TCONS_00064966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064966
Unique NameTCONS_00064966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064966 ID=TCONS_00064966|Name=TCONS_00064966|organism=Clytia hemisphaerica|type=transcript|length=1766bp
TCAGATACATCCTGAAAATACAAATGATAGTCCATTCGCTATCGAGAAGA
CATTACTACAAAGTGCTTTAAAGGCATATCCAAAAGTCCATGATGCTTTA
TATTCGTATTCAAATGATCTGGAAAATAAAGATGTTACTATGTACAGGTT
GTTACAGGACAATACTCAACTGGAAATTCGTCATTGGTTTGGTTGGCAAT
CTAATAATTCGCTGGCTATTGAAGATGAAAACACCTTATCTGAATTACCA
CATTTCTCGAACCCATTCCTCTCGGAGCGTTACGCTGTGGACGTCAAGCT
GTCCTATGATTATTATTTGCAGCAAGCAAGACCAATGCATGCTTTCCTTG
TTTACATGAAAAATCGCACGCATACAAGCGAGAGCATCGACGCCGTCACA
TCATCAGTATGCAGGCTAGCCATCGAAAATTACGATTCAGCCATCATCTC
AACGTCCTGTATTCTTTTCATGGAGTTGATAGAAGGCCCGTATCAATTAT
TGAAGGTGGACGTCAAAGCTGCTGTTCTCATCTCAAAGTATTGGAACAAA
AGAGTTTCTTTCGAGAAGAAAACAAACGCACAAGACGTTAAGACGTTGCT
AAtTGATTTATTATTGGCAAAGAAATCAAGAGAGAACCTCATTACCCTTG
TCAGCCATTTGGAAGACTGCATCGAAGTTGCTATTCAcgaaaataaggaa
attgacAGgtTTTCGTTCGAAGCTATATGTCATTGGAAGATAGCCATTCA
ATTTTGTCGTCTTCATCAGCTGCCCTTGACCACGTGTTTCGTCAAATCGT
GTTGTCAAACGGATAATTGGCTTCCTTTATTCTTGTTCATTCAACTGTAT
CAAATACCACCAACACAGATATTGGAAGTTATGGAAGAGTGTATGTCAAA
CAACTCACTGAAAGAACATCTTCTGGCTATTGTCAAGAAATCTCGAGAAA
TTGCTGACGgcaaaacagaaaagaaaaggaaaacttCAAAAGTGAAGAAA
GAAACGCAACAAAACCCTAATACCCTCGTTGAACAGAAATCGAAACACGT
TAAGAAGAACTATCGTGCTCAATTTTACTCGAAACTTGGTACCACTGGTT
TACCCTCCTCCAGAGGGAGTGTCAGTGAAAATCCTCGTGAGTTGGCTACC
TCGCCATCAGATGAAAACATGACGAGAATAACCAATCAGCTCCCCNAGAG
GGAGTGTCAGTGAAAACCCTCGTGAGTTGGCTACCTCGCCATCAGATGAA
AACATGACGAGAATAACCAATCATCTCCCGATGACATCGACGCCGAAGAA
AGATCAAGTAGATGGCAATAACCAGGGACATGGTCAAAAGCTGCAGCATG
GTGACGATTTACAACTTTTAGATGATACACATTTCCAAGAGATGTCGGAA
ATTCCTAATAGTAACAATTTGGTCGATTTGCTCCTACAATGTGATGACAA
CAATACACCATGGAGAAAATTACTGGCTTATTCGCTGGCTGTTTTTAATC
CACTCTTAACTGTATTGGCCGCTTGTTATGAGGAAGCTGATTGTTGGGAG
TGTCTTTGCGTTTGGTATGTGTGTAGTGTGAATGAAGAAATGAGATTCAA
GATATGCAGCAGTATACTTGATATCAAAGATGAAGACGCAATTTTGATGC
TTCGGAATCATCGCTGGTCAAATGAAGATCTTTTGACAATTGTGAAATGT
TTGTTGACTGAAGGTGTCAAATACGCAAAGCTCATTTGTcatggttttat
cattttcaGAAAGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_427:303731..317766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064966 ID=TCONS_00064966|Name=TCONS_00064966|organism=Clytia hemisphaerica|type=transcript|length=14036bp|location=Sequence derived from alignment at scaffold_427:303731..317766- (Clytia hemisphaerica)
TCAGATACATCCTGAAAATACAAATGATAGTCCATTCGCTATCGAGAAGA CATTACTACAAAGTGCTTTAAAGGCATATCCAAAAGTCCATGATGCTTTA TATTCGTATTCAAATGATCTGGAAAATAAAGATGTTACTATGTACAGGTT GTTACAGGTAATTCTTCGACAAACTACCTTAATTTTAGAGGGTGCTAAAA ATCAGCCATATGTGTGGGAAAAGTTAGAGTCTCAAAATTTTCATACGGTG GTTGCAGAGAACTTTTTTTGATTTTTTTAATTAGGGCAAAAACAGCCGGA TTTTGGCCAAACAACTTCATTGTAGATCAGCTTTCAACCCTTTTAGTGAA CCCTCTACCCTAAAAAGTCATGAATAGGTCATTTACCTCTAGTGCTTCTA CCCCTGGGGTTTTGAAATGTTTTACTAAGTCAAGTTGCCAATTCGTTTAA