|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064931 ID=TCONS_00064931|Name=TCONS_00064931|organism=Clytia hemisphaerica|type=transcript|length=4845bpRun BLAST on NCBI protein sequence of TCONS_00064931-protein >TCONS_00064931-protein ID=TCONS_00064931-protein|Name=TCONS_00064931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1180bp MERQISKDEPMIPSPIPEETHLPPHFYKYRSMERKLSDVSLCNTSGENNERun BLAST on NCBI transcript from alignment at scaffold_427:374940..420787+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064931 ID=TCONS_00064931|Name=TCONS_00064931|organism=Clytia hemisphaerica|type=transcript|length=45848bp|location=Sequence derived from alignment at scaffold_427:374940..420787+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:374940..420787+ >TCONS_00064931 ID=TCONS_00064931|Name=TCONS_00064931|organism=Clytia hemisphaerica|type=CDS|length=77946bp|location=Sequence derived from alignment at scaffold_427:374940..420787+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064931 vs. Swiss-Prot (Human)
Match: VIP1 (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Homo sapiens GN=PPIP5K1 PE=1 SV=1) HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0 Identity = 523/898 (58.24%), Postives = 638/898 (71.05%), Query Frame = 3
Query: 294 KIRVGICAMNKKTYSRPMKEILKRLKRFILLEFIIFTDELVLREPVENWPIVDCLISFYSKGFPLDKAIAYAKLREPLVINDLEIQYQLMDRREVYRLLEDEGLEIPRYAVFNRDDNGNPLDGNTDIEEFDDTIIVNGKTFTKPFVEKPASAEDHNIYIYYPASAGGGCQILFRKIGXXXXXXXXXXXXXXTGSYIYEDFMPTDGTDVKVYTVGEEYAHAEARKSPALDGKVERDRGGKEIRYPVILSAHEKNIAKRVCRTFKQTVCGFDLLRANGKSLVCDVNGFSFVKTSQKYYDDCSQLLADIILQNLAPQLWIPQQLDYPSASPSTLQSEESPDTMSTVQGPGGTMMELRCVIAIVRHGDRTPKQKMKMVVTHQLFLELFKKYKGHEEGRLKIKKPIQLQEILDITRTLLESTDDEP---IHENKNKLAQMKSVLEMYGHFSGINRKVQLKSMNDNRNYDMLTKFKGRNKKSSTSVGRSAEALLLILKWGGELTPMGKKQAEDLGRAFRCVYPGGQGEYGRAPGFGFLRLHSTYRHDLKIYASDEGRVQTTAAAFTKGLLALEGELTPILVSLVKSDKYVTGMLDTPGDEGGTMQ-RVKSRLHDYLHSTEDFNEDSERDLAACGDNSILKAMRKVKNPHECCEKVDELIKALVVKINEKCADPHTNPNKSDLYHDETLSLMKHRWEKIEKDFHSNEG-FDISLIPDIYDCAKYDYLHNQSLKFDHLPELYTYSKSLADIVIPLEYGITKTEKMRISKQICNRFYRKILADLQYNVQQLEETVHRLDPSSWKHYEPRYESAGESRDIATPHRHVRTRLYMTSESHVHSVVAAIKHGALFKDMNDKQCERAIKYLSQTSELNYLTQIVFMQYEDPSADPLSEDRFHIEMFFSPGVK 2972
+I VGICAM KK+ S+PM +IL+RL RF L +I ++++L EPVENWP CLISF+SKGFPLDKA+AY+KLR P +INDL +QY + DRREVYR+L++EG+++PRYAV NRD P + N + E +D + VNG F KPFVEKP SAEDHN+YIYYP+SAGGG Q LFRKIGSRSSVYS ES +R+TGSYIYE+FMPTDGTDVKVYTVG +YAHAEARKSPALDGKVERD GKEIRYPV+L+A EK +A++VC FKQTVCGFDLLRANG S VCDVNGFSFVK S KYYDDC+++L + I++ LAPQ IP + ++E+ P +T GTMMELRCVIAI+RHGDRTPKQKMKM V H F LF+K+ G++ G+LK+K+P QLQE+LDITR LL + EP I E KL Q+KSVLEMYGHFSGINRKVQL K N+ A +LLL+LKWGGELTP G+ QAE+LGRAFRC+YPGGQG+Y PG G LRLHST+RHDLKIYASDEGRVQ TAAAF KGLLALEGELTPILV +VKS + G+LD+ GD + Q RVK+RLH L F + LA S+L +M ++NP + C++V LI+ L +I E+ DP + LYH ETL LM RW K+E+DF G +DIS IPDIYDC KYD HN SL EL SK+LAD+VIP EYGI++ EK+ I+ C RKIL DLQ + +E+V++L P + Y SR + +P RHVRTRLY TSESHVHS+++ ++G L + D Q +RA+ YLS SELNY+TQIV M YED + DPLSE+RFH+E+ FSPGVK
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDP-ARPEECN--LIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSI--------PTEAEDIPIVPTT----SGTMMELRCVIAIIRHGDRTPKQKMKMEVKHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHG--------VKASNEGQDPQRETLAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSAN-MNGLLDSDGDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTRSTSLLNSMTIIQNPVKVCDQVFALIENLTHQIRERMQDPRS--VDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKILLDLQRTHE--DESVNKLHPLCYLRY---------SRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETQDAQWQRALDYLSAISELNYMTQIVIMLYEDNTQDPLSEERFHVELHFSPGVK 914 The following BLAST results are available for this feature:
BLAST of TCONS_00064931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.