TCONS_00064943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064943
Unique NameTCONS_00064943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064943 ID=TCONS_00064943|Name=TCONS_00064943|organism=Clytia hemisphaerica|type=transcript|length=1610bp
cgacaaacaacaacaaacgaCAAACAACATTAAAACTTAAAAGatGAATC
AACTACTAAGGGACATCATTGTGCAAGCGATTGACAACAAAGCAACAGAA
CTTAAAGATATCAGCGACGAATTATGGAAAAACGCCGAAGTAGGTTTCGA
AGAAACAAACGCTAGGAAAGTGATAACCGAATTCCTTAGAAAAGAAGGGT
TCGCTGTTTCGGAGAAGTTGCCCGACGACAACCGATTAAAAACATCCTTT
GTTGCAAAGTATGGAAATCCGGATGGGCTGAAAGTTGGTCTTTGTTGCGA
GTACGATGCATTACCTTTTGGCGAAACAGAAGAAGGGGAGGTGAATTATG
AACATGCTTGTGGACATAATCTCATTGCTGAAGCGGGAATTGGAGCTGCA
TTAGGCTTGAAAGCTGTGTATGATGCGAGCAAACATATGAAAATGCAAAT
TATTGTTTACGGTACGCCCGGCGAAGAGAATGGAGGTGGAAAAGTCCTTA
TGATTAAAGAAGGACTTTTTGATGAAGCAGATATTTGTATCATGGCACAT
CCAGCACCTGCTGAAGTTGCAGGAGCTGTTACGCTGGCCAATATCAAGAT
GATGATTCAATTTAAAGgAGCACCATCTCATGCCACCCTGGCGCCCTGGT
TAGGTAAAAACGCGCTTGATGCATGTGTATCTTGTTATAACAATATTAGT
ATGTTGCGACAACAATGTGAGCCAATAAACCGGATTCATATCAATATTAC
GAGAGGCGGAGATGTCATTAATGTCATTCCCGATTTCGCGGAAATGAAAG
TTATGATCAGATGCCCAGACTTGGATAAGTGCGAAGAGATTCGTCAACAA
ATTATGAAGTGTGCGGAAGGAGCAGCTGCAGCGACAGGTTGCGACCCACC
GCATTTTGAAGATACAGGAAACGGTATCGACTctgtcaaaacaaacaaag
TATTGATTGATCTCTACAAAAAACATGCTGAAAGTTTCGGAAACGTATTT
CTCAGTGATGAAGAGGCCAGTGGGATGAATGGCTCAACCGATATGGGAAA
CGTCACACATAAAGTGCCTGGCTTTCACCCCGGTTTTCAGATTTATACAG
GTGAGGAACAGGCAGTAAACCACACGCACGGTTTCGTTAAGTGGGCTGGG
CACGAAGATAATCAGAAACCCACTTTGATAAATGCTAAATGCTTGGCATT
GACCGCTGTTGAGGTTGTGGCCAATCCAGATCTTTTTCAACAAGTGAAAG
ATGAATTCGAAGCTGctaagaaagataaaaaagtcAAGAAGGCAACAGAA
CTCTGGTGCACTCACTAACAAAGAAATCACTTTGATCAAGAAACGGCATA
TTTTCAATGAGAAATTTATTTTCACCAGTCCTCGTTCttgtttaatttaa
tttaacttAATTCATATTTATTACAGTGGTCCCTGGGGGAGACAATGGCT
GAGCTGCCTAAAAGTTAATTCGTTATTCCATGGCCAGCCACTTAAAATAT
CAGTTATTATTgctattattgttattattgttattaagACAATACAATTT
ATAAGCTAATCGTTGTAATGTATTTAATTGTGAACCGAAATATATCTTAC
TACAGTGgac
Run BLAST on NCBI

protein sequence of TCONS_00064943-protein

>TCONS_00064943-protein ID=TCONS_00064943-protein|Name=TCONS_00064943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MNQLLRDIIVQAIDNKATELKDISDELWKNAEVGFEETNARKVITEFLRK
EGFAVSEKLPDDNRLKTSFVAKYGNPDGLKVGLCCEYDALPFGETEEGEV
NYEHACGHNLIAEAGIGAALGLKAVYDASKHMKMQIIVYGTPGEENGGGK
VLMIKEGLFDEADICIMAHPAPAEVAGAVTLANIKMMIQFKGAPSHATLA
PWLGKNALDACVSCYNNISMLRQQCEPINRIHINITRGGDVINVIPDFAE
MKVMIRCPDLDKCEEIRQQIMKCAEGAAAATGCDPPHFEDTGNGIDSVKT
NKVLIDLYKKHAESFGNVFLSDEEASGMNGSTDMGNVTHKVPGFHPGFQI
YTGEEQAVNHTHGFVKWAGHEDNQKPTLINAKCLALTAVEVVANPDLFQQ
