TCONS_00064972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064972
Unique NameTCONS_00064972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064972 ID=TCONS_00064972|Name=TCONS_00064972|organism=Clytia hemisphaerica|type=transcript|length=1799bp
TTTACCCGAATCATTTTTGCACTTTAactgtttaaaatgcattttatcAA
CATAAGCACATATTAGAAGCAATGGCTACACTTTCAAGTACAGTGACTCC
AATTCTGAAGTATTGGAATCAAGAGGAAAAGTTCTCATCTGTTGCAAAAG
CCAGGTCATCGAATGATGGATCATTTTTGGCACTAAATGTTGAGAACAAT
ATTCTTGTTGTTGCTCATTGCAGATGTTCAAAAGAAGATGTATTATCGAC
TGAGACAAACAAttTTGTTTGGGGAGCTTCATCTTTGCACAGTGATAGAG
TCTTGGATTCACCGACTCAAAGTCAATTCTTATACATTGTTGATCACGAA
CTCAACATCACTGTATTTGAATTGAACATTTCAAAAGACACCTTGAACTA
TTCCATTGTCACTTTGATTGGCTCTTCATTTTTACTGGCAACAAAAGATA
TACGAGAGCTTGGTGATTTATCACTAGTCTCAGCTTCAGTTGACAGTCAA
GGGGAAACTCACTCAGTGATATGTCTTGTTAACAAGCAATACATTGCACA
AATCATGATATCCAAAACAAATGAACCTTTTGTACAAGAGATGATGCAGG
TTTGTAAGGAGGATGTCCTTGGTTCGAATGATGTGACCCATGCAAAGAGA
GTTGAAGATATCATTTTCTGTATATCTGAGCAGTTGGTCCTCTATGCTAT
TGCTGCACAAACTCATGAAGTTGTTTTACAGATGAATCTGCAAGATAAAC
TTCTTTTGTATGATGTGCAACACTTAGATGCCACCTTTGACTCAACTCAA
TTCAAACTGGTATTAATCGATGAGTCCTTGCAGATCCATTCCATCCatat
tcacaaaagtttgttACTAGGCAACTCACCAGATTCTTCCAACAAAAAGT
GGCCAAATATATGGAGCTATAGGGTTGGACATATGAGTGACAGCAAAAAG
ATTGGAAAGAGAAGGCGAAAAATGAAACATACTTCTATTGAAGTTTCAAC
TACACCAGCTGAAGAATCGATGAGAGATCTTACGTGCGATAACTTGGTTG
CTTCCAACACATCTATAATGATGATACTAAAACCTAAAAACAGACATGAA
TTAGAGCAGGAAAACAAACAATGCCTCGTTTACTTTAATACTATGGATAA
TACTTTCAATTCACTTGATCTGGACACCGAAACATGTTTATGTTACAGCA
ATAATCCACATTTCCCAACTTTGTTGATTTCCATCCACTCAATAACAATA
CCAACCTTTAATGCAAACCAAGAACAACTAATTGATACtATTATTCAGTA
TAGTGGTATTGACCAAGCAGAGGTGATTTGTAAAACCAACAATTGGGACC
AATTCAGCATCCCATTGCATACTTTGGAAGTTGGGTTACAACACAGACAG
TTCGAAACCGTTGCCTTCTTTTTGAAAAGTCGAGAGAAAGTATTCACTCG
ATATTGGAGGAGTGTCGGTGAACTATCATCATCCTTCAACGCTGGTGGTG
GTGGAAGTCCTTCAAAATCCTTTACTTCACAAAGGTCGTACACTGAAAAT
ATTAATTCTGATGAAATGGTATCTGCTATTGAAATGTTGATGAAATCGTT
AAAATCCTGCTCAACTGGAAAACACaaacagaatttttttgaatcaCTTT
TAAAGCTTTGTTTATCATACTTTAACGATCTCATACAAGATGGAATTTTT
GCATTGGAAATGGAATCTTACCATTCCAAAGAAGATCTACCCATATTGAG
GTCGAACAGTACCACAAGTGATCCTGGAGAATATGGGTTCAATTTTCTN
Run BLAST on NCBI

transcript from alignment at scaffold_427:330992..340634-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064972 ID=TCONS_00064972|Name=TCONS_00064972|organism=Clytia hemisphaerica|type=transcript|length=9643bp|location=Sequence derived from alignment at scaffold_427:330992..340634- (Clytia hemisphaerica)
TTTACCCGAATCATTTTTGCACTTTAACTGTTTAAAATGCATTTTATCAA
CATAAGCACATATTAGAAGCAATGGCTACACTTTCAAGTACAGTGACTCC
