAGCATAAATAGTCATAATTGTGATAGATATTTTGGATAG
AGCAAGACAATAATGAAAAGATTTGTTTAAGTTTGTCTAAATTTCAAAAA
TGAAAGCAGTGAATGATTATATATTTGAGAGCTTATTATTCTTAACTTTA
ACTAAATTTCAATTTACTTAAGATGCTATTGCTGCACAAACTCTTGAAGT
TGTTTTACAGATGAATCTGCAAGGTAAAATTTAATGACATGATTTGAACA
ATTATAATCATTATTGTAATAAAGGTAATTTTGAACTGTAGCACGATTTT
TGAGTTTTTTTTGCACAGCAAACTGGCTCCAAGTTAAAATATTTTTGATT
TGTTTCCCTCGATTTATTTTGCTTGAATTTGAATGATAATTTTTTGATGC
AGTAAAACCGTTATAGTTTTCATTATTGTCATTTGATTTTCCAGATAAAC
TTCTTTTGTATGATGTGCAACACTTAGATGCCACCTTTGACTCAACTCAA
TTCAAACTGGTATTAATCGATGAGTCCTTGCAGATCCATTCCATCCATAT
TCACAAAAGTTTGTTACTAGGCAACTCACCAGATTCTTCCAACAAAAAGT
GGCCAAATATATGGAGCTATAGGGTTGGACATATGAGTGACAGCAAAAAG
ATTGGAAAGAGAAGGCGAAAAATGAAACATTCCTCTATTGAAGTTTCAAC
TACACCAGCTGAAGAATCGATGAGAGATCTTACGTGCGATAACTTGGTTG
CTTCCAACACATCTATAATGATGCNACACAAAATAAGGTTTAGCATAAAT
AGTCATAATTGTGATAGATATTTTGGATAGAGCAAGACAATAATGAAAAG
ATTTGTTTAAGTTTGTCAAAATTTCAAAAATGAAAGCAGTGAATGATTAT
TATATTTGAGAGCTTATTATTCTTAACTTTAACTAAATTTCAATTTACTT
AAGATGCTATTGCTGCACAAACTCATGAAGTTGTTTTACAGATGAATCTG
CAAGGTAAAATTTAATGACATGATTTGAACAATTATAATCATTATTGTAA
TAAAGGTAATTTTGAACTGTAGCACGATTTTTGAGTTTTTTTTGCACAGC
AAACTGGCTCCAAGTTAAAATATTTTTGATTTGTTTCCCTCGATTTATTT
TGCTTGAATTTGAATGATAATTTTTTGATGCAGTAAAACCGTTATAGTTT
TCATTATTGTCATTTGATTTTCCAGATAAACTTCTTTTGTATGATGTGCA
ACACTTAGATGCCACCTTTGACTCAACTCAATTCAAACTGGTATTAATCG
ATGAGTCCTTGCAGATCCATTCCATCCATATTCACAAAAGTTTGTTACTA
GGCAACTCACCAGATTCTTCCAACAAAAAGTGGCCAAATATATGGAGCTA
TAGGGTTGGACATATGAGTGACAGCAAAAAGATTGGAAAGAGAAGGCGAA
AAATGAAACATACTTCTATTGAAGTTTCAACTACACCAGCTGAAGAATCG
ATGAGAGATCTTACGTGCGATAACTTGGTTGCTTCCAACACATCTATAAT
GATGATACTAAAACCTAAAAACAGACATGAATTAGAGCAGGAAAACAAAC
AATGCCTCGTTTACTTTAATACTATGGATAATACTTTCAATTCACTTGAT
CTGGACACCGAAACATGTTTATGTTACAGCAATAATCCACATTTCCCAAC
TTTGTTGATTTCCATCCACTCAATAACAATACCAACCTTTAATGCAAACC
AAGAACAACTAATTGATACTGTAAGATTTGAAAAAAAAAATTTTCTAAAG
AAGGTGCACCCAGTATGAATTAACCTTTGTCTGTCCGTCTTTTTGTCTCT
TACCATGATTTTTTCGGTCTTTGTTGATCAGATTATTTTTTCTGATTTTT
TGAAAAGATGTAAAATGTCAAAACCCAATTGATAGGGAGTAAAATCCTTG
GAAGATTTGTAGAGTATTTCGTGGTAGGCAACCGCACGTGATTGGTTTGA
AAGTAGATAAGATTTTGTGAAAGAAGGCTTTTGAATTAGGCGTTCCAAAA
TGGCTGTATTCTAAATTCTTATTAATTCTAATTTTGTTTGAAGTGTTTTA
TTTTTATATTAATTTCTTCGTTCGTTTTTCAGATTATTCAGTATAGTGGT
ATTGACCAAGCAGAGGTGATTTGTAAAACCAACAATTGGGACCAATTCAG
CATCCCATTGCATACTTTGGAAGTTGGGTTACAACACAGACAGTTCGAAA
CCGTTGCCTTCTTTTTGAAAAGTCGAGAGAAAGGTATGAGAAAAGATGAT
TTTGTCTGTACATTTGATAGACAGCTACTTGTTTCAAATATAAAAGAACC
TTCTAGAGGGTGGCGTTTATTTGAGAAAAGTTTATTGCATTATTACATTT
GTAATAAAAATCGAACGTCATAACCTCTTTCTGAATGACCATTATTCTGC
TATGTTCTTTCCCTGCTTTCCTTTATTTTCAGTATTCACTCGATATTGGA
GGAGTGTCGGTGAACTATCATCATCCTTCAACGCTGGTGGTGGTGGAAGT
CCTTCAAAATCCTTTACTTCACAAAGGTCGTACACTGAAAATATTAATTC
TGATGAAATGGTATCTGCTATTGAAATGTTGATGAAATCGTTAAAATCCT
