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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064942 ID=TCONS_00064942|Name=TCONS_00064942|organism=Clytia hemisphaerica|type=transcript|length=1764bp
CACAGAtcgtattcatgcagtacgaaGATCCGTCCGCCGACCCACTTTCA
GAAGATCGCTTTCATATAGAGATGTTCTTCAGCCCAGGCGTCAAGACTCC
GGACACGAAAGAATTAGCGGAACAATTAGCGGACGAATCACAAGAAAATG
ATTATCACGGATCTTTCGAACTTGGTTGTTGTGGATCAAGCGATCGACTG
AACGTTCTCAAAAACATTGGCCTTGAACAAGCAAACAAACCAGGTGGAAG
TGAGATGCCAAGCACGTCACCGGTACGCATGTCTCTTCAGCCGATGTTGG
AAAGAGTTAGCTCTGGTATGGAATCTAAAAAGACGGTTTTTAGCACGAGT
TCGATGAGCGATACTGAATCTGTTTCATTGATTGGTGCTGACGTAATCGA
TACTCTGCCATCACTACATCCTTTGGTATGTTTACACAGCAAAGTCCGAC
AAAAATCCATGGACCATTTCCTTACAACTCTTATGGAGACGGAGTCTTCG
GGAGTGGAGCCTGAAGGTGCGGATATTAGAAAGATTAGCATGGCGCATGC
TAACACGAACACTTTGAGTGAGAAGTTATACCAAGTGAAAGAGCATTGAT
TTAAATCTCTCTCGTCATTGGATCTCTTCTGAATGTTGGATCAAGTGGTT
CCGACACGAACAAGGTCTAGACCCAGgaagcacacaacgttgtttcaacg
tttatctaacgttcacaacgtccatataacgtgagatgaacgttgaagca
acgttAAACACCAACGCAGAATTATGAAATGACTGAGTAAGCCCACTAAG
CTTTATAAAAACCCTGGAAGAAGGTTCTCAATCTCGGCCAACCATacaat
ctttgatcggagtttttttatttgtaaaactacTGAAAATCGTCTCGAGA
GAGAGAGAGCTATATCTACTTTTTCTTGACTAACTGCTCGAGGTAGCGTT
ATTTGACGTGTACTACTCACTGTCACTGACCtttttatatatccctggac
caagctatatccgccatctttgatcgaagtttttttaaattggtacccgt
aaagaagccattgcagtgttaaaaattaccgtctaacggcgctacatcat
caaaagttttcgagggaaagtagatctagcgctctcgatgcatttacacc
gctattgagtagtgccgctattagggtaccacttttcaaaaaactccgat
aaaaagatttttgcttggccgggattgaaaaacttggtccagggtatata
aaggtcagtgaaaCTACTTtaaaactctgatcaaagatagTGGACGTAGC
TTTGTCAAGGGTTTGAATAAATATCACTGGGTAAGTCTCACTATTGGAtg
aatgaaattgaattaaCATTTTGTGAGGAAAGGAAGTTTTCTGATTTACT
GTTTGCGAAGAAGAAGAGCGAAAATTTAGAATGGATACCTTTTTTTTAAT
GCTCAGTCTGAACGAAGGGAAGATGGAAGTTTTGAACTATTGTTGTTTAA
GCAATATGCAGGCGAggccaatttgatttgttgttttacagaCCCAGCTA
CCCAAACAAGAGGGTCGTTCGGTCggcgaaaaattaaaaacaaaagtagA
ATTTgcctataaaatctcctaaaaaggcagcaaagaCTACTAATTCTTGA
CAAAAatacgaaatagaaaataaaaaggttgaattcatggataaaacgaa
agatttaacaaaaaattctcaaaaccttggaaaaacaaccaaaattttgg
AGATTTGAGAGTCt Run BLAST on NCBI transcript from alignment at scaffold_427:415323..420787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064942 ID=TCONS_00064942|Name=TCONS_00064942|organism=Clytia hemisphaerica|type=transcript|length=5465bp|location=Sequence derived from alignment at scaffold_427:415323..420787+ (Clytia hemisphaerica)
CACAGAtcgtattcatgcagtacgaaGATCCGTCCGCCGACCCACTTTCA
GAAGATCGCTTTCATATAGAGATGTTCTTCAGGTATGATTCGTAACGATT
