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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064945 ID=TCONS_00064945|Name=TCONS_00064945|organism=Clytia hemisphaerica|type=transcript|length=1123bp
CTTTCCTACGCCCCTGAATAAGgTCATGTTGAACATCAAGAGTTTCTTGG
CATCGGAAAGCGAAAACATGGAAATGATACGATTATACTATCGCACCTTT
ATCGCCAAGCGGTTGAGCAAAAATTGGTGTCCCTTATTCTATGTGATTGC
AATTCACCACTTGGTACAATTCATCTTCAATGCTCAAATCAGCGATGAAA
CTCCAAAGGATGAGGCAGAAGAGATTTTAAAAGAACGTCAATCTATGTTG
AATGGTATTCTTACTCTTCAAGACACGGAATTGCGAGATGACGTGATTTA
TTACAAATTTTACGATATCCACTCCAAACAATCGTGCATCGAGAGATTCA
CCCAACTACCACCTTCAAGAGAAAAGTTTCTACGAGATCTAAAAAGTTGA
CCTGAAATCAGCCAATGAAAAGATAGGATGGAGGAACGTGAGAAAAAGTT
GAGGTATTCAATCTTATTATACTAATAGATAAGATTCTCGAAAATCCAAC
AAATGTATAGATTTTTGGATGACATTTACACCATACAAAAACCTTTGGGC
ATTgctttttttgttaattattttttttatcaaaccaaaAACTTAAAGAA
AATGCATTATCTGCCAATATGGCTAAGAAGTCTTTTGAGGAATTTATTGG
CTGTTGAATTTGACAGTTTTGAATTATATTCGCTGGAGGGAAACTTAAGT
TTTTTTTGAACCATGGCACGAGAAAGTTATTGACCCTGAAAAGGAGCTTT
ATTGATTATATGAACACATTGATGAAGAAAACAAGTTCAATCAATCGATC
AATGACATAATTATAAAGAACACAACATTCTGTTAACGACTGTTCTAATA
ACCGTTAATGAATATACACCGCATGGAAGGATGATGGTGATTTTAATGAA
GAAAACGTGCACAAACAATAGAATAGTAatgagttccttataaacagaTA
CAATTGATGAGAAAACACGTCCTTGGGGGCTTTAACCGGAACCTGATATT
GTATTATCTACTTTTACCAGAATGTAATTATCAGAAGAAAGATATGGTGA
AAAGATGATATTAATTCAGGCTGACTTTTCTACGTTTCCTCGTTTCCATT
TGACTCGAGAAAAAACAAACCCT Run BLAST on NCBI transcript from alignment at scaffold_427:466873..474894+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064945 ID=TCONS_00064945|Name=TCONS_00064945|organism=Clytia hemisphaerica|type=transcript|length=8022bp|location=Sequence derived from alignment at scaffold_427:466873..474894+ (Clytia hemisphaerica)
CTTTCCTACGCCCCTGAATAAGGTGAGTTGGTTGTGTTTTTAATTGATCA
GTAGTATTTTCAGCACATCTTATTCGTTTTCTTATATAAAGCGGCCTAAA
AAATTATGCTCGTGTATCAATCAATCAAGTAGACTAaattatagtctaag
acgaatcactatctaagaaaaaagcccaaagccgaagaaaattcgcaaac
gggtttttttaccgaaaagagtttacagtcggtagagttgccagtcttaa
ACTATACGATTTTGGCGCTAAAtacaaaaacagccaaaatcgTATGAATT
TGAGTTTCTGTATGCGAGGTCAGCGGTGTTCggtattcgaaaaaatcaaa
acaaaaagaaaactagCGGGAGAGAGAAACTGAGATTCCAAGAAataata
tctttattttggatAACCTCTCCCTTTTATtccctttatattttcttgga
aCTACACCTTCTTTTctaagaataacaaatttttatcaacagtcattttt
taaagactttaaataagtttgtaatttctttgcgACAAGAATATCTAGCT
AAACtttataaaattccttaaaaaacatgaaatcatACAAGtttgttggt
tttttttttgcctgaggatTATAATCCTTATTTAATTATTCcttttatca
aaaaactttcttgcttttatataaaaagtccattttaagaaaataaaaag
