TCONS_00064950 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064950
Unique Name	TCONS_00064950
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1851

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_427:58279..62014-

transcript sequence

>TCONS_00064950 ID=TCONS_00064950|Name=TCONS_00064950|organism=Clytia hemisphaerica|type=transcript|length=1851bp
GAGAGAGATAAAGAAGGGAAGATGGCATATTACAAACGTCTGCGTTACAT
GGGCACACCCGATTCTTCTCCTATTGTAGATGGAGGTATCCGTCAATCGC
GCAACTCACCCATCAACAACACTTCCACAACTCAAATCGTCGACTCGTCG
GACGACAATGGTGATGATGACGACGACATCGAATCTGCTGAACTTCCTGT
CGTTCAACCTAACGTCCGTGCTGAACGCTCGGCCTCCCCTTACCGCGATG
CCGCTCCCGTAGATATTAAACAAGGGTCTGACTCCAACGAAAAACTACAA
ATGAAAAATACGTCCAACGATATTGAGGTTGGAGACGTCAACGAATTCAT
ATTAAGACCAGCACCACAAGGCCAAACGATCAAATGTCGAATAACACGAG
ATAAAAAAGGTGTAGATAGACagatgtttccgacgtacttctTACATCTC
GAAAAGGATGATGGGAAAAAGGTATTTTTGTTAGCTGGTCGAAAACGTAA
GAAAAGCAAGACCTCCAACTATCTGATTGCGGTTGATCCGATTGATTTAT
CCAGAGCTGGTGAAAATTTCGTCGGCAAATTGAGGTCAAATCTAGTGGGC
ACCAAATTCACATGTTTTGATGGCGGTAGAAGCcctaaaaagggtggtgt
tcTCACAGACGGTTCAAATCTTCGAGAAGAACTATGTGCTATTATTTACG
ATACAAATGTGTTAGGTTTCAAAGGACCACGAAAAATGACAGTTGTTATT
CCTGGAATGGGTTTGGATCATCAACGTGTACCTATTCAACCACAAAACGA
AAACGAATGCTTACTAGAGAGACATAGAACGAAACACATGGAAAATCTGA
TTGCTTTACAAAACAAAACTCCTGTTTGGAATGATGATACACAGTCGTAC
GTTTTGAATTTTCATGGTCGCGTCACTCAAGCATCAGTGAAGAATTTTCA
AGTGGTGCACGAAAATGACCAGGATTATATCGTGATGCAGTTTGGACGAG
TTGCCGATGACGTGTTCACCATGGATTTCAACTACCCGCTATGCGCTCTT
CAAGCCTTCTCCATTGCATTAAGTAGTTTCGATGGAAAGTTAGCATGTGA
ATAACGAACAAGATAGGAAAGAAACTTTTGACTTCTTGAAATCAAATCAA
TCGATAGGTATAGTGTTAGATGTCCATCGGGGCACGACATCTTTGGAGAT
ATGAGGGAGGCTTCTGATTCAAGGACATGATCCATTTACCAAACAGGATT
TTTCAGTTCACTAACAGACTAACGCTTTACTGGTAAGGCTTAAGTTCGAG
TTTAATGATCGTCAAAATTCATGGAGGAACGTTTTTTTCCAAGTGAAATC
TTATCatagaacatttttttatttattttagataattTCTGCTTGACCTT
TCTTTCATTCTTTTGCGTGAAAAGTGCAGCATTTCAAAAGAACAGTCTAT
AAAAAGGTGTTCCTTTTTAATGAAACCCTAACTATTCAGTTTCTATAATC
GATTTGAAGGGTTTACAAAACAATGCGCACGAACTATTATTTCAAGAACT
CGTGTTTAGCTTTATTCTCTAGATATCTGATGGGGTAAGAtgaattttac
caatttttttagaaatttgatgttattttgtatatgtaattgtgtatttt
taaagtttagATTAGTCTGTCATTGTCAGAACGCGTGTTTCCCACAAGAA
ATAGGTCACGACGACAATCGGCTGTGCTAAAAagttttgcaaaatatttt
acgTTTTTATCCTTTAGCATCGAAATTGTTATTGTATTTACCAAacaatt
gtaaaattttaaatgaatgaTTTTAAAGATATATTACTATtatatgaaga
t