AATTCTGAAGTATTGGAATCAAGAGGAAAAGTTCTCATCTGTTGCAAAAG
CCAGGTCATCGAATGATGGATCATTTTTGGCACTAAATGTTGAGAACAAT
ATTCTTGTTGTTGCTCATTGCAGATGTTCAAAAGAAGATGTATTATCGAC
TGAGACAAACAAGTAAGAGCATTAAATAGTTCAATCATAAAGTGTATATT
TTTTTTCTTTGGACAAATTTGTTTGCTAAAATTTAAATTTAAACCAGTGT
GGAATCCATGGCAAAGATATTTTGAGGATCAAGAAGGTTACACCCAATTG
AGGACATTTTCACGCCAAATTTATTTGGCGTACTGTGCATGAATTCCAGA
CTGGAATTTAAAAGCTTATTGTATTGCTATCATTGGTGCGTGCCAAAGAG
AAATCGTGTATTATTTTTTAAACTCAAATCAAATGACTTTGGAGGTTTGG
TGAAATTGTTGCCAAATTGCCGTCCCATGTTTTTTCAAATAGTCCTAAGT
TGGAGCAGTTGACAGTATAGAAAAACAGGATGGACCGGTCTATCGTTTGT
CTATCTACGACCCTGTCGACGCATCAGTGATGAGACAGTCCAGTGTTTTA
TCTGATGCCAAAAAATAGACCTTTTTTCAAAAAGGACGTCCTGTTGAATA
ATTATGTAGTCCAGCCATAAAAACAATGATAGAGCCATGCATAATTACTG
TATCATGCATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGCAT
ATTGTAATAATTATGCATGGTTTTATCATTGTTTTTCTGCTGGACTACAT
AATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATATCCCTCAGCC
ACACCGAAAACCTTTTGTCTTTTAAAATACTTTGAGGATGTGGTTCAGCC
AATGAAATAGAATTTGTCACATTAGCTATATTAGCAAGCATCGCTGGTCA
AAATATTGAAATTTTTAAAAAAGCGCGCGAAAAACGTGCCCCGAACACTG
GAAGTACTCCGGAATCTTCTGGTGAAGACAGCAGTTTTTGCATCGTGCGT
TTCCGGAGTGCTGGGAGGGTCCTGACACATGGAGCAAGTCACTCGAAAGA
CGCACCGTACTCAAGTCCGGTGTTGAGATTGTCCGGTGTTAAAAACAGTG
AGGCTGGAACTTCGATTTTTTGAGGATTACAATTTCACCAGCTTTTTAGC
GATTTTTGCCTCGCTTACCCAAATCTTGCAACCTCTTTGCCTTAAGGAAG
ATAGAAATTAGAGTTTTTCAGCGTTCCAAAAAAAACGCATAGCAGAAACT
TTTTCATCTTCACAGGATCGATTCTCAACAACAAAATACATCTTTTGGTC
TTTGCTTTGTAGTGAGGTCTGTTAGCACAAAAATACTTCAGATGGTGATT
AAAGCATGAAATTTGGCACAGATGATCCTTAGAGGGTTTAAAACTTAATT
TTAAACATTAACACCAAATTTTGCCACCTGGCCATCTGCCAGATGACGTC
ATCAGGTGGCTTAGCAAAAATTTATTTTTTTGAAAATATTTAAAATCTGA
TGGTATCAGCAGAAAGAGCATGAAATGCTGATGAAAATGGAGGTATAAAA
CATGCCTTCAAAATCTTCCTATCAAAAGTTATGAAGGTTTAAAGTTTAGT
GATGACGTCATCATAAGCCTTTCCAGGTAAAACCTGAAATCCCGTAATAA
CGGAACTAGTTGACCAAATTTAGTGTTTTATACATGAATCCATGTCAAAA
TTTGAAGTTCCATCTGATGCTTGGGTCTAAACAACATAGGAAGGCTTAAA
ATACCTAAAAAAATTAGTTGGTTGTACACTGTGCTCCTGAAGGGAGAACG
CTGCGTTGCTGATTTGCCTTGTAAAGCTCAAAATCTAAGTTTTAGTATTC
TGTATTTCAACATCGGAATCAGAAAAAGCAATGAATTTTGATATGAATTC
ATGTATAAAACATGAAATTTGGTCAATTTGTACCAAAATTACGAGGTTTT
TAAGTTTTGCCTGGAAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
GCTTTGATATATATATATCAAACACTTTTATACTATTATCATATCAGTAA
AATAGTATGTATTTTATATATTATTTATGTAACATCAGCGGTCAACATCA
ATGCTCTCTAAGGAATCGAGTTTCTAAAACTCAAAAATACAAAGCAGGAC
AGGAATTTTATATATACACGTTGCGCATCCCTTATATCAGAACATATAAG
AGGGGATGTGTGCAGCGTAGATGCAATGTCATATCAATAGAATTTTTGCT
AGGCCTGATACCATTTTGACACAAACGGTGAAAACATTACGTAATGACTC
CACACAATAGCCTGATAGTAGACACTTTTCATGTACTAGATATTAACTTA
