TCONS_00064928 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064928
Unique Name	TCONS_00064928
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2506

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_427:245524..249368+

transcript sequence

>TCONS_00064928 ID=TCONS_00064928|Name=TCONS_00064928|organism=Clytia hemisphaerica|type=transcript|length=2506bp
attgtatttttagagGATTTACATCAAGCTGAATACATGAATGATTTGCG
AAATCTTGAACAGATTGGCTTTAACATACAAGAGCTTCACACTTTTCTTG
AGACGGAAGACAATTTCTGGCCACAATTGAAGTCATTGCTTACTTTAGAA
ATTCCAATATTAATCTTTATGAGACCAAGGTGTACTATAAACGTATTTTC
TTTCGCCAGAAGTAAAGCACAAGAAATAAATGATGAAAAGTGAGGGGATT
CCACTGAACGGACATCACAAACAATCGTACGACGTTCCGAAGAGAAGTGG
ATCACACCACAGCACAACCAacatgaagaagaagatgatgaAATTGGCGA
AGGAGAACAAACTGGTGATCGCCATCGTCATTGGAGCAGTGTTGGGGACC
ATCATCGGTATCTCAATCAACTCCCCGATACAACGTCTTCCACAACCTGA
TCGATACACCGCCATCCTTGTTATTGGCTTCCCAGGGGAATTGCTCTTAC
GTGCCCTAAAGATGTTGATCTTACCCCTCATCACCTTTAGTTTGATCGTC
GGCCTTTCCAACTTGAACCAAAATGTTTCCGGAAAAATCGGCGCACGAGC
TGTGACGTATTATCTCTCTACTACTGTACTCGCCGCCATTTTGGGGATCA
TTTTAGTATCGGCCATTCGACCTGGCATCGGAATGGACCCACCAGAATCG
AGCAAGAAAACAGAATTGGTTCGGCCCTTGGATTCTTTCTTCGATATCTT
AAGAAATATGTTTCCTTCAAACATCGTCAAGGCAGCAGTGCAGCAAGACA
AAACAATCATTGTTGTAAAGAAGGAGCTTTCAAACCCGACAAACAAAACA
TTTGATTTCAATACCATGACAACAAACGAAACAGCAGCAATCCTTAAGAA
GTACACGATCCATAAAACAATCGATCCAAACACGGGTGACGTCATCAACT
ACACAACAATTTATGACATCAACAATTACACTATTGGTGAAGGTCTGAAA
CATCCTGGTAAAGCAAACTTCTTGGGCTTGATCATCTTCGCCATAGTGGT
AGGGAAGATTGCAGGAGGGATGGGGAATCGAGCAAAACCTTTCGTTGAAT
TTGTGACAGTGTTTAATGAAATCATCACACAGATAGTCATCTATGTTATG
TGGTGTGCACCATTCGGCATATTGAGTTTGATTGCAGCACAGTTTGCTCA
GATGGAAGACATTGCGAGCACGTTTGAAAGTCTTGCATTGTTCATGGTGA
CTGTTTCACTTGGGGTATTTGCCCATGGATTCATCGTTCTTCCTTTCATC
TTCTGGCTGTTCACCAGAACAAACCCTTTTCGTTACATTCAAGGTTTAAC
TGAAGCATTGTTTACTGCTTTTGGAACTGACTCCAGCGCTGCAACACTAC
CAATTACCATGAGATGTTTAGAGGAGAATTTACACTTGGACCGCAGGATC
ACTAGGTTTATTCTTCCAGTTGGTGCTACGATTAATATGGATGGCACTGC
TCTCTATGAGGCTGTTAGTGCTATTTTCATTGCACAATCAGTGGGCGCTT
CACTCAGCTTTGGTGATTATGTGGCAATCAGCTTCACCTCCATCTTGGCA
TCAGTGGGAGCAGCTGCAATACCACATGCTGGCTTGGTTACCATGTTGAT
TGTCTTGGATACGGTTGGTTTGCCAACAGAAATGGTGGGCATCATCTTTA
CGGTGGATTGGCTGTTGGATCGTTTCCGCACAGTGGTCAATGTGTTGGGT
GATGCTTTTGGAACAGGTATTGTTCAGCATCTATCACAGACCGATCTTAA
AaagagtgaagaagaaaatacagcaaaaattgatcaaatacaAACAGATA
ATGAAAGTCGAATTGATATTTCAGAAGATAATGGACTAAACTAAAATAAT
GTAAAAAGTGAAAGCAtacttcaaaaatgaaaattttaccagatttgaaa
tcttttgaacaTTCGATTTTGTATTTAGTTTTCTGTTGGatggaaaaact
aatgataataCGATGGAGAATGGTGTGCAGGAAACAATGATgagaaataa
tttcaaatattgTCATTCCGATAAACAAGTAATGgtgatttgatttattt