TTGATACTTACTTTTTTACTCGTTTCAATACACCTTTTCGACCGTAGCCG TCAATTGCAGTGCGAGCATTTCTTTGTCCGTTTTACTGCCCTAAAACCGT CCCAGTCTTTTTTTTGCGCCTTTAGAAAGACACTAGAAAAAAGTATAAAA AAGGATTGGATCGAGTTTAGGGTGGTAAAAAGTGGGACGTGCCTGACCGC GCGATTACGGTCGAAAAAGTGTATATGACTTACTTTTTCACTTGTTTCGA TAAGACTTACTTTTTCACTTGTTTCAATAGGACAATACTCAACTGGAAAT TCGTCATTGGTTTGGTNTTTTTCACTTGTTTCAATAGGACAATACTCAAC TGGAAATTCGTCATTGGTTTGGTTGGCAATCTAATAATTCGCTGGCTATT GAAGATGGCGAGTTTACTTAGATTTATCACTCACCCGAGTCACAGAAAAG TTTAGCCAAAAACACAATAATCCGTTGAGAAAAATACCTAAAAATCTTAT TTCCGTTGAGAAAAATATCTCAACACCCCATACCTTTTTATTTTTGTGAA AATGGAATGAGAAGATTTCCCTTGAAAGGAGGGTTTTAAGATCGGTGTAG GACTGGAATCTTTTATTTTTCGGACCGAATTTAGGAAATTAGATCAATCG TCGTAGACGGAAAATTGGGCTGTTTTAGTCTAGAAAAACGGAATTCAGCA AAAAACGGTCAGATTTTTTCGGAAATAGGGTTAAATAATTAAAATTTCCC GAATTTCTGACGGGATTTTTTTTTTAACTCGTCTTTTTTAGTTTTAATTT ACTTTTGTACTTTATTGAACCTTTTCATATTTTCTTTTCTCCGTAGAAAA CACCTTATCTGAATTACCACATTTCTCGAACCCATTCCTCTCGGAGCGTT ACGCTGTGGACGTCAAGCTGTCCTATGATTATTATTTGCAGCAAGCAAGA CCAATGCATGCTTTCCTTGTTTACATGAAAAATCGCACGCATACAAGCGA GAGGTATTTAACAGAATTCAATGATATAACATTCATTTTCATTAAAATTT TGTTTTTAATCGTTTCTATTTTTAAATTCTAGCATCGACGCCGTCACATC ATCAGTATGCAGGCTAGCCATCGAAAATTACGATTCAGCCATCATCTCAA CGTCCTGTATTCTTTTCATGGAGTTGATAGAAGGCCCGTATCAATTATTG AAGGTGGACGTCAAAGCTGCTGTTCTCATCTCAAAGTATTGGAACAAAAG AGTTTCTTTCGAGAAGAAAACAAACGCACAAGACGTTAAGACGTTGCTAA GTAAGTCCTAACTTTAGAACTAATTTTTGACAATTTTCCCCTAAATTTCA CCTCTTGTATATAAGTGTAGAAGTATGAAACTTGAGTTATTTAGTAAAAA GTCTAGATAGCTGAGCCGAGTCGGCTGGTTGTTGACCCCGTGAAAACAAT CAAAAGACTGCCTAAAAGTCCTAGATTACTTGGCTATTCACGTAATATCG GCTCTATCGACTCTAAAGTCTGCGACTGCAGTCGGAGGCGATCAGTAGGC TCCTCTTTCGATAGCTAGCTACTGGAATGTAGTTTTAGGGCGCCACTCTT TGTCATTGGATTGTTTCACTTTTAATGGAGTACATTTATGTACTTTTATT GAAAACAAACTTATTTGATATTGTATTTTACCTACATTCAATCAAAGCAT TTTCTTAATAGAATGCGATTTAAGATAGCTTGGGCCTCTTTTATTTAGCC TAGGTTGAATGAAAATATTTTTACATAGCGAAGAAAGTGCAACCCCCCCC CTCCAAAAAAAAAATACTTGGCTTATTAACAAGGTAAAATGTTAAAAAAC TTTATAGTTACGTTTAGCTTGTAACATTTTAGAAATGATGAATTAATTTT CTTTCAGTTGATTTATTATTGGCAAAGAAATCAAGAGAGAACCTCATTAC CCTTGTCAGCCATTTGGAAGACTGCATCGAAGTTGCTATTCACGAAAATA AGGAAATTGACAGGTACACTCTCTTAAAAGCTTTGGTTTATATGCATCGT ATATCGATGGGTTAAAGAGAACAACATTGAATAGTTTTCGAAAGTTTGAT TGATTGAAGTCATAATTTTTCGCAAAAACAATTCCGCAGTGCAAGGTTAT GATATGTCTGTTTTTTGTTGAACTAGTGATTGACACCTTAGTTTTGCCCA AAATATTTTCTTAGAAGACAACATAAAGCGTGAAAATCAGCTCCCGCGAA AATTAACCAATAAAAATGCAAAGCAAAAGTTTATGTTTTCAATAAATGTT TATCTCCATTTGAATTACCACTGATATTATATAACATTCTACTGCAAGTA TACTAGTAGCCGAGAACGTGTTAAAAACCAAATTAATTCATGATAACCAT GACGTTACGTTTTATACGGTGCAACCGTACTACCAAACTACAATCAGCGC CGAAATATATTGACAGTTTTGGGGATTTTAAGGTTTTCAGAGTTTAAAGC GCGGGCGAGAATCGTAGTTTCAGTACTTCCACTTTGTTTCATTGGATTTT TCGATTTTGGGGGGTTGAGTTGCTTTCAGGCTATATTCTCAGCCATATTG GAATATTTTTGAGCTTTTCGACCCTGAGATTCTGGGCTCGTTATAAGTTT TCAGTCCCATATTAGCTAAAACTCTATATTTAAACCGTAATTTATAGCAC TTAAAAATCACTCACTGTTCTAAACTTTTGTACCAAATATTATGGAGGTG ATTGTAGCCGAGGTGTTAGCAACTAGTTTTATTGTCTAAATTAGAAATCA