ttctagTATCTTCTCCCCACCACCATTGCTCAAAGACAAAAGCAAACaga
taaaaattattaaaaggtATAAATGCTTGCAATTTGTGTCTTTCCTGTTG
ATAAAAAACACAGTGGATGAAAATTCTCATGAATCTAAAAGTATCCTGAG
AAATGAGGGTATAAGAATTTCCTtgggaaaaaaactttcaactgaACACA
TTATCATATCATTTATACCAACCACTTGTTTTAACTTATCTGTTGGTTTG
TATAGAGAATGGGCTGGGTCAGTAATGTTGGCACCTTTTTTTCCTATATC
TAAGCTCAATCAGGTTATTTACCGAACATCAAACAtcttcctcaaaaatc
aaagttcGGAAAATATTTGGAACATGTCGGTTACAGGGAAGTGCACCACT
CAGaaggatacacgtttttataagaacaaacttatataagaacataaggc
ttcagtggccaaaatgttaagaacaagttgagaacaatTTAAAGCTTTGA
GtctaaaacatccaatttcttaggaaaattaacaaaaatgcTCAGAAAAG
GGAGAAAATGGAGAACatgtaagaacatgttaagatcatttttaggccta
aagctcaaaaagttcAGAACATCCAAAGTCTTGAAGAatgttgaatgttt
ttataaaaaaacgtgtaatgcaAAAGGTTAACAATGTATTGCATAAGGTG
GTTGCTAgtgtttttgcacttttttaATAATCATTTTGATTGCTCGAAAA
CGATTTTGGACAATCGCCAAATGTCTCCTTTTGTTGGTTGAAAACCCAAT
TGCTCTTAAATTGTATTTGGTTTTTGTACTTAAATTTAGAACTACTTTCA
ATGATTTAGATACTGCAAGGTTATAGAGCTTTTTGTTTGACAAAtgaatt
taattgtttttgataGCTTTAACCACCAACAAAGTGGAATTTATTTCTGA
AATCAATTTAATTCTGAAGACAAAAATAACCGAATTTTGACCGCATATAG
TTTATAACATAAATTTGGGCACCTGGGTTAGTAATTAACTTTGAGGATGT
TTTGATTATTTGTTTTGTACACCTACAAAGAATTAGTTGAAAATTTTGGT
AATTGGTCGATTTTCTCTGCTGTAATTGCTCCGAGTTAAGCGACAAAAGT
AGTTACTTTTTAAATGAGAATTAAGTCGGTATTTGGTCGACAGCTGAGCA
CTGTTAATGTGACGATCAAAGAATCCCATTTCTATTCCACTCTTCTGTTC
AGGTTATATCCATTGCATCCAAACATAAAACAGTCAGCTCGTACGCAGCC
TCTTTCTTTCGCTGTTTAGTCCATGCGGAATCTTTTGATAAGGTATCGGT
AGAAAATGACGAACAATCGCTTGGTAACTAAATGttttaccgacgaattt
ttattCCCGACGAATATTTTTTACCTAATGATTTTTGGCATTCTTTCGCT
AAAAATTCAATATGCCGACGACATAAATCTTCGCCGGCAAAACTATTGGC
TGCTTACCCACGAATCTTTTcaccgatgaattttcaacaCCGATATGGTA
GTTTGCATTCGCTTCAAGCAGAATCACACTTCAGACCATACACTGTTTGC
AATCAAGCTATCAATGCAATGCCAATGATCAGttatttgacgtcactcgc
accTTTAGTAAACTAGTAACCCTCTTTTGGGTATCTTTAGACACAAGAAT
TTGATAATTGTTTTCGTAATCTCTAACCAAATTTGACTAAATTTCGATAG
AAGCACGAAGATAATTTTTATCTTAGTTACAAGGGTGATTTCACTCggaa
tattattttttctttgttaaggTCATGTTGAACATCAAGAGTTTCTTGGC
ATCGGAAAGCGAAAACATGGAAATGATACGATTATACTATCGCACCTTTA
TCGCCAAGCGGTTGAGGTAAGTGATGAACCTGCAAGCTAATAGAGTTTCT
TGTGCTAACTAGCATAACAGTTACTTCTCCTTTATTTTAAGGGACTAAAA
GAATGCCTTTAAAAAGGGGTGGTGTTTCTACGAAGGCTCTTTTCAAACCC
TGACATCTAAACCCTGAAAAAATTTATTGCTGTCATCGTGATCACAAATA
TCGCTAGTATTTGTATACACGCAAAAAAAGTAACCGAAATCATGCATCAC
GCTTGATTTGCTGCTAGGCTTTGGGCCATTGAGTTCAAAGCCTCGAAGGG
GCTGGAAAggaatttttaacctttttcaagcaagaAGGAGTGAAACCTTA
ATATTTGCACCACATTTAGAATggcggattgaatctagcattttctcatt
ttttcgtgcgacaatttttttcaaaatctggtgATTGATTTTAcgttcaa
tctggcgtttgtgtgaaaaccacgcgcgTCGTGACTTCATTTCCCACCCA