CCATTtcactccgaaacgaaatgaagccattctattggttaaaagtgacg
taaaacctGAATGTAACCAATCGAATGGCTTTATTTCATTTCGGAGTGAA
ACAGAATCGTTTCGTGTCGCTCCGGTATGGTTTACTTTACGGATTGCGAG
AGTTCACATTTGTATTGCAACGTTtctgagcaagaaaacggatcagttcc
gttccgatgaaaatagtggaacGAAACCGTATCGATCTGTTCTCTTTTta
acgtttcgaattttgacgttaaCACTtttttcggaaccgtttcgtttggG
AAGGATACGGAACCGTAAAGCCTGAACACGGTCTTAAAGACGTGCAAGAC
AGTTAAAGGTAATCTGAACTCTCTCATTACGAGACCCCATTCCCTGAGAG
AAATGATTTCTTTCCAACACGGAGATTTGATCCTCCACCAATACACATGC
AAGCATTCTTACTCAcgatttatttatattttattatctGGCATCCGATG
TACATCTTCTCTTTCGACACACTAAATCGGGAAAATTTTGACTTCCGACA
GAAATTCAGCCAGGTTTTCAGTGTTTACGCGACTGGGGATGTCGGCATAT
CAATGTTATTAGATTACCCTTTAATGAGAGCACTCCTCTAGAGCTCTATT
GTGGGCGATCGCAAATTCACCATTGGAGTATCAGATGAGATATTTGAATC
CGCCCTTGTTGTGAAGCGACAAGCCGAAGCATTTAACGCTGTCATCGAGA
caaaaggtccaatctcaaaattagtgtGTCAAAAAACTGAGTCAAGTTTG
CTTTTCTAACTTGAAAATTGTAAGATTTATCCTTTTCTTGTAGTGGAGAA
GGATCCTATCTACAAGAGAAAAGTGTCAATCTCTAAATTTTAACTTATAA
GCAAAGTAAAAAGAAAGTTCTTAGACACCTGTTCTGAGATTGGACCTTTT
GTCTCGACGGCAGCGTTATAAGCATGTGCCATCATTACGTACATCAACAC
GTTTAACACTTgtaaattttattaatttatttgatcTGTTTAATATTCAG
CCCAGGCGTCAAGACTCCGGACACGAAAGAATTAGCGGAACAATTAGCGG
ACGAATCACAAGAAAATGATTATCACGGATCTTTCGAACTTGGTTGTTGT
GGATCAAGCGATCGACTGAACGTTCTCAAAAACATTGGCCTTGAACAAGC
AAACAAACCAGGTGACTTTTGATGGCTTTTCTTTCTGACATGTTTCatta
taccttaagggaactaattttcgcgggaactagttttcgcggaactaatt
tttgcgggaactattTTGGGGAGCTGTTTTCAGTGTCTACTGCGAAAATA
GTTCCGCGAAATGCAATCTTTACTAAAAATCCTCTAAAACACTTAGGAGT
ATAAAAGAATTTCGGCAAAACGTGGGTGTCAATTGCGGAAATAGTTCTGC
AAAAAATGCGCCAATTTAGTACCCTCgtaccgcgaaattaagttccgcaa
aaattagttccttcAAGGCATTTAtgatgaaatcttttttttaatacgAT
TCGAAAAACACCAAGTATTCGTCCATTAGAGTATTaagtatttatttaag
tattcgTCCTTAGCTCTTAGTTTAAAAAGTTTAGTAAAAGTTTTGCTTAG
TCGCGCCTTGAGctgttttgaagattttatatCCTGACTTTTTTGTTCCA
AATTGCAACTTGCTTTACGAAATTGCAGCTTGCTTTACGAGATTGCAACT
TGCTTTACGATCATGGTATGTATACATATTgatatttttaggtttttgtt
aacttttttcagaatttaaagttatttcattggatttttcagtTTTGAGG
GACtcagtggcttccaggctatattcacagccttattggaacattttttc
aaacttttggatTGCGAGATCCTAAGGCCCTAACTGACCGTTCACTTTTT
TCAGCCCGGTAACCCGGAGGAAAACCTTTGGAAATATTCCAACAAAAAGT
TCAGGACGCGATATCTTATTACCAGGTTAGTCGGCTGTAGTAGACTGCAA
AAGTATTTTTGTATGACTTTCTTGACATGAAATGCTTATCATATGAGTGG
ACCCAGTATAGTGAGAAAGTATATTAAAATTGCACTACAAATTAGAcagt
ttcaaatatttttttggacaCGCATACACATATCAACATACACATACACA
CACACCGTTCTCGTTTGTAGTGATGATTAAAAAACCCGAACGTCGGTTCT
CGTTACCGACTTTATCGTCGGACGAGAATGACGTCATCGTTACTGGAGAc
gagaaaaaacaacaagataCAAAGAAGACGAGGTTTGACGAACAAACGAA
GAGACCTCCTTTGTTGCATTCCATGAGTTATACAAAACCTGACGAAAAGA
AATTGACAAAACAACGACGACTTAGTATGTGATCTCGAGTGCCTGATAAA