VKDEFEAAKKDKKVKKATELWCTH
Run BLAST on NCBI

transcript from alignment at scaffold_427:427132..431974+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064943 ID=TCONS_00064943|Name=TCONS_00064943|organism=Clytia hemisphaerica|type=transcript|length=4843bp|location=Sequence derived from alignment at scaffold_427:427132..431974+ (Clytia hemisphaerica)
cgacaaacaacaacaaacgaCAAACAACATTAAAACTTAAAAGGTAAGCA
GATAATCATAAAACATCATTGCTTTGCAAtcttagtaaataaataaactg
gTTTTAGTTGAAATATCAGGCGAAAATGTCCGTAATCCACTTCTTTAGTC
TCTATATCTATTACTTTAAGGGTAGAAACTTTAGTgggtagaaaattttg
aattttttgtgtttttggtcACTAATTCCTATATGCCAATGCTCAAAGCA
AAGTAATGGACATTCATGgcaaatggatgatgggtatgtgccgcaCTTAA
GGGTACCTCTTTTGGATTTcgaaagtcccgctaagggtcggaaaaatcag
aaaatcaaatttcagtcccacaaAAGGTgtaggagaaataggaaaatttc
aaatttttacccccaaaaagatcgaaatttggtcaaatttgtcccggtaa
gggtcgtaaaattcacaaaattgtccttggttttctcctttttagtcccg
gtaagggtcggcACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaccccccccccgggtgt
agGGTTGGTTAGTACACAGGTATTTGCTAAACGAGGGCCCGAAACTAACC
CTTACAAAGGACAATTTATCTAAGAGATAGGTACAACTTTACATTGACTT
ACGTTTGAAATTAAACGTGAAACCATGTCTGAttaaacgtcaaaaaaaga
tattcattTCCGGGCATTTCTGAATCTACTCATTATTgcatcttttttaa
atttcagatGAATCAACTACTAAGGGACATCATTGTGCAAGCGATTGACA
ACAAAGCAACAGAACTTAAAGATATCAGCGACGAATTATGGAAAAACGCC
GAAGTAGGTTTCGAAGAAACAAACGCTAGGAAAGTGATAACCGAATTCCT
TAGAAAAGAAGGGTTCGCTGTTTCGGAGAAGTTGCCCGACGACAACCGAT
TAAAAACATCCTTTGTTGCAAAGTATGGAAATCCGGATGGGCTGAAAGTT
GGTCTTTGTTGCGAGTACGATGCATTACCTTTTGGCGAAACAGAAGAAGG
GGAGGTGAATTATGAACATGCTTGTGGACATAATCTCATTGCTGAAGCGG
GAATTGGAGCTGCATTAGGTGAGgagtaatacaccttttcgaccgtagtt
gcGTGGGCacttttttgtccgctttatcccactaaaaccgtcccaatcct
tttttgacgtatttttctattgtctataggtgcgaaaaaaggactgtgGT
GGTTTTGGTGGGATAAAACGGGCAAAAAAATGCCCACGAgactacagtcg
aaaaggtgtatacaaTATTTCTTTTCTCATAACatcttaacctttccagc
gcgcaacattttcaTATCTTCAGCCCGTCTGCGCGCaacgttttttgatg
aaaatgcaatttttacgataaccgttataactttttgaaaaattaacttc
aGAAAAAAACCCTTATATATTTGGAAAGCCCTACCTTTCCCCTTTCTAAA
TATGTTTAACTGAGTACTCCAAACAATTTTGGACAGAAATTATGAAGCCA
GACAAAAGGTATATGAAAAAACAATGTcgcgaaaaagtcattttttggtg
caaaacttcaaaaaattatagagaactgaaaaattaataaaaacacttac
ttttttctttagaaggtTTCTTCATAGTTAGGTAATACAattccatactt
ttgaaaagccaaataaaactctaaaacactttTATAAACCCTTACTTTCA
TAGCTAACTTTCTGCCTCCTCCAGTTTCACAAAATCAGGCAACATAGCTT
GGTCTaccatttctatttttgaaaaatgttgcgtCATACCAAAACAGACC
CCGATTGTTTCTTATCGGAAATTTCACGCTGATTCCGATTTTTTAATCGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTAATCCGACCAAATATAA
AGGTCACCTTAAAaacgtatcagatacgtctttcggaacgtatggcgaac
