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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064949 ID=TCONS_00064949|Name=TCONS_00064949|organism=Clytia hemisphaerica|type=transcript|length=1296bpRun BLAST on NCBI protein sequence of TCONS_00064949-protein >TCONS_00064949-protein ID=TCONS_00064949-protein|Name=TCONS_00064949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp MFCTCFRGATKRCSLSRPSRYWKRQEVLNAVARYCSSNHELPRSTELVPPRun BLAST on NCBI transcript from alignment at scaffold_427:48608..56183- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064949 ID=TCONS_00064949|Name=TCONS_00064949|organism=Clytia hemisphaerica|type=transcript|length=7576bp|location=Sequence derived from alignment at scaffold_427:48608..56183- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:48608..56183- >TCONS_00064949 ID=TCONS_00064949|Name=TCONS_00064949|organism=Clytia hemisphaerica|type=CDS|length=13320bp|location=Sequence derived from alignment at scaffold_427:48608..56183- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064949 vs. Swiss-Prot (Human)
Match: ZNT9 (Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 8.418e-51 Identity = 109/284 (38.38%), Postives = 161/284 (56.69%), Query Frame = 3
Query: 402 LRQIDYNVIYTKNTIISASRALSDYLLTVEDLDGMRKTAVRTAYNDSELPPDF-CYLKVDVEKRALERWGSIXXXXXXXXXXXXXXXXXXXYRKDLSALIGHLKKTVKDQTKQEDLNRILGTKEQREG----MLKGSAKVVLYAIASNFTVSIMKFGAYFSTGSAAMLSEAIHSMADLANQVLLGFGIWQSIKQPSLDHPYGWERSRYVYALISGCGIFFLGCGFSVYHGIAQIIEPAPLEHLHTAYAVLAASFVVEGATMATALKQVQRSANEAGVSIREYGM 1238
L++ +Y YT+N I+ RA++++ L DL+ +RK R+ + D+E F YL+ DVE ++LE WGS EAL ++ RK+ A I + ++ ++Q + LG + R KG KVV+ AI N KF A+ TGSA+M SEAIHS++D NQ LL GI +S++ P HPYG+ RY+ +LISG GIF +G G S YHG+ ++ P P+E L AY +LA S V EGAT+ A+ +++R+A G+S +Y M
Sbjct: 116 LKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTE---SFTVYLRSDVEAKSLEVWGS-----------PEALAREKKLRKE--AEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAVNELRRNARAKGMSFYKYVM 383 The following BLAST results are available for this feature:
BLAST of TCONS_00064949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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