GCTCAACTGGTTCGTTTATATACATTCCAGAACTTAAGAACAAATTGAGA
ACAATCTAAACCTCAGATTTGAAATTTAGTAATTAAAAAGATGCGTTTTT
GAGTTACTTTCATGCCTTTAGATAAACCAAACTATTCATTAAGAATAGAC
TTTTTCATAAAATGTGTCACGAGCACTTATTTTCAAAATATTACCATGGT
ATTTGATTCAAAGAGGAGTTCGCTCTATTTAAAAAATATCACTTGAAGAC
TCAAGGGATATAATCAATTTGGTAATGCTTTCAAAACGAGGCAGTTGCTG
CACTCAAAATAAATTATGAAAAGGCCTAAAGATTCTAAGCTTGTAAGCTT
GGAATTAAGAACATCCAAACCTCAGTCAAATTTAATGGTGGCTCTTATGT
TTCTAAAAAACCGCTTACCTGGGGATGAGGTCATAAAAGTGGCCTCAAAG
TTGAACCAGCCAATTTGTTTTGCTTGCAAGTTTGATAATTACTTCTCATT
TTCAAGGAGAGTTCTTCGTTACTGATTTGAATATATTATATAATTTTTTT
GATGATGGTACTCTGTTGAGGTCGAAACGTTTAAAATAAGAATAAATTTC
AAAATTAACCAAGAAGCAGATTCTGTACCATTAAATCTTTTACTCAAGAT
GTATGAAAGGATTGATTTACTTGATAATTTTTTTTTTCACTTTAATTTCA
GGAAAACACAAACAGAATTTTTTTGAATCACTTTTAAAGCTTTGTTTATC
ATACTTTAACGATCTCATACAAGATGGAATTTTTGCATTGGAAATGGAAT
CTTACCATTCCAAAGAAGATCTACCCATATTGAGGTCGAACAGTACCACA
AGTGATCCTGGAGAATATGGGTTCAATTTTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040736XLOC_040736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064974-exon-scaffold_427-1575043694:341165..341424TCONS_00064974-exon-scaffold_427-1575043694:341165..341424Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:336035..336219TCONS_00064974-exon-scaffold_427-1575043694:336035..336219Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:334581..334826TCONS_00064974-exon-scaffold_427-1575043694:334581..334826Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:333521..333571TCONS_00064974-exon-scaffold_427-1575043694:333521..333571Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:332755..333299TCONS_00064974-exon-scaffold_427-1575043694:332755..333299Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:332242..332392TCONS_00064974-exon-scaffold_427-1575043694:332242..332392Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:331866..332042TCONS_00064974-exon-scaffold_427-1575043694:331866..332042Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1575043694:330992..331173TCONS_00064974-exon-scaffold_427-1575043694:330992..331173Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:341165..341424TCONS_00064974-exon-scaffold_427-1510915933:341165..341424Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:336035..336219TCONS_00064974-exon-scaffold_427-1510915933:336035..336219Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:334581..334826TCONS_00064974-exon-scaffold_427-1510915933:334581..334826Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:333521..333571TCONS_00064974-exon-scaffold_427-1510915933:333521..333571Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:332755..333299TCONS_00064974-exon-scaffold_427-1510915933:332755..333299Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