AGAGTTTCGGATTATCACCGTTTTATTGTTGAAAATTATTCCCAAGATAG
GTATTTCTCTCAATCTCCAGAATAAAAAGAAGAGGTTTTCCCGTCAGTAA
AATACAGGTTGTTGAGTAATATTAACGCAGTCAAAGTAGCTATTCACCTT
ATAAAAGACTGAGGAACATGAAATATGTTTTCATAGAAACCCGTACTTTT
ATACACTCTTTCGTTTAATTTAAGTTTTAGTCAGGTAGCTTACAATTGAA
TCTACGCACTTCTGTTTTCAGCAAAAATTGGTGTCCCTTATTCTATGTGA
TTGCAATTCACCACTTGGTACAATTCATCTTCAATGCTCAAATCAGCGAT
GAAACTCCAAAGGTAACACTTCTAGCAAGACACCTCGACATCTTTAATCC
TAAAAATTTACCAGTTTTGTTAAAGAATACTGTAGTGTACATGGTGTCCT
CCAGGTTTTTTCAGGTCCCCCATCTGGGGCCTAAAACTCCCATTTGGTCT
TCTCCCCCGCCTACCCTTTTTCCGGGGTACCCCCattggaagaatatttt
tgtgacCCAACGATTTGCTATATTTTGCATAATAActtaacaaaaataac
aatttcctGCAATGAACACAAATGCTGGAAATATAGACACATTTAATCAT
CTATTTGAAATATTGTATCTAACTTATGCAATTTCTACCCCCACTTCCCG
TAAAATATCCTGAAATCCCAttttagtagagggcattttgtaaaatcgct
cgactgttttgttagaagcacttgttatacatttttggaaagctaagggt
aggggaatcgaaattactatgtttccaattttttttcggacactttggtg
tgattttgggacaaatatgacggtctcaggcaaaaatcatagggttaaaa
attaatgaaaattttagctcgagaaaacggagacctgttgtatatttatg
gaaagctctcaaaaaattaggattagagatatattgcaagtataggtgat
ttcagtacctaactcgagatattgagcttcaaaaagcgcaaaaactggac
aaaatagctgtttctggctgaaaaacacggttttcaagggttaatatctc
gagttaggtacagaaatcacctatacttgcaatatatctctaatattaat
tttttgagagctttccaaaaatatacaacacgtctcttctttttttttct
cgagctaaaattttcattaatttttaaccctagggtatgatttttgcctg
aggccgtcatatttgtccgaaaatcacacgaAAGTGTCCGAAAagaaatt
ggaaacatagtaatttcgattcccctaccccttagctttccaaaaatgta
taacaagtgcttctaacaaaacagtcaagcgattccaaaaaatcgaacaa
aattccccctactattgcATTAGTCCCCCCATCAAGGTGAAAATATTCAC
TTCCCCTCCAGGACAAAAGTTGATTCCTCATTTTCCTGGGGGGGGGGTCC
CATGATAGTGCATAAATGAGGGAAGAGTTTATCAGATCTCAGTATCCCAG
TTAAATTGTGTCACTTTCTTgttagaaatttctttttaaaaatctgttcT
CTGGCTTCAAAGTTAACAAGGTTATCTTTAATGGAGATCaacttttggac
ctacctgaagggGGGGTCCTATAGATTAACCTTTGTATGTTCATTCGTCC
GTCCGTCCTTCCGTTAGTTGCAAGTTTTTATCGGAATCGGATCATtccat
ttttataatttttttatacagTGATGCATAATGGTAATGCTCAAATGTTC
CTGGAGCCAGATTTTTGAAAGAGACAAAATTTCCCAGTCGCCAAATCCTG
ATATGTGCCGAAAAAATTTCCTGGGATCTTATCTAAATTTTATCATTAGC
TTTTTCCGATCTTTTGTACAACGATGCATATTATTACTGCAAAAATGTGT
ATGAACATAGTATGAATGAATGAGGAATACCTCTACTAGCTCTAAAATCT
GAATTCCAATTTTTAGGATGAGGCAGAAGAGATTTTAAAAGAACGTCAAT
CTATGTTGAATGGTATTCTTACTCTTCAAGACACGGTATGTTGTATCTGG
TTGTATGTTCCTTTAAGTAATTTTGAGATCGTTTTATGGAAGATTCTTTT
TGTTGATTCTGTAGATTCGAGAAATTCATCCCGAACCGAGCAGAGCAATT
TGACGGAAACTTGCCCGAAAATATGTCATCATTGATAGCAAATATTTTAA
GAACTTCAAAAGAACTTTACTTTGAAATTCTGCGAGCGTTATTTTTAAAC
GACATTTATAAAACTcattaacctttcaaagccgcttacttttttgaaaa
