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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064961 ID=TCONS_00064961|Name=TCONS_00064961|organism=Clytia hemisphaerica|type=transcript|length=1568bpRun BLAST on NCBI transcript from alignment at scaffold_427:286664..303058- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064961 ID=TCONS_00064961|Name=TCONS_00064961|organism=Clytia hemisphaerica|type=transcript|length=16395bp|location=Sequence derived from alignment at scaffold_427:286664..303058- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064961 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 8.252e-30 Identity = 116/438 (26.48%), Postives = 206/438 (47.03%), Query Frame = 1
Query: 244 ILYPTSVQFSVQRLCTTNIESFDQEVYALYERLLDSGTFDESYSFAKLHSLPESNITLQKLRHELKLLRNKECWVDLESRCNFWRYAHRTFTEMDCLPELSAQFFEEQSLPSTHEML---SFEERVQLLKLSIRWLKCCQNVDVHKVSQLERTIWLYKI--KGVKQIQQTGQPLPTIILDEWKSDTIFSFQGNIDRKCSDVSYVKNLPVTELVQNEEMDRLFVNEKESLENSGEFVLKDVKEEKAFDWLVGNLLDDLHITEARKVTNYFQKTTTDLEIVLTAIQLAQGQIAVERCSDTIKSILAGTTSRHISVSGILERSGSFSRPESLTKHIRTSGASDVMVDFVFI---EEVQNALEKLTLRVTHGKRCCQQVLICFKIANILSRSYEEIVSDDRMNVLKSVFESPFDQRRQLAKQFIKAFDLSIDEVSTFIADTV 1533
IL TS+ + + + +IE+ E ++ ERL G F + A+L LP N+ ++++ E++ L++ E W ++R +FW+ H F + + ++ FF Q+ + S EER LL L+ WL V + K+ +LE+ IWL +I + + Q+ +P + S + + D S+ S+ K + L ++ ++ + KE+ EN D KE+++ ++L+G LLDD + EA +V YF D+ +VL LA G+ ++E I ++L + +LE P+ + + ++ + D FV + EV LE LT + HGK C+QVL + +A L SY ++ + D +L+ + S R + A+ FI L D V+ +A+ V
Sbjct: 1648 ILKDTSIAINHTIITSYSIENLQHECRSILERLQTDGQFALARRVAELAELPVDNLVIKEITQEMQTLKHIEQWSLKQARIDFWKKCHENFKKNSISSKAASSFFSTQAHVACEHPTGWSSMEERHLLLTLAGHWLAQEDVVPLDKLEELEKQIWLCRITQHTLGRNQEETEP-------RFSRQISTSGELSFDSLASEFSFSK---LAALNTSKYLELNSLPSKETCENR-----LDWKEQESLNFLIGRLLDDGCVHEASRVCRYFHFYNPDVALVLHCRALASGEASMEDLHPEIHALLQS--------AELLEEEA----PDIPLRRVHSTSSLDSQ-KFVTVPSSNEVVTNLEVLTSKCLHGKNYCRQVLCLYDLAKELGCSYTDVAAQDGEAMLRKILASQQPDRCKRAQAFISTQGLKPDTVAELVAEEV 2057 The following BLAST results are available for this feature:
BLAST of TCONS_00064961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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