:332242..332392TCONS_00064974-exon-scaffold_427-1510915933:332242..332392Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:331866..332042TCONS_00064974-exon-scaffold_427-1510915933:331866..332042Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1510915933:330992..331173TCONS_00064974-exon-scaffold_427-1510915933:330992..331173Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:341165..341424TCONS_00064974-exon-scaffold_427-1491911889:341165..341424Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:336035..336219TCONS_00064974-exon-scaffold_427-1491911889:336035..336219Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:334581..334826TCONS_00064974-exon-scaffold_427-1491911889:334581..334826Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:333521..333571TCONS_00064974-exon-scaffold_427-1491911889:333521..333571Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:332755..333299TCONS_00064974-exon-scaffold_427-1491911889:332755..333299Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:332242..332392TCONS_00064974-exon-scaffold_427-1491911889:332242..332392Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:331866..332042TCONS_00064974-exon-scaffold_427-1491911889:331866..332042Clytia hemisphaericaexon
TCONS_00064974-exon-scaffold_427-1491911889:330992..331173TCONS_00064974-exon-scaffold_427-1491911889:330992..331173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:330992..341424 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.119162	0.143622	0.799893	0.541548	0.00299215	8.03116e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.952604	5.18801e-05	0	0.186364	0	0
Blast
[Close]
BLAST of TCONS_00064974 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.169e-16
Identity = 55/214 (25.70%), Postives = 101/214 (47.20%), Query Frame = 1 
Query: 1141 MDNTFNSLDLDTETCLCYS-NNPHFPT---------LLISIHSITIPTFNANQEQLIDTIIQYSGIDQAEVICKTNNWDQFSIPLHTLEVGLQHRQFETVAFFLKSREKVFTRYWRSVGELSSSFNAGGGGSPSKSFTSQRSYTENINSDEMVSAIEMLMKSLKSCSTGKHKQNFFESLLKLCLSYFNDLIQDGIFALEMESYHSKEDLPILRS 1752
            M  T    DL+T+   C+S      P           +++ + +++  F   QE+ ++ ++ +      + +C  N W + SIP+H LE G+++RQ +TV FFLKS+E +              FN     S S  F    S+    N +E++ A+++L  +++   +    ++F E LL L LS+ N+ I++     E    H ++ + IL S
Sbjct:  446 MGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENL--------------FNPSSKSSVSDQFDHLSSHLYLRNVEELIPALDLLCSAIRESYSEPQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTS 645
The following BLAST results are available for this feature:
BLAST of TCONS_00064974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS2.169e-1625.70Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
back to top