CAGGCAACAATTTAACACGAAAAAACAACTAAATTTGTGATGAATCTTTG
CAAATATTCCAGACAATAATTCAATTATATTGTATTACTGTTAGGTGCTT
AATCACGCCCCccttttgtttagtttttcgattttttccttttcataaat
tgttttaagtgcaacgactgcctcgttttgaaaccattaccaggGTGATT
ATATCCCTTAAAAGACTTCAAGACTTTTACagtggcaatattttcaaaac
gaggtaagcatatttcttgatgtcatttatgaaaatgtctatCACGATTC
ACGATAACAAATATAATCAAATTTCTTACGAAATAAGTGGCTTTACCGCA
AATGAAATATCCATATTAAAAATATAGAAACTTTGCGCTTTAATGTATTT
CCTTTGTCTCCCTTACGTGCAGGTGGAAGTGAGATGCCAAGCACGTCACC
GGTACGCATGTCTCTTCAGCCGATGTTGGAAAGAGTTAGCTCTGGTATGG
AATCTAAAAAGACGGTTTTTAGCACGAGTTCGATGAGCGATACTGAATCT
GTTTCATTGATTGGTAAGGTTTTTTATATATCTTATTTTtgtcaatacac
cttttcgacggTCGTCGCGGGGTCAGGCGGTCATtttctttaggtgcgaa
aaaaagactgtgACAGTTTTAGAGTGGTAAAACGGAAAAAAATACCCGCG
CGGCAAGTGGCGGCTACGGTCTAAAAGGTGTATAGATGATGTTTGTTTTA
TCCATTGtgtttacacgtttttcttataagaatattcaaaattttcggat
gctcttaacttttgagttttaagcttaaaatgtctttaaaatgttcttat
tcccccttttgtgagtattttttgtccatttccctaTTGGATGTACTaga
gtcctcaaagccttaaCATGATTTTAACccgttcttaacattttggccat
cgaagccttattttcctatatagtttgttcttataaaaaaacgtgtactc
agGTTCAAtatctaccttaagggaataaattaatgggagaataaattaat
gcggaaTTAATTAATGTGAAATTAATTAATGCGAATTTGGCCCTAAGTCG
CATTATTTAGTTCTGCAATTCTTAAAATTGGTCAATTCGCATTAATAAAT
TCCacaatttcaataattttgctGTGATTTTATCATTAATAAAGTTTAGA
ATGTGGCTCATTCGTATTAATTAATTTCGccaaacatgaaattttttttg
gtgtcattcgcattaatttattccgcatgaattttttcttattctcagcc
tgagcaattccttatttttcggaccattttcagcctcaagttccttataa
acgtgttccttataaaaaaacgtgcaataTTTTTCACACACACATATATA
TGCTATGTATTTCACACGTTTTCACGTTGCCGTTGTGGCTTCGGGAACTC
TCTAATAGGCTTGTTAAGCCTGACTAAATATGCAAGGAGTTCAAACCTCC
TGGTTCCGGTGATTTCAAGTGTATTTTATATTTAGGTGCTGACGTAATCG
ATACTCTGCCATCACTACATCCTTTGGTATGTTTACACAGCAAAGTCCGA
CAAAAATCCATGGACCATTTCCTTACAACTCTTATGGAGACGGAGTCTTC
GGGAGTGGAGCCTGAAGGTGCGGATATTAGAAAGATTAGCATGGCGCATG
CTAACACGAACACTTTGAGTGAGAAGTTATACCAAGTGAAAGAGCATTGA
TTTAAATCTCTCTCGTCATTGGATCTCTTCTGAATGTTGGATCAAGTGGT
TCCGACACGAACAAGGTCTAGACCCAGgaagcacacaacgttgtttcaac
gtttatctaacgttcacaacgtccatataacgtgagatgaacgttgaagc
aacgttAAACACCAACGCAGAATTATGAAATGACTGAGTAAGCCCACTAA
GCTTTATAAAAACCCTGGAAGAAGGTTCTCAATCTCGGCCAACCATacaa
tctttgatcggagtttttttatttgtaaaactacTGAAAATCGTCTCGAG
AGAGAGAGAGCTATATCTACTTTTTCTTGACTAACTGCTCGAGGTAGCGT
TATTTGACGTGTACTACTCACTGTCACTGACCtttttatatatccctgga
ccaagctatatccgccatctttgatcgaagtttttttaaattggtacccg
taaagaagccattgcagtgttaaaaattaccgtctaacggcgctacatca
tcaaaagttttcgagggaaagtagatctagcgctctcgatgcatttacac
cgctattgagtagtgccgctattagggtaccacttttcaaaaaactccga
taaaaagatttttgcttggccgggattgaaaaacttggtccagggtatat
