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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064959 ID=TCONS_00064959|Name=TCONS_00064959|organism=Clytia hemisphaerica|type=transcript|length=2409bpRun BLAST on NCBI protein sequence of TCONS_00064959-protein >TCONS_00064959-protein ID=TCONS_00064959-protein|Name=TCONS_00064959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp MEDIFSAAREGNVKFVRTFLENIENDLNEGDDHGFTPLHWACREGQMVVFRun BLAST on NCBI transcript from alignment at scaffold_427:255988..265321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064959 ID=TCONS_00064959|Name=TCONS_00064959|organism=Clytia hemisphaerica|type=transcript|length=9334bp|location=Sequence derived from alignment at scaffold_427:255988..265321- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:255988..265321- >TCONS_00064959 ID=TCONS_00064959|Name=TCONS_00064959|organism=Clytia hemisphaerica|type=CDS|length=17472bp|location=Sequence derived from alignment at scaffold_427:255988..265321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064959 vs. Swiss-Prot (Human)
Match: ILK (Integrin-linked protein kinase OS=Homo sapiens GN=ILK PE=1 SV=2) HSP 1 Score: 514.227 bits (1323), Expect = 1.717e-174 Identity = 244/450 (54.22%), Postives = 328/450 (72.89%), Query Frame = 1
Query: 124 MEDIFSAAREGNVKFVRTFLENIENDLNEGDDHGFTPLHWACREGQMVVFEMLMARGARHSARNDGGDTPLHLAAAHGNKDIVIKLLQHKANVNLMNEHGNTPLHYACFWNMEGIAVELVNKGAHVSQCNRYDETPLDKATQFVKNLLRDKAKQGGQKLERKPFEEP--KGLQNSNYDYSTLRGGSTGIDINEIHLMERISESVSGELFKGVWNNAPIVAKKLKIYGIHKRLDLHFNEEYPRLRIFSHPNILPVINAVTK--QPNLMVISQFMPYGSLYDVLHEGSGIMLDQAQIIKFAFDIAKGMAYFHSLEPLIQKYHLNSFHIMVDEDLTARISMPDVRYSFQDTTKVQAPNWMSPEMLRLNPASVEQRSADMWSFAIVMWELATREVPYSSLSPMECGMKIATEGCRPPLQPGMPPQLSKLISLCWNADPTKRPRFDQIMPILQKM 1461
M+DIF+ REGN VR +L+N ENDLN+GDDHGF+PLHWACREG+ V EML+ RGAR + N G DTPLHLAA+HG++DIV KLLQ+KA++N +NEHGN PLHYACFW + +A +LV GA VS CN+Y E P+DKA ++ LLR++A++ GQ L R P+++ KG + TL S GID +++ + +++E+ SGEL+KG W IV K LK+ R FNEE PRLRIFSHPN+LPV+ A P+ +I+ +MPYGSLY+VLHEG+ ++DQ+Q +KFA D+A+GMA+ H+LEPLI ++ LNS +M+DED+TARISM DV++SFQ ++ AP W++PE L+ P +RSADMWSFA+++WEL TREVP++ LS ME GMK+A EG RP + PG+ P + KL+ +C N DP KRP+FD I+PIL+KM
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHS-GIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449 The following BLAST results are available for this feature:
BLAST of TCONS_00064959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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