GGCAAACAACCGGTCTTTTTTCGGGTGTTTCCGTATAAAACATTACGTCA TGAATATCACGAATTCAAGGTTCTTTAGTATCCCTTAACAGTGCCGATGA TAAAAATTACTAAAACTGATTTTTTTCAAATTCAGGTTTTCGTTCGAAGC TATATGTCATTGGAAGATAGCCATTCAATTTTGTCGTCTTCATCAGCTGC CCTTGACCACGTGTTTCGTCAAATCGTGTTGTCAAACGGATAATTGGCTT CCTTTATTCTTGTTCATTCAACTGTATCAAATACCACCAACACAGGTAAA AACTACTATAATCCCAACCTCGTTCCTGTGTATCCCAGGCTTTAATTACG TTACTGATTGACGCCAGAAGATGTCAGGGTATTATCTAGCGCTATTAGTA AGCATTAAAAAGCTGATAATGCACAGGGAACGAGGTTGCTAAAATCCCTT TTTATACGGCATCTTTATAATATTGTTTGACTAGAGTTATTTATAGTCGG CGTTATACAGTAATACAGGTGTTATACGATCATTTATGACCATAACGGGA TAATATTAATTTGCNTAAGAAGAAGGTCAACCATTTCTAGGTAGAGCTCC AAGTATCCTCCCATGCCTTCTCTCAATTTTGGAATCTCTGGAATCTTAGT CCGTATATATTCAATGATGAACTCTAAATCTTTGTCATCTGAATCTCCAT TGAGAAATTCTTTAAAAAATCNATACAGTAATGTTTAATCTTCTAAACCT GCTAGGATGTGGTATCATCCTGGGGATGTCATAATGCCTTCAATCGTAGC CATGTAGACACGGTTTGTTTTAGATGTGAGAAGTTTTGATACAGTGTAGA AAGTAAATAAAAAAAAAGATCTTGTCCTGGCGTTGTAGATTTCTGGTGTA TGAACAGTCAAAAGCTCCAACACAATTTCTTGTTAAAAAATCACAGTAAG TGGCAAAGAATACATTTCTCCCATAAGTTGGGCACCCACTCATTTAACGT TTGCTTCATTGTTTGGATGTCAGTTTCTTCTATTTCCCATCTCTTTTGAC CGTAGTCATTATGTGAGAAAAAGCTTCGTCTGCGCGTAACGTTGTCGAGT TTGTCTCTCATCGCTGCCAAAAGATGATTAATCTTCATCCATCTTTCACT GGCGCCAACATTTTCTGTCTTACCGGATAGACCGCCTGTTGATTTGCATG CACGATTGACTGTCATTTCAATGACTTGATCACAAGGGATTTTTGTAAAT GGTTGTCCAGTAAGTGAGACGGTAAAACCGTGTAGCAAAATTTCGTTATA AAGCTGAGGATGGTCTTCCTTTAGCATTTTCATATGTACATAGCAATACG TGAGATTTCTGGCATAATTGTGGCGATTGTGGGTGAAACAGTAGGGTAGA AACTCTTTGATGCATTGCAAGTAGCCATCCCAGTTTGATGTACGTTGACA GTGAATCGTACTAAGAAGAAGGTCAACCATTTCTAGGTAGAGCTCCAAGT ATCCTCCCATGCCTTCTCTCAATTTTGGAATCTCTGGAATCTTAGTCCGT ATAAATTCAATGATGAACTCTAAATCTTTGTCATCTGAATCTCCATTGAG AAATTCTTTAAAAAATTCCTCAATCCCACTTTCGTCCAGATTTAACTCTC CCTTGTCTTTCAAGTGATCGACTTTGCTCCGAACGATGGCTTCGTACATG AGTTTATGTAAGTGGATTGCGTGTTTAACGTCACCACCCTTCAAAGCATT TGTAATGGTTCCTTCACCACCACATCCACTGTATACAAGCCAAGTTATAA GTCCGGAATCTTTAAAGCGTGAATAAATTGTTTTCAACATACACATGATT ACATGAAAACCGCCCATTCGTGGTATCAATTTTGTGAAGATATCAGACCC ATCAGAATCCATCTTAAACATGACATCAAGGACTTTCGAGTAAATAGCTT GATCCACCTATGTAAAAACAAAGAAGAAAGCTTGTATTGCTCAGTGTGAT TTCTAAGATGATTATTACTTTAAGCTAAGTAAACGGTTTGAAGTTAACAA TATTGAAGTTAAGTTCCAGAAATAGAGTCTGAAATCACAAAAGAAGCTTA AAATTTGACATACCTCTAAAAACATTTTCTCCAAGTTGAGCTCGTCTAAT ATGGCCAACGCCCTATCAATGGCGGCATTGATTACCCCCATTTCCGTCGG TGGAGATGTAAACGGAGGCAAATATCCAACAGATGCCTTTGTTGCTAGAT CTGATCCATCTTCAAGTAGCTTGAAAAATCCAGTCCACGATGGCACTCTC AATCCCTCTTCGACATAAAGTTTTGATGCTACGTATCTGGCAACTGCCCA CTCGCTACTCTTCCTTTTCACATTATTAAGTTCCGTATTGTCATTATCCT TTTCATACTTGAATTTCTTGCAATTGTTTGCTCTGCTAAACTTTTGTGTA TCGAAATCCATCTTTGTTCCTTTATAGGCTCTGTGGTTCTTACGTTCAAA ATTATAATCAGCCTCGACTTCCACTCCAGCTTGCTTGGTATAAAAGTCAT CCGGTTGTATCAATATGTTATTGGTATTGTGCGTCTGTTTTCCGTGAAAG TTTTTATTGTCAAAGTCAATATTATCGAATACATAAGTTGGAGTGGTCTT TGCTTTGACATTTGGAGGAACGAGTTTGGTGCTTTTGTCGACCCACTCAG CCCACTTGTCTTCAATGAATTTCGCGTCCGTATACGTGATGCCGTGACCA AGGCGTGATAAATCGGTAACTACATTGCTGGAACCTGTTTTACTGTACTC