aggccaaaaatttcatcatttttttctggaaattttttctttcaaaggca
atttctcgaccaggacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGAATcccaagtggtcaggagttatgaccaaaagactg
tgtatcggtaaaatggccttttcaaaacgtatatatacgtattctggctt
ctaagggttaagaTGCACCTTTCTTTTGGTCAAAtttatttgagaaattt
taagGGGGGATACATTATGGCCTTGTTGTCATACGACGGGTTAAAGATAc
tttaatgtcaaatattttgtttaaaccgtaatttattgaatatttaggat
aaaataagcattttaaactcaggcaactttttttaaagcctttgatagtt
ctgaaccgcccctaaaagcctaggttgaatagggttaaggaaaGAATAAG
CCCCTAGCAGACTCTACATTAGagttctttttaaaaaacttttccttcGA
CAGAAGCTTTCTGCACTAAGACCCTATATGAGATAACAACTTTCGGAAGT
ATCAATATAACAATatccaaatttgcgaaaaataaACTTCGACTTGTAAT
AAATATATGATTGTTGATAATAAATTAAGTAAGAGTTGATTAGATAATAT
TAGCACTCTTTTCCGATCAATGACGTCACTGCTTTGGGGTGGGGGTCAGT
AAATGATGATGTCGATCTTCAATTTTACATTGCACAAGTTTCCTCTAAAC
TAGAATATGACCAGGTCGGGTATCCCAAGTCATAGCCTTGATATCCATGt
tgtgaaattatttttttagcgCTTACCAGTTCGGCAAGTTGCATAAAATG
ACAGCGCTGCAAATTTCCGTAACGTTGCGATTTTTCGTGACGCTTCCACG
GGCTGCGTAACAGGTGCGTTGCTTTTCTACGCAATGCTTTCAATCGAAGC
CTGTGattgaaaattatgaataaccgagcatttttcattaaatcacaagc
aaaatcaggcaaaatcTCGCTCTTATGAACAAATTAGCGCCATTTTGAAT
AAAGTAGCCTTACTGCCAAGGATGATTGTGAAAAATTTCTTGGTAGGAAA
TTTAAATCCTAGGGTAAAGAATTTACTTTGGGAGTGGTCTACAAAATGCA
catgattttgttttgagactCCATTTGTCACCCTGCGAGCCCGTTCTTGG
TTCAAAAGCAAGCGTTGTCAAATTTGACAGCGGAAAAGCTGCGATATTTG
ACAACGCTGCGGAATTCGACAACGCTAAAGTTGCGGCATTTCGCAGCGCT
GTCATTCTATGCAATTTCCCGAACTTCTACGTACTTTGCCGAttcaagct
gaaaattttaCGACCATCTAGGTAAACCAAACTGTaaatagcaaaaataa
aaaggatAGAATACAGCTAGGATATCCAGGCTTGCCAAATCATTATCACA
TGAATTTTTACTTCAAGATCGATTTTCATTTCCGATAAAGTTTAATTCAG
GTCGATTTCTATCAATACTTTGAAGAGAAAAGAGATTGAAATGTTTTACT
GAtttatatttgatcattttcCCTAGGAATTGCGAGATGACGTGATTTAT
TACAAATTTTACGATATCCACTCCAAACAATCGTGCATCGAGAGATTCAC
CCAACTACCACCTTCAAGAGAAAAGTTTCTACGAGATCTAAAAAGTTGAC
CTGAAATCAGCCAATGAAAAGATAGGATGGAGGAACGTGAGAAAAAGTTG
AGGTATTCAATCTTATTATACTAATAGATAAGATTCTCGAAAATCCAACA
AATGTATAGATTTTTGGATGACATTTACACCATACAAAAACCTTTGGGCA
TTgctttttttgttaattattttttttatcaaaccaaaAACTTAAAGAAA
ATGCATTATCTGCCAATATGGCTAAGAAGTCTTTTGAGGAATTTATTGGC
TGTTGAATTTGACAGTTTTGAATTATATTCGCTGGAGGGAAACTTAAGTT
TTTTTTGAACCATGGCACGAGAAAGTTATTGACCCTGAAAAGGAGCTTTA
TTGATTATATGAACACATTGATGAAGAAAACAAGTTCAATCAATCGATCA
ATGACATAATTATAAAGAACACAACATTCTGTTAACGACTGTTCTAATAA
CCGTTAATGAATATACACCGCATGGAAGGATGATGGTGATTTTAATGAAG
AAAACGTGCACAAACAATAGAATAGTAatgagttccttataaacagaTAC
AATTGATGAGAAAACACGTCCTTGGGGGCTTTAACCGGAACCTGATATTG
TATTATCTACTTTTACCAGAATGTAATTATCAGAAGAAAGATATGGTGAA