Run BLAST on NCBI

transcript from alignment at scaffold_427:58279..62014-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064950 ID=TCONS_00064950|Name=TCONS_00064950|organism=Clytia hemisphaerica|type=transcript|length=3736bp|location=Sequence derived from alignment at scaffold_427:58279..62014- (Clytia hemisphaerica)
GAGAGAGATAAAGAAGGGAAGATGGCATATTACAAACGTCTGCGTTACAT
GGGCACACCCGATTCTTCTCCTGTAAGCCTCACTTCTCTTATATACAATC
TTTTCCCTTCCATTTTTTTCATCAAGTGAATATTCTTCTTCTTTCCCGTT
TACAGATTGTAGATGGAGGTATCCGTCAATCGCGCAACTCACCCATCAAC
AACACTTCCACAACTCAAATCGTCGACTCGTCGGACGACAATGGTGATGA
TGACGACGACATCGAATCTGCTGAACTTCCTGTCGTTCAACCTAACGTCC
GTGCTGAACGCTCGGCCTCCCCTTACCGCGATGCCGCTCCCGTAGATATT
AAACAAGGGTCTGACTCCAACGAAAAAGTAATTGACTTTCCTTTCCTTTT
TCCCTCTCTTATTTAAGAATTTCATCAATCTCAAATCAGAGTTGGCTTAT
TATTTTCTTGATCGAACAAAAAAGTGAAATATTTTACTTTTGTATTGCAG
CTACAAATGAAAAATACGTCCAACGATATTGAGGTTGGAGACGTCAACGA
ATTCATATTAAGGTAAACTGATAAAATCAGTTTTGTGTTCTTTAGATTTT
AAGTGTTTTCGCCTACTTTGAGGTTTTAATAATTTGAAGTATACAGGTGT
CATCAAAGGTTTCTCTAACTTGTATCAAACCCACACAGGGGGGGGGGGCT
TTTTTTTATTATGGAAATAAATGTTTCTATATGGTGGTCGATTTCTCAAG
TTTACAGTTTCCAAGTTTCCATGAAACCAAACTGAGTAAGAGTTTTATCT
ACAATAAATTCATCAAACTAGAAATATAAAGTTTCCAGTGTTTTCTAGAT
TGATCTTTGATAACACAATTAGGAGAATATGAACTTGTTTTACTTTCTGA
TAATTAAAACATGCACCTCATCTTGTCTGTCCACCCTGTACAAGAAGGTT
ACTCTGAGCTTACAAACCCTTTTCTCATTATCTAAAATGAAATAGTAGAG
TTAGGTGCATGCTAAGAATATTTCTCCTGCTCTGCAATGTGAAGCCTTTC
CGTGGAAAGGAAAATTAATTCGCAAAATTATGCACGTGCAATTTAATCTG
AAGTTCAAGTAGAAGCTTTCTGCTGACTTTCTCTTAAATAATCAACTTGT
TTTTGTTTACAGACCAGCACCACAAGGCCAAACGATCAAATGTCGAATAA
CACGAGATAAAAAAGGTGTAGATAGACAGATGTTTCCGACGTACTTCTTA
CATCTCGAAAAGGATGATGGGAAAAAGGTACTTTATTTTACAATCAAATG
TGTATGTGCTGTAGTAGTGTCTACCATGGATGGTATTTTGTTGGTATTTT
CATCAAAATATTTACAGAAGTGAGAAGAGACCTTTTAATAATTTATGCAT
CTTTAGGTATTTTTGTTAGCTGGTCGAAAACGTAAGAAAAGCAAGACCTC
CAACTATCTGATTGCGGTTGATCCGATTGATTTATCCAGAGCTGGTGAAA
ATTTCGTCGGCAAATTGAGGTAAATCAATTGTTTCTTTTTCAAACTGCTG
TTTACACTTTCCTGTCGCGTGACATTAGTACTAATAGAGAGTATTTTTTA
TTCCGCTTATACAACTACTCAAGTTATCAACGCGAACCCTCGCTTTAATA
ACAACCCAATAACAAAATTTGACATGAGGTAATTTTCAAAAACCCTGCTT
TTCGCGTTGATAAATTGTCTCAATCATTTTCCCGCCTAAGTGTAAGCATA
GTCATTATAAAAAAATTTTTATAATGACTATGGTGTAAGTGAAATAAGGT
TTTTTCCGCTTTATCACAGGTCAAATCTAGTGGGCACCAAATTCACATGT
TTTGATGGCGGTAGAAGCCCTAAAAAGGGTGGTGTTCTCACAGACGGTTC
AAATCTTCGAGAAGAACTATGTGCTATTATTTACGTAAGCTTTTTATTTT
TTATTTTTAATGCTTGTAATTGATCTTATTTTACTTTTGGACTATTTTCT
TTTGTTTGAGGACATTTATCCTGGCCATAACTCGATGTAACCTTTCCATA
TCTTTTTTCAGGATACAAATGTGTTAGGTTTCAAAGGACCACGAAAAATG
ACAGTTGTTATTCCTGGAATGGGTTTGGATCATCAACGTGTACCTATTCA
ACCACAAAACGTAAGTCTATCTTTGTGAGGTGGATAACTTTGCCTAATAT
TATCCATTGAGGTATAACAACGAGTTTCTTTACATTTGCGCTTCTTTTTA
GGAAAACGAATGCTTACTAGAGAGACATAGAACGAAACACATGGAAAATC
TGATTGCTTTACAAAACAAAACTCCTGTTTGGAATGATGGTACGTACCTT
CTTTTGTTTTTATTTAAGGTGTGACTGGAGTATTATTCTCAACTTTGATA
ATGCCCTCCCGCATGATGTTTTTCTGTTTGTCTTTGACTAAAAAATATAC
CTTTCAAAAGGTCCAAATCTATCACCTATTTATCGCCCATTTTTGACTTC
TATCGGTAACATTTTGATACTTTAAGCATCACTTCGTCTCTTTTAGATAC
ACAGTCGTACGTTTTGAATTTTCATGGTCGCGTCACTCAAGCATCAGTGA
AGAATTTTCAAGTGGTGCACGAAAATGACCGTAAGTCTTTCTTTTTGTTG
GCCATACCTGATGAAACAGCAGTGCTTAACATAGGGAAGGTCTGCATATC
AAGCCAAGTCTAATTATGTGTTGACTAATTTTATGTGTTGACTATATGTA
TTCTTTCTAATGTATGCCAGTGTATGCAATAAGAAAAGTGCCAATCTCGT
GTTGCCTAGGTAGCCTATTGATTGTTTCATCGATTTAATTTTTTGTCACT
TGTAGAGGATTATATCGTGATGCAGTTTGGACGAGTTGCCGATGACGTGT
TCACCATGGATTTCAACTACCCGCTATGCGCTCTTCAAGCCTTCTCCATT
GCATTAAGTAGTTTCGATGGAAAGTTAGCATGTGAATAACGAACAAGATA
GGAAAGAAACTTTTGACTTCTTGAAATCAAATCAATCGATAGGTATAGTG
TTAGATGTCCATCGGGGCACGACATCTTTGGAGATATGAGGGAGGCTTCT
GATTCAAGGACATGATCCATTTACCAAACAGGATTTTTCAGTTCACTAAC
AGACTAACGCTTTACTGGTAAGGCTTAAGTTCGAGTTTAATGATCGTCAA
AATTCATGGAGGAACGTTTTTTTCCAAGTGAAATCTTATCATAGAACATT
TTTTTATTTATTTTAGATAATTTCTGCTTGACCTTTCTTTCATTCTTTTG
CGTGAAAAGTGCAGCATTTCAAAAGAACAGTCTATAAAAAGGTGTTCCTT
TTTAATGAAACCCTAACTATTCAGTTTCTATAATCGATTTGAAGGGTTTA
CAAAACAATGCGCACGAACTATTATTTCAAGAACTCGTGTTTAGCTTTAT
TCTCTAGATATCTGATGGGGTAAGATGAATTTTACCAATTTTTTTAGAAA
TTTGATGTTATTTTGTATATGTAATTGTGTATTTTTAAAGTTTAGATTAG
TCTGTCATTGTCAGAACGCGTGTTTCCCACAAGAAATAGGTCACGACGAC
AATCGGCTGTGCTAAAAAGTTTTGCAAAATATTTTACGTTTTTATCCTTT
AGCATCGAAATTGTTATTGTATTTACCAAACAATTGTAAAATTTTAAATG
AATGATTTTAAAGATATATTACTATTATATGAAGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040729	XLOC_040729	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_427	supercontig	scaffold_427:58279..62014 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.116524	0.130278	13.8231	13.5159	4.72947	9.41123	0	0	0	0	0.349566	1.21044	0	0	2.47154	1.65382	0	0.576714	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00064950 vs. Swiss-Prot (Human)
Match: TUB (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 3.341e-142
Identity = 193/262 (73.66%), Postives = 230/262 (87.79%), Query Frame = 1