gtatcagatacgtctttcgggGCCGAAAGGTTAAGAGAAAACCACGAAAC
CACAACGGCCCTTTATTTTTCTGTCGTATAGTCCCTTCTTTGAATCACTC
GAAAACGCCCATTGAGGAAATCGGTTTTACGGCATGACTGATAATAAGAG
TTCTGAATCCTGGGTCGAAGACTTCGGAGGTTTTTAGATAGTGGGACTTT
CTAAcattaaataaaagtaaactAATTTTCTCCTTTATTCCATAGGCTTG
AAAGCTGTGTATGATGCGAGCAAACATATGAAAATGCAAATTATTGTTTA
CGGTACGCCCGGCGAAGAGAATGGAGGTGGAAAAGTCCTTATGATTAAAG
AAGGACTTTTTGATGAAGCAGATATTTGTATCATGGCACATCCAGCACCT
GCTGAAGTTGCAGGAGCTGTTACGCTGGCCAATATCAAGATGATGATTCA
ATTTAAAGGTGAGTTTATACATTTGGCGAAATGGCTTTGTAGCTTCGCAA
GAAGGCGAAAAGTTAgtgtaaaaaatcaaattttttgttaCTCAGAAAAA
GTTTAGTGGTAAATTAAGTGGACATCACGTCACATCAAACCATTAGCCAG
AAATATTTTCCATGGGACTTCAAAACTGCTTCGAATAACTAAAAATTCCA
ATAAGTGAAGTTAATAATTGAATAATTGAAAAGGTTTTAGCTGAAATTGC
GTTAGAAAAACCACGCGAAACAGAAATcgtttcaaaataaatgaaaattt
cgaaTAGGTACATGTTCAGACAGTACGCGCAGTTTCTTCTAGCTATTaaa
atacccctgtctcacagccccggtgaaaNCAGTATGCGCAGTTTCTTCTA
GCTATTaaaatacccctgtctcacagccccggtgaaacttttccctacag
cggggataaaaattctattgttccaaggttaaaaaatccagtggggatgg
ttttggagtgcaatttctaaacaatgaaaattcgaatggaaatgaaatca
aagtcaatttatcagtggggctaaaattccagggtatttttcccaccagg
gacgaaatttttactaaattttccagtgggactgaggccccaacgggtct
gtgacacacgGGTGTATTAAAATACGACCATATTATTCTTCACTAACTAC
TGGTATTGAAAgtcaaatttttaacaaaataaatagttcttttattgttt
atctttttcaggAGCACCATCTCATGCCACCCTGGCGCCCTGGTTAGGTA
AAAACGCGCTTGATGCATGTGTATCTTGTTATAACAATATTAGTATGTTG
CGACAACAATGTGAGCCAATAAACCGGATTCATATCAATATTACGAGAGG
CGGAGATGTCATTAATGTCATTCCCGATTTCGCGGAAATGAAAGTTATGA
TCAGATGCCCAGACTTGGATAAGTGCGAAGAGATTCGTCAACAAATTATG
AAGTGTGCGGAAGGAGCAGCTGCAGCGACAGgtataaactaaaataaatG
CTCAGTATCATTTTATCCTCGCAAACTCGTCCTTTTAACTTTGACAGTTT
CCCAGCTTTTTACCAAGAAaagtatcaaaaataaaatgcttTCTTACATT
ATTTTCTTCTTACAATTAACGGTCCCTAAAGCATCCACGTAAACAAggtt
gaaaaaattctaaaaatctaATCAGTAGCAAAATGGATTGAGTCAGAGGT
CAGAAGAAACAAAAtattctgaaaagaaaaaaaagtactACTTCAATCTT
GGTTATATCATAAGTGAATTGATATTTTAAGttgatattaaaaacatttg
aattattttatgaTAATGCACATTTTTAAGCTAAACCAAAATATATCTTT
TCACATATATATTCACACAGGTTGCGACCCACCGCATTTTGAAGATACAG
GAAACGGTATCGACTctgtcaaaacaaacaaagTATTGATTGATCTCTAC
AAAAAACATGCTGAAAGTTTCGGAAACGTATTTCTCAGTGATGAAGAGGC
CAGTGGGATGAATGGCTCAACCGATATGGGAAACGTCACACATAAAGTGC
CTGGCTTTCACCCCGGTTTTCAGATTTATACAGGTGAGGAACAGGCAGTA
AACCACACGCACGGTTTCGTTAAGTGGGCTGGGCACGAAGATAATCAGAA
ACCCACTTTGATAAATGCTAAATGCTTGGCATTGACCGCTGTTGAGGTTG
TGGCCAATCCAGATCTTTTTCAACAAGTGAAAGATGAATTCGAAGCTGct
aagaaagataaaaaagtcAAGAAGGCAACAGAACTCTGGTGCACTCACTA
ACAAAGAAATCACTTTGATCAAGAAACGGCATATTTTCAATGAGAAATTT
ATTTTCACCAGTCCTCGTTCttgtttaatttaatttaacttAATTCATAT
TTATTACAGTGGTCCCTGGGGGAGACAATGGCTGAGCTGCCTAAAAGTTA