AGATAATGATAAAAGTACTTGATTTAATGACGGTGTAGCGTTTGGAGTTA GAGATTCGATATCTGTGCATAATTTTGTAACTTTCGGCACTTTTGAAGGT GGCAGTTTTACGATTCCATCCTTTCCATATGAAGCGTCTGGGTAGACAAT CCAACCAATTAAGTTATATAATAGGTCAGAGGATGGTGAAAGATCGCTGT TGATAATATCTTGAGGTGTTGGGGGCCAAAGCTTTTCCTTTTCTTTGTTC GCGGAACCAATAGATCGGCCAATCATTCTACCAATATTTTTGACACTGAT TGATTCTTCAATGCCTGTCGAGTTAGACATAGCCTCCAAACAATCTGACA CGATTCTATCGCTCTTCGCCAAAACATACTCCGACTCGTTACCTTTGCCT CTTTGTAAGAACATTAGCCTATCTCCAAATTTCTCCTTCAATTTACGTTT TAAGTCTACACTTCTAACTTTAGGTTTTTGTGTTAGTTCTGAAAAGTAAG ACGACAACTGAGCGAGCGTGTAAATTTCCTGTCTTTTGATGATATGATGT GTAATAAGTGTGGAAAATTCTTCCTCGAAGTCAACTAAGTCTCTTTTCTC AGAGTTTTTAGAGTCTTCCACTTTTTTATACTTCGCACGCCAATAAGGAG TCCTAAAGCTATTATAACAATGTTTGTGATAAGCAACATTGGCCTCAAAT AAGCTTTTGACAGTACTTGCTAGTAATATTCTTTGAGAAGCAAGCTTATA ATCTTCGTTATTATATTCCAAATGCAGCTTTGAAAATTCGATCAATGTTT GTTCTGTAAGATGTCTCTCTTCGTTCTCTTTCTTGTAAGTCATCTCTATG ACTGGAAGGTCTTTTCCTTTTGCTCCTCTTTTATTTTCGTTACATATTAT ACATAGCTTCTCCTTGTTATCATTAACTGAAGCATACGAGCAGGACTGGC GTGTGCTGCGTCTAACGTTTGCTGTCTCCTCCATTTGCATCACGTTTAAA GAGCTCGGGATTGCACTGTCGATGTTTTCGGGTTGATCTGGAGGCTGATT TGAGACTTTCCTTTGCGAAGTCATGAAAGATTCTTTTAAAAATTTACCCT TGCATGATTTATGTGCCATCAGTTCTTTATCTGAATCCCAATCAACCAAT GACAACACTTTGTTAAATTCGTGATCATATTTGGTCCAATTTTCAGCAAA CGTTCTGAAATTTGTCTTATGTCTTACTGTTTCAAAGTTACAGCGCTTCG CATTTCTCTTCAAACAACTTTCGAAGAAGATAGCACAGGTAACTCTACCT AAATAAATTGATGGTCGCGTCTTAAAAACTGGTTTCGGAAAAACTTTTTC ACTTCGATTTTCCTTATCTTCTTTCCTTTCCATCTTATCATCACTAAATC CACACATAAACTAATAAATAACAACTTCTTCTAGTTTTTTTTTAATGTAA GAAGATATAAAAACATGCAGAAAGTTTTCCGTTTATTTTCTAATGGTACA GCTGCCAATTGATAGCGAAATAAATAAACATGTAACAGCGCACGAAGAAA ATGAAAATAAAACACCTTTTCAATAGGTGACTTTGTCAGGCGTGCGTTAT TAATTANCGATGACTTGAGAATCTACTAGGGTTGAACTGTCGAAAACCGA AAAAAACAGAGGTTGGAGTGTTTTTCCGGGCGGAGCATGGCTATGTGACT GACTATTTCCCATTAAGAAATCTCAATTTTAGAAGCTTTTAGAAGGTTAA TTGGAGCTGTAAGATTTACTCACAAAAGGAAAAGCAAAGCGGAAACATTA CGGACAATATTTCNATTGATAGCGAAATAAATAAACATGTAACAGCGCAC GAAGAAAATGAAAATAAAACACCTTTTCAATAGGTGACTTTGTCAGGCGT GCGTTAATTAATTAATTATCCTCCGAAAAAAAAATAAGAAAAACCTCAGT TTAATTCAAGTTTTTTGACACTTATATGAATTAATTGTGAAAATAAACCT AAAATGACGTCATCATTAAGGCTCATTTGCAGCATGACCGGGACATTTTT AGACCCAAGTTTATATCTCAAATTTACTTGTTTTTTANATTACGGACAAT ATTTTATAGATATTGGAAGTTATGGAAGAGTGTATGTCAAACAACTCACT GAAAGAACATCTTCTGGCTATTGTCAAGAAATCTCGAGAAATTGCTGACG GCAAAACAGAAAAGAAAAGGAAAACTTCAAAAGTGAAGAAAGAAACGCAA CAAAACCCTAATACCCTCGTTGAACAGAAATCGAAACACGTTAAGGTAAA AAAACTTATGCAGTGCTTTCACTACTACCTTTACATTTTTTTATAAATTT GGACTTTAATATACGTTAAATTGCTGAAAGTCTTGGGACAATAGAAAAAT GTTTATGTTCGCCTTTCTCATTTTTTTGTGACGGGACCTACTGTAAGGCC GAAGAACTATTTTTGTGTCTGAATGTACGTCAAAAATAGCTGTAAGATGA TTTACAGTCGATACTCTCTTATTCGGCGTTTTTCACTATACGATACGCTC CATTATTCGATAATATTGAAAGTCATTGTCAACAAGAAACACTTCTAAAC GACGATCCACTATTCGATAAGCTCCCTTATTTGATGAAAATCTAAATACC CCTTGAAAATTGAATTAGAGAACGCTAAAACTATACTTCATTTCATTTTT ATTGCTTTTTTTTGTATAGAAGAACTATCGTGCTCAATTTTACTCGAAAC TTGGTACCACTGGTTTACCCTCCTCCAGAGGGAGTGTCAGTGAAAATCCT