TCONS_00064958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064958
Unique NameTCONS_00064958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064958 ID=TCONS_00064958|Name=TCONS_00064958|organism=Clytia hemisphaerica|type=transcript|length=733bp
TAATCTTCAATGGGTAGACAGCTTATCAGGGGGTAATGATATCATCTTCT
TAGATGTAGTAATTAcgtaaacaaaaacaacaacaatgatTGAGCAGTAT
AAAAGGGGCGATCAATATTCTTCTGGCATCACTTCTCATCGTCTCTTCTC
TCCATTAACATCATTGATAAGTAAAATTTTAAGTATTCATTCACTACTTC
ATCAAACACATTGTGGTGTGGTTTTCATTTGTCACAAGAAACAAGTTGCA
AGAAGAACCATTCAATCTTTCTTTTCAAACCTCGTGAAGAAAAATGTTTC
GAACCAAAGGACTTTGCTTGTTGGCTTTCATGGTGATACTTGTGGCGCTA
TCGCATGTAGATGCACGACCTTCCAAATGCGTGACCAACTGCAGAATCAA
TTTGGACCAATGTTTCACTATTGCGAGAGGATTCTCAGAAAAGTCCATCT
GTTTCGAGGCGAAGAAGATCTGCAAAAATAAATGCAAATTGATATCAAAG
ATTGGCAAATTATTGCGAGCAAAGAAAATCTAATTTATCTTTATAGTAAA
GCGTCGTCGTGTTCTGTTTCAACCAAAGCTATTTATCTTCCTGtaatttt
atttgtattttattcattCTGTAAATAAAGAAGCAgattattttataaat
attgtaaaagaaaaatttgtatttattcaatttttatattttttagaatt
tatcgaataaattttcaaaagtgaaaTCGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_427:255988..257010-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064958 ID=TCONS_00064958|Name=TCONS_00064958|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at scaffold_427:255988..257010- (Clytia hemisphaerica)
TAATCTTCAATGGGTAGACAGCTTATCAGGGGGTAATGATATCATCTTCT
TAGATGTAGTAATTACGTAAACAAAAACAACAACAATGATTGAGCAGTAT
AAAAGGGGCGATCAATATTCTTCTGGCATCACTTCTCATCGTCTCTTCTC
TCCATTAACATCATTGATAAGTAAAATTTTAAGTATTCATTCACTACTTC
ATCAAACACATTGTGGTGTGGTTTTCATTTGTCACAAGGTAATTACATAC
ATGCGTATTTCTATTGGAAATCATTATTCTCCAATCAAGTCCGTTTTCCT
TGTTTCGTGTTTGTTTCCATCTATATAAACACAACGTTCTCTCATCATCG
AATTATTTCTCTCTTTTTTCACTTCAGAAACAAGTTGCAAGAAGAACCAT
TCAATCTTTCTTTTCAAACCTCGTGAAGAAAAATGTTTCGAACCAAAGGT
AAGCATCATCGCTTGTTATTTCAATCGAAATCTTTTGTTTTTTTAGAGTG
GATAACAATCGTTTTTTTTTCAAAACTTACATTTCTATGGAAGTATTGTC
GTTTTTGGGGTTGGGCTTTATTCTTAGTGTTCCCCCACTTCTTTTGCAGG
ACTTTGCTTGTTGGCTTTCATGGTGATACTTGTGGCGCTATCGCATGTAG
ATGCACGACCTTCCAAATGCGTGACCAACTGCAGAATCAATTTGGACCAA
TGTTTCACTATTGCGAGAGGATTCTCAGAAAAGTCCATCTGTTTCGAGGC
GAAGAAGATCTGCAAAAATAAATGCAAATTGATATCAAAGATTGGCAAAT
TATTGCGAGCAAAGAAAATCTAATTTATCTTTATAGTAAAGCGTCGTCGT
GTTCTGTTTCAACCAAAGCTATTTATCTTCCTGTAATTTTATTTGTATTT
TATTCATTCTGTAAATAAAGAAGCAGATTATTTTATAAATATTGTAAAAG
AAAAATTTGTATTTATTCAATTTTTATATTTTTTAGAATTTATCGAATAA
ATTTTCAAAAGTGAAATCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040733XLOC_040733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064958-exon-scaffold_427-1575043694:256773..257010TCONS_00064958-exon-scaffold_427-1575043694:256773..257010Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1575043694:256563..256633TCONS_00064958-exon-scaffold_427-1575043694:256563..256633Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1575043694:255988..256411TCONS_00064958-exon-scaffold_427-1575043694:255988..256411Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1510915933:256773..257010TCONS_00064958-exon-scaffold_427-1510915933:256773..257010Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1510915933:256563..256633TCONS_00064958-exon-scaffold_427-1510915933:256563..256633Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1510915933:255988..256411TCONS_00064958-exon-scaffold_427-1510915933:255988..256411Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1491911889:256773..257010TCONS_00064958-exon-scaffold_427-1491911889:256773..257010Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1491911889:256563..256633TCONS_00064958-exon-scaffold_427-1491911889:256563..256633Clytia hemisphaericaexon
TCONS_00064958-exon-scaffold_427-1491911889:255988..256411TCONS_00064958-exon-scaffold_427-1491911889:255988..256411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:255988..257010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.152386	6.17826	2.1652	0.283206	0	0.365478	0.257579	0.298387	0.0731718	0.4428	0.288053	4.63521	2.739	0.542891	1.05289	2.30762	2.57885	5.64028	8.18676	1.93678	2.101	0.0891454	0.322571	0	0	0.192413	0.208723	0.404727	0.247801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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