ATTCGTTATTCCATGGCCAGCCACTTAAAATATCAGTTATTATTgctatt
attgttattattgttattaagACAATACAATTTATAAGCTAATCGTTGTA
ATGTATTTAATTGTGAACCGAAATATATCTTACTACAGTGgac

Coding sequence (CDS) from alignment at scaffold_427:427132..431974+

>TCONS_00064943 ID=TCONS_00064943|Name=TCONS_00064943|organism=Clytia hemisphaerica|type=CDS|length=5100bp|location=Sequence derived from alignment at scaffold_427:427132..431974+ (Clytia hemisphaerica)
atGAATCAACTACTAAGGGACATCATTGTGCAAGCGATTGACAACAAAGC
AACAGAACTTAAAGATATCAGCGACGAATTATGGAAAAACGCCGAAGTAG
GTTTCGAAGAAACAAACGCTAGGAAAGTGATAACCGAATTCCTTAGAAAA
GAAGGGTTCGCTGTTTCGGAGAAGTTGCCCGACGACAACCGATTAAAAAC
ATCCTTTGTTGCAAAGTATGGAAATCCGGATGGGCTGAAAGTTGGTCTTT
GTTGCGAGTACGATGCATTACCTTTTGGCGAAACAGAAGAAGGGGAGGTG
AATTATGAACATGCTTGTGGACATAATCTCATTGCTGAAGCGGGAATTGG
AGCTGCATTAGGCTTGAAAGCTGTGTATGATGCGAGCAAACATATGAAAA
TGCAAATTATTGTTTACGGTACGCCCGGCGAAGAGAATGGAGGTGGAAAA
GTCCTTATGATTAAAGAAGGACTTTTTGATGAAGCAGATATTTGTATCAT
GGCACATCCAGCACCTGCTGAAGTTGCAGGAGCTGTTACGCTGGCCAATA
TCAAGATGATGATTCAATTTAAAGgAGCACCATCTCATGCCACCCTGGCG
CCCTGGTTAGGTAAAAACGCGCTTGATGCATGTGTATCTTGTTATAACAA
TATTAGTATGTTGCGACAACAATGTGAGCCAATAAACCGGATTCATATCA
ATATTACGAGAGGCGGAGATGTCATTAATGTCATTCCCGATTTCGCGGAA
ATGAAAGTTATGATCAGATGCCCAGACTTGGATAAGTGCGAAGAGATTCG
TCAACAAATTATGAAGTGTGCGGAAGGAGCAGCTGCAGCGACAGGTTGCG
ACCCACCGCATTTTGAAGATACAGGAAACGGTATCGACTctgtcaaaaca
aacaaagTATTGATTGATCTCTACAAAAAACATGCTGAAAGTTTCGGAAA
CGTATTTCTCAGTGATGAAGAGGCCAGTGGGATGAATGGCTCAACCGATA
TGGGAAACGTCACACATAAAGTGCCTGGCTTTCACCCCGGTTTTCAGATT
TATACAGGTGAGGAACAGGCAGTAAACCACACGCACGGTTTCGTTAAGTG
GGCTGGGCACGAAGATAATCAGAAACCCACTTTGATAAATGCTAAATGCT
TGGCATTGACCGCTGTTGAGGTTGTGGCCAATCCAGATCTTTTTCAACAA
GTGAAAGATGAATTCGAAGCTGctaagaaagataaaaaagtcAAGAAGGC
AACAGAACTCTGGTGCACTCACTAAatGAATCAACTACTAAGGGACATCA
TTGTGCAAGCGATTGACAACAAAGCAACAGAACTTAAAGATATCAGCGAC
GAATTATGGAAAAACGCCGAAGTAGGTTTCGAAGAAACAAACGCTAGGAA
AGTGATAACCGAATTCCTTAGAAAAGAAGGGTTCGCTGTTTCGGAGAAGT
TGCCCGACGACAACCGATTAAAAACATCCTTTGTTGCAAAGTATGGAAAT
CCGGATGGGCTGAAAGTTGGTCTTTGTTGCGAGTACGATGCATTACCTTT
TGGCGAAACAGAAGAAGGGGAGGTGAATTATGAACATGCTTGTGGACATA
ATCTCATTGCTGAAGCGGGAATTGGAGCTGCATTAGGCTTGAAAGCTGTG
TATGATGCGAGCAAACATATGAAAATGCAAATTATTGTTTACGGTACGCC
CGGCGAAGAGAATGGAGGTGGAAAAGTCCTTATGATTAAAGAAGGACTTT
TTGATGAAGCAGATATTTGTATCATGGCACATCCAGCACCTGCTGAAGTT
GCAGGAGCTGTTACGCTGGCCAATATCAAGATGATGATTCAATTTAAAGg
AGCACCATCTCATGCCACCCTGGCGCCCTGGTTAGGTAAAAACGCGCTTG
ATGCATGTGTATCTTGTTATAACAATATTAGTATGTTGCGACAACAATGT
GAGCCAATAAACCGGATTCATATCAATATTACGAGAGGCGGAGATGTCAT