CGTGAGTTGGCTACCTCGCCATCAGATGAAAACATGACGAGAATAACCAA TCAGCTCCCCNAGAGGGAGTGTCAGTGAAAACCCTCGTGAGTTGGCTACC TCGCCATCAGATGAAAACATGACGAGAATAACCAATCATCTCCCGATGAC ATCGACGCCGAAGAAAGATCAAGTAGATGGCAATAACCAGGGACATGGTC AAAAGCTGCAGCATGGTGACGATTTACAACTTTTAGATGGTATGTAGGCT ATGTCATATTTAGTCTGAATGGCAGACCTCCCAGACCCCGTGCAAAAACG TGCATGAGCACGGACCCGTTAGCAGATGTCATATCTTTCTTTGTTCCAAG CTTAAAGCTCCTCTTCATAAGACTTAAGTCGTAAGTCTGGAGCTGCCCAT TGTGTAGACTAGATTGTTTGCATCTTGGCAGTCGGTTTTCTTTCCTATAA ACAATAAAAATTTGCAGTAAAATATCGGGAATTTGCTTTTAAATGTTTTC TTTGTGTTATCTCCTGTTATAATAGCTTTTATGGAATAAAGCTCTGATAT TTGATTGGTTTCGATTGCAAACTTCACTTTTTTTCCAAGCAAAATATCCC CTCTTGATAACTTTCTATCAACACGTAAGTAAGTCTTGACCGCAGTCGGA GGCGACCCGAAGGCTCTTCTTTCAATAGCTATCTACTCGAAGTTAGGAAA GGGCGCCAATCTTTCTCACTGGATTGCTCCATGTACCCTTGATCCTTCTC TTAATTGCTGAATATCAAGCTTAAAGGCGTCATGTACCATTTTTGTACTA AGTTTATAGTCTTTGGTATGACCCAGCCGAGGATTGAACCCACGACCTTG CGCACTGTAGACGGATGCTCTACCACTGCACTACAGTCGCTAACAACACA ACTTTATTACAATAATACAGTTGGAACATTCACTTTTGCCCTCTTAAAGC TTTTTTCTATCAACAGATCTTTACAATAATACAGTTGGAACCAAAATTTA CTTTTGTGGTTTCAGATACACATTTCCAAGAGATGTCGGAAATTCCTAAT AGTAACAATTTGGTCGATTTGCTCCTACAATGTGATGACAACAATACACC ATGGAGAAAATTACTGGCTTATTCGCTGGCTGTTTTTAATCCACTCTTAA CTGTATTGGCCGCTTGTTATGAGGTAAGTTTTGTAAAAAAAATTGCCTTA CATATAAGTTATTTATTTACAGAATGATATTCTTATAAGAAAACGTGAAT TTTTTCGAAAGTCTATGTTCACAAATTGTCGGAACTTTTTTATGTTAGAC AATAGAAATCGATAAATGTGAAAACTNAAAGTCTATGTTCACAAATTGTC GGAACTTTTTTATGTTAGACAATAGAAAGCGATAAATGTGAAAACTCTTT CATCTTTTCACTCTGGCGAAAGTGGGCGATAGTGGGCGATAGAAAGCGAC ACAATATTTTCACCAAAAGTTAAAAAATATTTTTTTCACTCACTTTCTGT CGCTTTCCATCGGTTCCCAGTGGGAATCAAGCTTTTACCGTATATAACAA AATACTAAATTTGCTAATTTTTACTTTGCAGGAAGCTGATTGTTGGGAGT GTCTTTGCGTTTGGTATGTGTGTAGTGTGAATGAAGAAATGAGATTCAAG ATATGCAGCAGTATACTTGGTAAGATGTCTAGACAGTTGCACGGTTTTTT ATAAGAACCTCCAAAATTTCTTAGAAACGTTCTTAACTTTTTGAGTTTTA ATTTTAAAGATGTTCTTAGCATGTTCGTGCTTTCGCCATATTTTGAGTAG TTTTGTCCATTTTCCTCAGAAATTGGATCTTTTAGAGTCCACAAAGCCTT AAAATGTTCTTAACTTGTTCTTGATAATTTGGCCATCGAATCCCCAGGTT CTTATATACTTTGTTTTTATAAAAAAAGCGTGAATAATACGTAAAGATTA GGAACTCTGTGTTTTTAAAGTTTTGTTCGGAGAACATTTACGACTAGAAG ATCAGAATAATCGAGGCAACCCTTAAGCTAAGGCTGCACTGATAAGTTTT TCAGGTGACTACAATGTAAATTTTGCAGGCCCTTGTATATTTTTCCGTAA CAGGGGGGGATACAGCCGCAGGGTACTAACCCNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGTAGTCTTTGGTATGACCCAGCCGAGGATTGAACCCACGACCT TGCGCACTGTAGACGGATGCTCTACCACTGCACTACAGTCGCTAACAACA CAACTTTATTACAATAATACAGTTGGAACATTCACTTTTGCCCTCTTAAA GCTTTTTTCTATCAACAGATCTTTACAATAATACAGTTGGAACCAAAATT TACTTTTGTGGTTTCAGATACACATTTCCAAGAGATGTCGGAAATTCCTA ATAGTAACAATTTGGTCGATTTGCTCCTACAATGTGATGACAACAATACA CCATGGAGAAAATTACTGGCTTATTCGCTGGCTGTTTTTAACCCACTCTT AACTGTATTGGCCGCTTGTTATGAGGTAAGTTTTGTAAAAAAAATTGCCT TACATATAAGTTATTTATTTACAGAATGATATTCTTATAAGAAAACGTGA ATTTTTTCGAAAGTCTATGTTCACAAATTGTCGGAACTTTTTTATGTTAG ACAATAGAAAGCGATAAATGTGAAAACTCTTTCATCTTTTCACTCTGGCG AAAGTGGGCGATAGTGGGCGATAGAAAGCGACACAATATTTTCACCAAAA GTTAAAAAATATTTTTTTCCTTCACTTTCTGTCGCTTTCCATCGGTTCCC