TCATTGTTTTGCGAGCAGAAAACTGATTCACAAGCTTTTAATAAACATTT
TTGCCAGCCATCTGATTTTATTTTTTTCTTAGATGAACAATATGACTTCT
TTTTCATTTTTATAGTTTTGTTTGGGGAGCTTCATCTTTGCACAGTGATA
GAGTCTTGGATTCACCGACTCAAAGTCAATTCTTATACATTGTTGATCAC
GAACTCAACATCACTGTATTTGAATTGAACATTTCAAAAGACACCTTGAA
CTATTCCATTGTCACTTTGATTGGCTCTTCATTTTTACTGGCAACAAAAG
GTATCTTTTAACATTTTATTTAAATTTAAGATTTCTTGAAATGTCTGTAA
AAATTGCAAAAATCAATTTTTTTCTATTTGATGACAATGATTTTAGGTGT
TGGATATATCTGATGAATTACCATCAATCAGTATTGATTTTCATGGGCCA
ATATGAAAAGTGAGGGGGGCTAAAAAGTTGGGAAAAATTGGCTAATAAAT
ATTTTTGGAGCTACCCCGGTGAGGTGGAGGTCCTATAAATTAACCCATGT
TCGTTCGTTAGTTAGTTAGTTAGTTCGTTAGTTAGTTAGTTACCAGCTTT
TCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGGTGCAT
GACCATAAACCCTCGAATGTGACGGAGCCCGAAAGTAGGGTACAATCATA
GTTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAAAATTTTTTGGCTCAA
AAATCGCCTTTTTATCTATAAGAACCACTTTTAATAAGAATACATCAATG
TTCCTAGCCATATTATTATTATTATTATTTTTATTAGTTTTTTTTAAGAT
GAAAATGTCACGGTGGAGGGTAATGATTTTAGTTTTCTGTAAACACTTAT
TATTTTTTTGGCTGAAAAACGAATTTTTATCTATAAGAATCACTATTTAT
AAGCATAGATCAATGTTATTAGCCAAATTATTTTTTTATTATTATTTTTT
CTAACAGTAGAAAATGTCACGATAGAGTGCGACGGTTTGAGTTTTCTGGA
AACCTTATTTATTAAGCTGTCATTTTTCTGATAGTGGTTTTTATAACGAA
TAATAGCTTTTTTATTTATTTTTCAAAAATCTTTTTCAATAGTGTTGATA
GTTTCTCTCAATAGATATGCTTTCATTTTCTTTATTTTTTTGTATCTTGA
CCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTG
ATAACCAGGTANCTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAAT
GTTCACTGATTAGTTTGATAACCAGGTAGGTCCATAAAAGTATCGCTTGT
TACCCTTTAAACGCCTAAGTACCCTTATCGGATAGAATCATTTTAAGGTT
ATTGAAAAATTTAATCTTCAAGATCATGGCTCCTTGCCCCCTCCGCCGAG
GGGCTCATAATTGTAATCAATATTGTACATTTTTTACTACCCATCTCTAA
TTTTATAGATATACGAGAGCTTGGTGATTTATCACTAGTCTCAGCTTCAG
TTGACAGTCAAGGGGAAACTCACTCAGTGATATGTCTTGTTAACAAGCAA
TACATTGCACAAATCATGATATCCAAAACAAATGAACCTTTTGTACAAGA
GATGATGCAGGTTTGTAAGGAGGATGTCCTTGGTTCGAATGATGTGACCC
ATGCAAAGAGAGTTGAAGATATCATTTTCTGTATATCTGAGCAGTTGGTC
CTCTGTATCTTTTCGTTTGAATTTTTTTGCAATGAAATAAATTATATCCT
TTTTAACACAAAATAAGGTTTAGCATAAATAGTCATAATTGTGATAGATA
TTTTGGATAGAGCAAGACAATAATGAAAAGATTTGTTTAAGTTTGTCTAA
ATTTCAAAAATGAAAGCAGTGAATGATTATATATTTGAGAGCTTATTATT
CTTAACTTTAACTAAATTTCAATTTACTTAAGATGCTATTGCTGCACAAA
CTCTTGAAGTTGTTTTACAGATGAATCTGCAAGGTAAAATTTAATGACAT
GATTTGAACAATTATAATCATTATTGTAATAAAGGTAATTTTGAACTGTA
GCACGATTTTTGAGTTTTTTTTGCACAGCAAACTGGCTCCAAGTTAAAAT
ATTTTTGATTTGTTTCCCTCGATTTATTTTGCTTGAATTTGAATGATAAT
TTTTTGATGCAGTAAAACCGTTATAGTTTTCATTATTGTCATTTGATTTT
CCAGATAAACTTCTTTTGTATGATGTGCAACACTTAGATGCCACCTTTGA
CTCAACTCAATTCAAACTGGTATTAATCGATGAGTCCTTGCAGATCCATT
CCATCCATATTCACAAAAGTTTGTTACTAGGCAACTCACCAGATTCTTCC