AAGATGATATTAATTCAGGCTGACTTTTCTACGTTTCCTCGTTTCCATTT
GACTCGAGAAAAAACAAACCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064945-exon-scaffold_427-1491911889:466873..466894 | TCONS_00064945-exon-scaffold_427-1491911889:466873..466894 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1510915933:466873..466894 | TCONS_00064945-exon-scaffold_427-1510915933:466873..466894 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1575043694:466873..466894 | TCONS_00064945-exon-scaffold_427-1575043694:466873..466894 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1491911889:469394..469488 | TCONS_00064945-exon-scaffold_427-1491911889:469394..469488 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1510915933:469394..469488 | TCONS_00064945-exon-scaffold_427-1510915933:469394..469488 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1575043694:469394..469488 | TCONS_00064945-exon-scaffold_427-1575043694:469394..469488 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1491911889:470244..470334 | TCONS_00064945-exon-scaffold_427-1491911889:470244..470334 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1510915933:470244..470334 | TCONS_00064945-exon-scaffold_427-1510915933:470244..470334 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1575043694:470244..470334 | TCONS_00064945-exon-scaffold_427-1575043694:470244..470334 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1491911889:471989..472057 | TCONS_00064945-exon-scaffold_427-1491911889:471989..472057 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1510915933:471989..472057 | TCONS_00064945-exon-scaffold_427-1510915933:471989..472057 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1575043694:471989..472057 | TCONS_00064945-exon-scaffold_427-1575043694:471989..472057 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1491911889:474049..474894 | TCONS_00064945-exon-scaffold_427-1491911889:474049..474894 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1510915933:474049..474894 | TCONS_00064945-exon-scaffold_427-1510915933:474049..474894 | Clytia hemisphaerica | exon |
| TCONS_00064945-exon-scaffold_427-1575043694:474049..474894 | TCONS_00064945-exon-scaffold_427-1575043694:474049..474894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_427 | supercontig | scaffold_427:466873..474894 + |
Blast
The following BLAST results are available for this feature:
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