AGTGGGAATCAAGCTTTTACCGTATATAACAAAATACTAAATTTGCTAAT TTTTACTTTGCAGGAAGCTGATTGTTGGGAGTGTCTTTGCGTTTGGTATG TGTGTAGTGTGAATGAAGAAATGAGATTCAAGATATGCAGCAGTATACTT GGTAAGATGTCTAGACAGTTGCACGGTTTTTTATAAGAACCTCCAAAATT TCTTAGAAACGTTCTTAACTTTTTGAGTTTTAATTTTAAAGATGTTCTTA GCATGTTCGTGCTTTCGCCATATTTTGAGTAGTTTTGTCCATTTTCCTCA GAAATTGGATCTTTTAGAGTCCACAAAGCCTTAAGATGTTCTTAACTTGT TCTTGATAATTTGGCCATCGAATCCCCATGTTCTTATATATATACTTTGT TTTTATAAAAAAAGCGTGAATAATACGTAAAGATTAGGAACTCTGTGTTT TTAAAGTTTTGTTCGGAGAACATTTACGACTAGAAGATCAGAATAATCGA GGCAACCCTTAAGCTAAGGCTGCACTGATGAGTTTTTCAGGTGACTACAA TGTAAATTTTGCAGGCCCTTATTTATTTTTCCGTAAAAGTTTTTTGCTGC ATTTGCAAGAAGATTGCAGAAAAATTTGATGTGCTATAACACTGTTTAAT TTCCTGAGTGAATGCAACGCAATGTAAATAACATTGCAGTCACCTGGAAA ACGCATCAGTGAAGCCTTAGATATTTCGTTTATAGATATCAAAGATGAAG ACGCAATTTTGAGTAAGTTAATTTTTTGACTCCCACCATAAATATAATTC ATTCCTGGGTCGGAGGTAATCTCGGCAAAGGTTGGATATAAAATTGATAA AAATGCGTTTTGCTACGGGAAAAATAAAAAAGATGACTCGGCAAAATAAT AATCTTTACTCACGGTGGAATGAGCAGGGGGGTTGGGCACTTCAGATAAA AATCAACAATATTGGGGGGGGGGAGGTGTTCATAATTAAGTGCTATTGAC CTGATTTTGCTAAAAATCTCTAGGAAAGTGAAGGTTTTTGGCCAATTTTG GCACTTTGTAGCGTAAAGGTCATAAAATTGGGGGTTATTATAAAGTGATA TGGGGGTGATTTCTTTCCAAAAATTGAAAAAAATGACCCCACTACAATTA AGCACACAGGAGTAATTGTCAAACACTGTTTCTAATTCTTCTTTTATTAA GTTTTTTAAGGGGTTTTTTAGGGCCGGGTAACTCAGTCGGTAGAGCATTC GCTTTACAATCCAAGGGTTCATTCCACCTCCCAGGTCAAACGCAACTAGA AAAGGGGATAGACTCCCTCACTCATAACTTCGCCGACACCCACCAGATGA ATATACTTTCTTACGGTTTCATTTTTTGGAGTTGCTTCATGTGGACAATG TTTTATAAGCGGGTTTCAATTTTTTGATTTTATACGGGTGGACTGATGTG GGCGGACTGATGTGGGCGGGCGATTGCGCTTGATTATTGGAGGCAAAAAG ACTTACGATTTATATGGAGGTGAGTGAATGTCAATCAAATTTTTGAAAAC TACAAGTCATATCTCTTCGAAATTCATGAAAGGTAAGCCTATATACCTCT GAGAAAACATACTAAAATTTATTTTCAAAAAACCTACCAGAGACTTCATC AAAACAAAAAATGTTTTTGTCTCCAGCTAATGTTATGGTCTTTCTGCCTC CAAAAAATCGGGCGGTAAGTCACGTGAGTAAACAAATAACGTATCCCGAA AGCCGTCTATAGATTTTGGAAGAAATGAAGTAATGCCAAACAGTTCATAG AATAATGGGAAATGTGGTGTGGTNGCCGTCTATAGATTTTGGAAGAAATG AAGTAATGCCAAACAGTTCATAGAATAATGGGAAATTAGCCGTGGCGTTT CCTGCATTAGAGAATTGTAATGCTTTTAAAGTCACTTACTATCCTACTAT ATTTTCTCTACTGCCAGTGCTTCGGAATCATCGCTGGTCAAATGAAGATC TTTTGACAATTGTGAAATGTTTGTTGACTGAAGGTGTCAAATACGCAAAG CTCATTTGTCATGGTTTTATCATTTTCAGAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040735XLOC_040735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064966-exon-scaffold_427-1575043694:317610..317766TCONS_00064966-exon-scaffold_427-1575043694:317610..317766Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:316910..316979TCONS_00064966-exon-scaffold_427-1575043694:316910..316979Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:316314..316470TCONS_00064966-exon-scaffold_427-1575043694:316314..316470Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:316017..316234TCONS_00064966-exon-scaffold_427-1575043694:316017..316234Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:315304..315409TCONS_00064966-exon-scaffold_427-1575043694:315