TAATGTCATTCCCGATTTCGCGGAAATGAAAGTTATGATCAGATGCCCAG
ACTTGGATAAGTGCGAAGAGATTCGTCAACAAATTATGAAGTGTGCGGAA
GGAGCAGCTGCAGCGACAGGTTGCGACCCACCGCATTTTGAAGATACAGG
AAACGGTATCGACTctgtcaaaacaaacaaagTATTGATTGATCTCTACA
AAAAACATGCTGAAAGTTTCGGAAACGTATTTCTCAGTGATGAAGAGGCC
AGTGGGATGAATGGCTCAACCGATATGGGAAACGTCACACATAAAGTGCC
TGGCTTTCACCCCGGTTTTCAGATTTATACAGGTGAGGAACAGGCAGTAA
ACCACACGCACGGTTTCGTTAAGTGGGCTGGGCACGAAGATAATCAGAAA
CCCACTTTGATAAATGCTAAATGCTTGGCATTGACCGCTGTTGAGGTTGT
GGCCAATCCAGATCTTTTTCAACAAGTGAAAGATGAATTCGAAGCTGcta
agaaagataaaaaagtcAAGAAGGCAACAGAACTCTGGTGCACTCACTAA
atGAATCAACTACTAAGGGACATCATTGTGCAAGCGATTGACAACAAAGC
AACAGAACTTAAAGATATCAGCGACGAATTATGGAAAAACGCCGAAGTAG
GTTTCGAAGAAACAAACGCTAGGAAAGTGATAACCGAATTCCTTAGAAAA
GAAGGGTTCGCTGTTTCGGAGAAGTTGCCCGACGACAACCGATTAAAAAC
ATCCTTTGTTGCAAAGTATGGAAATCCGGATGGGCTGAAAGTTGGTCTTT
GTTGCGAGTACGATGCATTACCTTTTGGCGAAACAGAAGAAGGGGAGGTG
AATTATGAACATGCTTGTGGACATAATCTCATTGCTGAAGCGGGAATTGG
AGCTGCATTAGGCTTGAAAGCTGTGTATGATGCGAGCAAACATATGAAAA
TGCAAATTATTGTTTACGGTACGCCCGGCGAAGAGAATGGAGGTGGAAAA
GTCCTTATGATTAAAGAAGGACTTTTTGATGAAGCAGATATTTGTATCAT
GGCACATCCAGCACCTGCTGAAGTTGCAGGAGCTGTTACGCTGGCCAATA
TCAAGATGATGATTCAATTTAAAGgAGCACCATCTCATGCCACCCTGGCG
CCCTGGTTAGGTAAAAACGCGCTTGATGCATGTGTATCTTGTTATAACAA
TATTAGTATGTTGCGACAACAATGTGAGCCAATAAACCGGATTCATATCA
ATATTACGAGAGGCGGAGATGTCATTAATGTCATTCCCGATTTCGCGGAA
ATGAAAGTTATGATCAGATGCCCAGACTTGGATAAGTGCGAAGAGATTCG
TCAACAAATTATGAAGTGTGCGGAAGGAGCAGCTGCAGCGACAGGTTGCG
ACCCACCGCATTTTGAAGATACAGGAAACGGTATCGACTctgtcaaaaca
aacaaagTATTGATTGATCTCTACAAAAAACATGCTGAAAGTTTCGGAAA
CGTATTTCTCAGTGATGAAGAGGCCAGTGGGATGAATGGCTCAACCGATA
TGGGAAACGTCACACATAAAGTGCCTGGCTTTCACCCCGGTTTTCAGATT
TATACAGGTGAGGAACAGGCAGTAAACCACACGCACGGTTTCGTTAAGTG
GGCTGGGCACGAAGATAATCAGAAACCCACTTTGATAAATGCTAAATGCT
TGGCATTGACCGCTGTTGAGGTTGTGGCCAATCCAGATCTTTTTCAACAA
GTGAAAGATGAATTCGAAGCTGctaagaaagataaaaaagtcAAGAAGGC
AACAGAACTCTGGTGCACTCACTAAatGAATCAACTACTAAGGGACATCA
TTGTGCAAGCGATTGACAACAAAGCAACAGAACTTAAAGATATCAGCGAC
GAATTATGGAAAAACGCCGAAGTAGGTTTCGAAGAAACAAACGCTAGGAA
AGTGATAACCGAATTCCTTAGAAAAGAAGGGTTCGCTGTTTCGGAGAAGT
TGCCCGACGACAACCGATTAAAAACATCCTTTGTTGCAAAGTATGGAAAT
CCGGATGGGCTGAAAGTTGGTCTTTGTTGCGAGTACGATGCATTACCTTT
TGGCGAAACAGAAGAAGGGGAGGTGAATTATGAACATGCTTGTGGACATA
ATCTCATTGCTGAAGCGGGAATTGGAGCTGCATTAGGCTTGAAAGCTGTG
TATGATGCGAGCAAACATATGAAAATGCAAATTATTGTTTACGGTACGCC
CGGCGAAGAGAATGGAGGTGGAAAAGTCCTTATGATTAAAGAAGGACTTT
TTGATGAAGCAGATATTTGTATCATGGCACATCCAGCACCTGCTGAAGTT
GCAGGAGCTGTTACGCTGGCCAATATCAAGATGATGATTCAATTTAAAGg
AGCACCATCTCATGCCACCCTGGCGCCCTGGTTAGGTAAAAACGCGCTTG