AACAAAAAGTGGCCAAATATATGGAGCTATAGGGTTGGACATATGAGTGA
CAGCAAAAAGATTGGAAAGAGAAGGCGAAAAATGAAACATTCCTCTATTG
AAGTTTCAACTACACCAGCTGAAGAATCGATGAGAGATCTTACGTGCGAT
AACTTGGTTGCTTCCAACACATCTATAATGATGCNACACAAAATAAGGTT
TAGCATAAATAGTCATAATTGTGATAGATATTTTGGATAGAGCAAGACAA
TAATGAAAAGATTTGTTTAAGTTTGTCAAAATTTCAAAAATGAAAGCAGT
GAATGATTATTATATTTGAGAGCTTATTATTCTTAACTTTAACTAAATTT
CAATTTACTTAAGATGCTATTGCTGCACAAACTCATGAAGTTGTTTTACA
GATGAATCTGCAAGGTAAAATTTAATGACATGATTTGAACAATTATAATC
ATTATTGTAATAAAGGTAATTTTGAACTGTAGCACGATTTTTGAGTTTTT
TTTGCACAGCAAACTGGCTCCAAGTTAAAATATTTTTGATTTGTTTCCCT
CGATTTATTTTGCTTGAATTTGAATGATAATTTTTTGATGCAGTAAAACC
GTTATAGTTTTCATTATTGTCATTTGATTTTCCAGATAAACTTCTTTTGT
ATGATGTGCAACACTTAGATGCCACCTTTGACTCAACTCAATTCAAACTG
GTATTAATCGATGAGTCCTTGCAGATCCATTCCATCCATATTCACAAAAG
TTTGTTACTAGGCAACTCACCAGATTCTTCCAACAAAAAGTGGCCAAATA
TATGGAGCTATAGGGTTGGACATATGAGTGACAGCAAAAAGATTGGAAAG
AGAAGGCGAAAAATGAAACATACTTCTATTGAAGTTTCAACTACACCAGC
TGAAGAATCGATGAGAGATCTTACGTGCGATAACTTGGTTGCTTCCAACA
CATCTATAATGATGATACTAAAACCTAAAAACAGACATGAATTAGAGCAG
GAAAACAAACAATGCCTCGTTTACTTTAATACTATGGATAATACTTTCAA
TTCACTTGATCTGGACACCGAAACATGTTTATGTTACAGCAATAATCCAC
ATTTCCCAACTTTGTTGATTTCCATCCACTCAATAACAATACCAACCTTT
AATGCAAACCAAGAACAACTAATTGATACTGTAAGATTTGAAAAAAAAAA
TTTTCTAAAGAAGGTGCACCCAGTATGAATTAACCTTTGTCTGTCCGTCT
TTTTGTCTCTTACCATGATTTTTTCGGTCTTTGTTGATCAGATTATTTTT
TCTGATTTTTTGAAAAGATGTAAAATGTCAAAACCCAATTGATAGGGAGT
AAAATCCTTGGAAGATTTGTAGAGTATTTCGTGGTAGGCAACCGCACGTG
ATTGGTTTGAAAGTAGATAAGATTTTGTGAAAGAAGGCTTTTGAATTAGG
CGTTCCAAAATGGCTGTATTCTAAATTCTTATTAATTCTAATTTTGTTTG
AAGTGTTTTATTTTTATATTAATTTCTTCGTTCGTTTTTCAGATTATTCA
GTATAGTGGTATTGACCAAGCAGAGGTGATTTGTAAAACCAACAATTGGG
ACCAATTCAGCATCCCATTGCATACTTTGGAAGTTGGGTTACAACACAGA
CAGTTCGAAACCGTTGCCTTCTTTTTGAAAAGTCGAGAGAAAGGTATGAG
AAAAGATGATTTTGTCTGTACATTTGATAGACAGCTACTTGTTTCAAATA
TAAAAGAACCTTCTAGAGGGTGGCGTTTATTTGAGAAAAGTTTATTGCAT
TATTACATTTGTAATAAAAATCGAACGTCATAACCTCTTTCTGAATGACC
ATTATTCTGCTATGTTCTTTCCCTGCTTTCCTTTATTTTCAGTATTCACT
CGATATTGGAGGAGTGTCGGTGAACTATCATCATCCTTCAACGCTGGTGG
TGGTGGAAGTCCTTCAAAATCCTTTACTTCACAAAGGTCGTACACTGAAA
ATATTAATTCTGATGAAATGGTATCTGCTATTGAAATGTTGATGAAATCG
TTAAAATCCTGCTCAACTGGTTCGTTTATATACATTCCAGAACTTAAGAA
CAAATTGAGAACAATCTAAACCTCAGATTTGAAATTTAGTAATTAAAAAG
ATGCGTTTTTGAGTTACTTTCATGCCTTTAGATAAACCAAACTATTCATT
AAGAATAGACTTTTTCATAAAATGTGTCACGAGCACTTATTTTCAAAATA
TTACCATGGTATTTGATTCAAAGAGGAGTTCGCTCTATTTAAAAAATATC
ACTTGAAGACTCAAGGGATATAATCAATTTGGTAATGCTTTCAAAACGAG
GCAGTTGCTGCACTCAAAATAAATTATGAAAAGGCCTAAAGATTCTAAGC
TTGTAAGCTTGGAATTAAGAACATCCAAACCTCAGTCAAATTTAATGGTG