304..315409Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:314222..314381TCONS_00064966-exon-scaffold_427-1575043694:314222..314381Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:309422..309607TCONS_00064966-exon-scaffold_427-1575043694:309422..309607Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:308678..308997TCONS_00064966-exon-scaffold_427-1575043694:308678..308997Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:307744..307901TCONS_00064966-exon-scaffold_427-1575043694:307744..307901Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:307248..307335TCONS_00064966-exon-scaffold_427-1575043694:307248..307335Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:305055..305081TCONS_00064966-exon-scaffold_427-1575043694:305055..305081Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1575043694:303731..303849TCONS_00064966-exon-scaffold_427-1575043694:303731..303849Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:317610..317766TCONS_00064966-exon-scaffold_427-1510915933:317610..317766Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:316910..316979TCONS_00064966-exon-scaffold_427-1510915933:316910..316979Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:316314..316470TCONS_00064966-exon-scaffold_427-1510915933:316314..316470Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:316017..316234TCONS_00064966-exon-scaffold_427-1510915933:316017..316234Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:315304..315409TCONS_00064966-exon-scaffold_427-1510915933:315304..315409Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:314222..314381TCONS_00064966-exon-scaffold_427-1510915933:314222..314381Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:309422..309607TCONS_00064966-exon-scaffold_427-1510915933:309422..309607Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:308678..308997TCONS_00064966-exon-scaffold_427-1510915933:308678..308997Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:307744..307901TCONS_00064966-exon-scaffold_427-1510915933:307744..307901Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:307248..307335TCONS_00064966-exon-scaffold_427-1510915933:307248..307335Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:305055..305081TCONS_00064966-exon-scaffold_427-1510915933:305055..305081Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1510915933:303731..303849TCONS_00064966-exon-scaffold_427-1510915933:303731..303849Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:317610..317766TCONS_00064966-exon-scaffold_427-1491911889:317610..317766Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:316910..316979TCONS_00064966-exon-scaffold_427-1491911889:316910..316979Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:316314..316470TCONS_00064966-exon-scaffold_427-1491911889:316314..316470Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:316017..316234TCONS_00064966-exon-scaffold_427-1491911889:316017..316234Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:315304..315409TCONS_00064966-exon-scaffold_427-1491911889:315304..315409Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:314222..314381TCONS_00064966-exon-scaffold_427-1491911889:314222..314381Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:309422..309607TCONS_00064966-exon-scaffold_427-1491911889:309422..309607Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:308678..308997TCONS_00064966-exon-scaffold_427-1491911889:308678..308997Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:307744..307901TCONS_00064966-exon-scaffold_427-1491911889:307744..307901Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:307248..307335TCONS_00064966-exon-scaffold_427-1491911889:307248..307335Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:305055..305081TCONS_00064966-exon-scaffold_427-1491911889:305055..305081Clytia hemisphaericaexon
TCONS_00064966-exon-scaffold_427-1491911889:303731..303849TCONS_00064966-exon-scaffold_427-1491911889:303731..303849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:303731..317766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.913765 0.666454 0 0.130675 3.14838 3.77501 3.21643 3.96893 1.91826 1.97159 1.89128 2.38024 2.10552 3.34099 2.60706 3.68189 2.15472 3.53268 1.69993 2.59568 2.45337 0.590515 0.478566 1.85487 4.40795 3.52792 0.893301 0.610793 1.60975 1.94836
Blast
BLAST of TCONS_00064966 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.497e-30
Identity = 85/292 (29.11%), Postives = 150/292 (51.37%), Query Frame = 2
Query:   41 IEKTLLQSALKAYPKVHDALYSYSN--DLENKDVTMYRLLQDNTQLEIRHWFGWQSNNSLAIEDENTLSELPHFSNPFLSERYAVDVKLSYDYYLQQARPMHAFLVYMKNRTHTSES----IDAVTSSVCRLAIENYDSAIISTSCILFMELIEGPYQLLKVDVKAAVLISKY----WNKRVSFEKKTNAQDVKTLLIDLLLAKKSRENLITLVSHLEDCIEVAIHENKEIDRFSFEAICHWKIAIQFCRLHQLPLTTCFVKSCCQTDNWLPLFLFIQLYQIPPTQILEVME 886
            ++  LL+ AL  YPK+  AL+       +   D+T+Y L+Q  +  +    FGWQS N+LAI D    S LPHFS+P L  +YA+  +L++ YYL   RP  AF  ++      S++    I  V +    + + ++    I  +C+ F+EL+      L+VD+K A +I  Y     + + SF +++ A+ +  L      A   +     L+  LE+    +I + +EI R S E+   W + +QFCRLH + L+  +++ C + ++WL   +  QL+   P ++  +++
Sbjct: 1111 VDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITIYHLIQSLSPFDPSRLFGWQSANTLAIGD--AWSHLPHFSSPDLVNKYAIVERLNFAYYLHNGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYVIGLSSFHIPSIGAACVCFLELLGLDSLKLRVDMKVANIILSYKCRNEDAQYSFIRESVAEKLSKL------ADGEKTTTEELLVLLEEGTWNSIQQ-QEIKRLSSESSSQWALVVQFCRLHNMKLSISYLRECAKANDWLQFIIHSQLHNYHPAEVKSLIQ 1393          
The following BLAST results are available for this feature:
BLAST of TCONS_00064966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS2.497e-3029.11Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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