ATGCATGTGTATCTTGTTATAACAATATTAGTATGTTGCGACAACAATGT
GAGCCAATAAACCGGATTCATATCAATATTACGAGAGGCGGAGATGTCAT
TAATGTCATTCCCGATTTCGCGGAAATGAAAGTTATGATCAGATGCCCAG
ACTTGGATAAGTGCGAAGAGATTCGTCAACAAATTATGAAGTGTGCGGAA
GGAGCAGCTGCAGCGACAGGTTGCGACCCACCGCATTTTGAAGATACAGG
AAACGGTATCGACTctgtcaaaacaaacaaagTATTGATTGATCTCTACA
AAAAACATGCTGAAAGTTTCGGAAACGTATTTCTCAGTGATGAAGAGGCC
AGTGGGATGAATGGCTCAACCGATATGGGAAACGTCACACATAAAGTGCC
TGGCTTTCACCCCGGTTTTCAGATTTATACAGGTGAGGAACAGGCAGTAA
ACCACACGCACGGTTTCGTTAAGTGGGCTGGGCACGAAGATAATCAGAAA
CCCACTTTGATAAATGCTAAATGCTTGGCATTGACCGCTGTTGAGGTTGT
GGCCAATCCAGATCTTTTTCAACAAGTGAAAGATGAATTCGAAGCTGcta
agaaagataaaaaagtcAAGAAGGCAACAGAACTCTGGTGCACTCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040724XLOC_040724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064943-exon-scaffold_427-1491911889:427132..427174TCONS_00064943-exon-scaffold_427-1491911889:427132..427174Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1510915933:427132..427174TCONS_00064943-exon-scaffold_427-1510915933:427132..427174Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1575043694:427132..427174TCONS_00064943-exon-scaffold_427-1575043694:427132..427174Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1491911889:428039..428399TCONS_00064943-exon-scaffold_427-1491911889:428039..428399Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1510915933:428039..428399TCONS_00064943-exon-scaffold_427-1510915933:428039..428399Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1575043694:428039..428399TCONS_00064943-exon-scaffold_427-1575043694:428039..428399Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1491911889:429627..429839TCONS_00064943-exon-scaffold_427-1491911889:429627..429839Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1510915933:429627..429839TCONS_00064943-exon-scaffold_427-1510915933:429627..429839Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1575043694:429627..429839TCONS_00064943-exon-scaffold_427-1575043694:429627..429839Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1491911889:430593..430862TCONS_00064943-exon-scaffold_427-1491911889:430593..430862Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1510915933:430593..430862TCONS_00064943-exon-scaffold_427-1510915933:430593..430862Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1575043694:430593..430862TCONS_00064943-exon-scaffold_427-1575043694:430593..430862Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1491911889:431252..431974TCONS_00064943-exon-scaffold_427-1491911889:431252..431974Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1510915933:431252..431974TCONS_00064943-exon-scaffold_427-1510915933:431252..431974Clytia hemisphaericaexon