Query:  319 DIEVGDVNEFILRPAPQGQTIKCRITRDKKGVDRQMFPTYFLHLEKDDGKKVFLLAGRKRKKSKTSNYLIAVDPIDLSRAGENFVGKLRSNLVGTKFTCFDGGRSPKKGGVLT-DGSNLREELCAIIYDTNVLGFKGPRKMTVVIPGMGLDHQRVPIQPQNENECLLERHRTKHMENLIALQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQVVHENDQDYIVMQFGRVADDVFTMDFNYPLCALQAFSIALSSFDGKLACE 1101
            D+EV D+ EF LRPAPQG TIKCRITRDKKG+DR M+PTYFLHL+++DGKKVFLLAGRKRKKSKTSNYLI+VDP DLSR G++++GKLRSNL+GTKFT +D G +P+K    T +   LR+EL A+ Y+TNVLGFKGPRKM+V++PGM + H+RV I+P+NE+E LL R + K+ E++I LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQ++H ND DYIVMQFGRVA+DVFTMD+NYPLCALQAF+IALSSFD KLACE
Sbjct:  245 DVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506

The following BLAST results are available for this feature:

BLAST of TCONS_00064950 vs. Swiss-Prot (Human)

BLAST of TCONS_00064950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TUB	3.341e-142	73.66	Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ...	[more]

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TCONS_00064950 (transcript) - C. hemisphaerica