aaaggtcagtgaaaCTACTTtaaaactctgatcaaagatagTGGACGTAG
CTTTGTCAAGGGTTTGAATAAATATCACTGGGTAAGTCTCACTATTGGAt
gaatgaaattgaattaaCATTTTGTGAGGAAAGGAAGTTTTCTGATTTAC
TGTTTGCGAAGAAGAAGAGCGAAAATTTAGAATGGATACCTTTTTTTTAA
TGCTCAGTCTGAACGAAGGGAAGATGGAAGTTTTGAACTATTGTTGTTTA
AGCAATATGCAGGCGAggccaatttgatttgttgttttacagaCCCAGCT
ACCCAAACAAGAGGGTCGTTCGGTCggcgaaaaattaaaaacaaaagtag
AATTTgcctataaaatctcctaaaaaggcagcaaagaCTACTAATTCTTG
ACAAAAatacgaaatagaaaataaaaaggttgaattcatggataaaacga
aagatttaacaaaaaattctcaaaaccttggaaaaacaaccaaaattttg
gAGATTTGAGAGTCt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064942-exon-scaffold_427-1491911889:415323..415404 | TCONS_00064942-exon-scaffold_427-1491911889:415323..415404 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1510915933:415323..415404 | TCONS_00064942-exon-scaffold_427-1510915933:415323..415404 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1575043694:415323..415404 | TCONS_00064942-exon-scaffold_427-1575043694:415323..415404 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1491911889:416473..416633 | TCONS_00064942-exon-scaffold_427-1491911889:416473..416633 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1510915933:416473..416633 | TCONS_00064942-exon-scaffold_427-1510915933:416473..416633 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1575043694:416473..416633 | TCONS_00064942-exon-scaffold_427-1575043694:416473..416633 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1491911889:418295..418435 | TCONS_00064942-exon-scaffold_427-1491911889:418295..418435 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1510915933:418295..418435 | TCONS_00064942-exon-scaffold_427-1510915933:418295..418435 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1575043694:418295..418435 | TCONS_00064942-exon-scaffold_427-1575043694:418295..418435 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1491911889:419408..420787 | TCONS_00064942-exon-scaffold_427-1491911889:419408..420787 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1510915933:419408..420787 | TCONS_00064942-exon-scaffold_427-1510915933:419408..420787 | Clytia hemisphaerica | exon |
| TCONS_00064942-exon-scaffold_427-1575043694:419408..420787 | TCONS_00064942-exon-scaffold_427-1575043694:419408..420787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_427 | supercontig | scaffold_427:415323..420787 + |
Blast
The following BLAST results are available for this feature:
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