TCONS_00064943-exon-scaffold_427-1575043694:431252..431974TCONS_00064943-exon-scaffold_427-1575043694:431252..431974Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064943-proteinTCONS_00064943-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:427132..431974 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0253232	0.0246941	0.114689	0	0	0	0.0325569	0.0609588	4.24653	0.819399	13.0331	27.3046	29.6244	35.6101	10.0799	8.20941	1.44476	4.0528	7.67194	13.7746	0.171387	0.394098	0	0	0	0.0970598	0	0	0.0562135	0.0286363
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002933Peptidase_M20
IPR017144Pept_M20A_amidohydro_pred
IPR011650Peptidase_M20_dimer
IPR017439Amidohydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00064943 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 5.389e-67
Identity = 149/411 (36.25%), Postives = 220/411 (53.53%), Query Frame = 2 
Query:   50 QLLRDIIVQAIDNKATELKDISDELWKNAEVGFEETNARKVITEFLRKEGFAVSEKLPDDNRLKTSFVAKYGNPDG---------LKVGLCCEYDALPFGETEEGEVNYEHACGHNXXXXXXXXXXXXXXXVYDA--SKHMKMQIIVYGTPGEENGGGKVLMIKEGLFDEADICIMAHPAPAEVAGAVTLANIKMMIQFKGAPSHATLAPWLGKNALDACVSCYNNISMLRQQCEPINRIHINITRGGDVINVIPDFAEMKVMIRCPDLDKCEEIRQQIMKCAEGAAAATGCDPPHFEDTGNGID--SVKTNKVLIDLYKKHAESFGNVFLS-DEEASGMNGSTDMGNVTHKVPGFHPGFQIYTGEEQAVNHTHGFVKWAGHEDNQKPTLINAKCLALTAVEVVANPDLFQ 1240
            +LL+    + ID  A  L  +S  +W   E+ +EE +A +V+T F  +E  A S  +    +L T+F A++  P+          L +G  CEYDALP            HACGHNLIAE G  AALG++   +        ++++V GTP EE+GGGK+ +I+ G F   D+  MAHP+    A    +A   + +++ G  SH+   PW G NALDA V  YNN+S+ RQQ +P  R+H  I  GG   N+IP ++E+    R P + + + + ++   C   AA A+GC     E  G   D  +V  NK L   Y ++    G  F+S D   +G +GSTD GNV+  VPG HP F I +    A+NHT  + + AG ++ Q  TL  AK LA+TA++V+  P+L +
Sbjct:   21 ELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALP---------GIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCT---VEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGS---NALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLE 416
The following BLAST results are available for this feature:
BLAST of TCONS_00064943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D25.389e-6736.25Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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