GCTCTTATGTTTCTAAAAAACCGCTTACCTGGGGATGAGGTCATAAAAGT
GGCCTCAAAGTTGAACCAGCCAATTTGTTTTGCTTGCAAGTTTGATAATT
ACTTCTCATTTTCAAGGAGAGTTCTTCGTTACTGATTTGAATATATTATA
TAATTTTTTTGATGATGGTACTCTGTTGAGGTCGAAACGTTTAAAATAAG
AATAAATTTCAAAATTAACCAAGAAGCAGATTCTGTACCATTAAATCTTT
TACTCAAGATGTATGAAAGGATTGATTTACTTGATAATTTTTTTTTTCAC
TTTAATTTCAGGAAAACACAAACAGAATTTTTTTGAATCACTTTTAAAGC
TTTGTTTATCATACTTTAACGATCTCATACAAGATGGAATTTTTGCATTG
GAAATGGAATCTTACCATTCCAAAGAAGATCTACCCATATTGAGGTCGAA
CAGTACCACAAGTGATCCTGGAGAATATGGGTTCAATTTTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040736XLOC_040736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064972-exon-scaffold_427-1575043694:340373..340634TCONS_00064972-exon-scaffold_427-1575043694:340373..340634Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:336035..336219TCONS_00064972-exon-scaffold_427-1575043694:336035..336219Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:334581..334826TCONS_00064972-exon-scaffold_427-1575043694:334581..334826Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:333521..333571TCONS_00064972-exon-scaffold_427-1575043694:333521..333571Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:332755..333299TCONS_00064972-exon-scaffold_427-1575043694:332755..333299Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:332242..332392TCONS_00064972-exon-scaffold_427-1575043694:332242..332392Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:331866..332042TCONS_00064972-exon-scaffold_427-1575043694:331866..332042Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1575043694:330992..331173TCONS_00064972-exon-scaffold_427-1575043694:330992..331173Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:340373..340634TCONS_00064972-exon-scaffold_427-1510915933:340373..340634Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:336035..336219TCONS_00064972-exon-scaffold_427-1510915933:336035..336219Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:334581..334826TCONS_00064972-exon-scaffold_427-1510915933:334581..334826Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:333521..333571TCONS_00064972-exon-scaffold_427-1510915933:333521..333571Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:332755..333299TCONS_00064972-exon-scaffold_427-1510915933:332755..333299Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:332242..332392TCONS_00064972-exon-scaffold_427-1510915933:332242..332392Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:331866..332042TCONS_00064972-exon-scaffold_427-1510915933:331866..332042Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1510915933:330992..331173TCONS_00064972-exon-scaffold_427-1510915933:330992..331173Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:340373..340634TCONS_00064972-exon-scaffold_427-1491911889:340373..340634Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:336035..336219TCONS_00064972-exon-scaffold_427-1491911889:336035..336219Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:334581..334826TCONS_00064972-exon-scaffold_427-1491911889:334581..334826Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:333521..333571TCONS_00064972-exon-scaffold_427-1491911889:333521..333571Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:332755..333299TCONS_00064972-exon-scaffold_427-1491911889:332755..333299Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:332242..332392TCONS_00064972-exon-scaffold_427-1491911889:332242..332392Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:331866..332042TCONS_00064972-exon-scaffold_427-1491911889:331866..332042Clytia hemisphaericaexon
TCONS_00064972-exon-scaffold_427-1491911889:330992..331173TCONS_00064972-exon-scaffold_427-1491911889:330992..331173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:330992..340634 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0211917	0.029969	0.176859	0.109364	0.000673336	1.49823e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.184085	1.00381e-05	0	0.0367463	0	0
Blast
[Close]
BLAST of TCONS_00064972 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.169e-16
Identity = 55/214 (25.70%), Postives = 101/214 (47.20%), Query Frame = 3 
Query: 1143 MDNTFNSLDLDTETCLCYS-NNPHFPT---------LLISIHSITIPTFNANQEQLIDTIIQYSGIDQAEVICKTNNWDQFSIPLHTLEVGLQHRQFETVAFFLKSREKVFTRYWRSVGELSSSFNAGGGGSPSKSFTSQRSYTENINSDEMVSAIEMLMKSLKSCSTGKHKQNFFESLLKLCLSYFNDLIQDGIFALEMESYHSKEDLPILRS 1754
            M  T    DL+T+   C+S      P           +++ + +++  F   QE+ ++ ++ +      + +C  N W + SIP+H LE G+++RQ +TV FFLKS+E +              FN     S S  F    S+    N +E++ A+++L  +++   +    ++F E LL L LS+ N+ I++     E    H ++ + IL S
Sbjct:  446 MGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENL--------------FNPSSKSSVSDQFDHLSSHLYLRNVEELIPALDLLCSAIRESYSEPQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTS 645
The following BLAST results are available for this feature:
BLAST of TCONS_00064972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS2.169e-1625.70Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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