tatagaccagcggccgaggtagtgaattgtgtcacttcgtagggcaccct
tagatcagggcaaatttttttatattatgttcctaatagggtgtagaatt
gaccaaaaaatttgccctttgaatctcctgcagttttcgagtgaatcgac
tTTTAGTTTCTCCTATTAGGAGCAtagtatcaaaaatttgccctgatcta
aggagtgccctacgaaaaccatttttaaggccttttctgaatctcggacg
ctggtctattATATTTAATCAACATATTTAATCAAAAGACTGGTTAATCT
CATTTCTGGTTGTATCATTGGAATctagtattttttaaacttttttagtt
ttaagaaaAGGGGTTTTACAAGGGGGTTGCAATGCAGTGATCACAACTAC
ATAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_427:245524..249368+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064928 ID=TCONS_00064928|Name=TCONS_00064928|organism=Clytia hemisphaerica|type=transcript|length=3845bp|location=Sequence derived from alignment at scaffold_427:245524..249368+ (Clytia hemisphaerica)
attgtatttttagagGATTTACATCAAGCTGAATACATGAATGATTTGCG
AAATCTTGAACAGATTGGCTTTAACATACAAGAGCTTCACACTTTTCTTG
AGACGGAAGACAATTTCTGGCCACAATTGAAGTCATTGCTTACTTTAGAA
ATTCCAATATTAATCTTTATGAGACCAAGGTGTACTATAAACGTATTTTC
TTTCGCCAGAAGTAAAGCACAAGAAATAAATGATGAAAAGTGAGGGGATT
CCACTGAACGGACATCACAAACAATCGTACGACGTTCCGAAGAGAAGTGG
ATCACACCACAGCACAACCAacatgaagaagaagatgatgaAATTGGCGA
AGGAGAACAAACTGGTGATCGCCATCGTCATTGGAGCAGTGTTGGGGACC
ATCATCGGTATCTCAATCAACTCCCCGATACAACGTCTTCCACAACCTGA
TCGATACACCGCCATCCTTGTTATTGGCTTCCCAGGGGAATTGCTCTTAC
GTGCCCTAAAGATGTTGATCTTACCCCTCATCACCTTTAGTTTGATCGTC
GGCCTTTCCAACTTGAACCAAAATGTTTCCGGAAAAATCGGCGCACGAGC
TGTGACGTATTATCTCTCTACTACTGTACTCGCCGCCATTTTGGGGATCA
TTTTAGTATCGGCCATTCGACCTGGCATCGGAATGGACCCACCAGAATCG
AGCAAGAAAACAGAATTGGTTCGGCCCTTGGATTCTTTCTTCGATATCTT
AAGGTAAGAATCGCCATCACAAGAAAGCCTTTCCATTTGCAGAAACCCGA
TCTGATGAGATTCTTGAATCAAATGATGTAAATTATATTAATGAATTCCC
TTCTATCCGCTATTCGAGTACGTAAAGAACTAAAGCAAGCTATAAATACT
GCAAAGAGTAAATGGATTAAAAATGCATGTAATCGCTTGAATGAAGATCC
CAATACTCGGAATCACGGCAATGTTGATGAGCATTTTATATAAGTTAGTA
AAGACTCGAAAAGCTTTGTCcaataaaattaaaactttggtgttgtttat
ttgtttgGACCTTGGTGAGCATCTTTGGTTAAAACAAATGCTTTTTTCAC
CATAGAAATATGTTTCCTTCAAACATCGTCAAGGCAGCAGTGCAGCAAGT
AAGTCATTATCTTTTGCTACACATACCAATTCCAATCTCAACCTCATCTT
TCAGCTAGAAAATTGTGTGATATTGGAGCCAGATTTTGCTCATTGTTCTC
CAGGGGGAGGGGGTGTACTGACATTAATGATCGATGAAGACTTTGTGCTC
GAGTTCAAACATCAGACCCTACCAGGTGAAATTTGGATCTTAACACTATA
TTATACTGTATTATGAGTGTTATTTTTAGGACAAAACAATCATTGTTGTA
AAGAAGGAGCTTTCAAACCCGACAAACAAAACATTTGATTTCAATACCAT
GACAACAAACGAAACAGCAGCAATCCTTAAGAAGTACACGATCCATAAAA
CAATCGATCCAAACACGGGTGACGTCATCAACTACACAACAATTTATGAC
ATCAACAATTACACTATTGGTGAAGGTCTGAAACATCCTGGTAAAGCAAA
CTTCTTGGGCTTGATCATCTTCGCCATAGTGGTAGGGAAGATTGCAGGAG
GGATGGGGAATCGAGCAAAACCTTTCGTTGAATTTGTGACAGTGTTTAAT
GAAATCATCACACAGATAGTCATCTATGTTATGTGGTAATTTTGCCAGTT
ATCTTTTGATCCATCTTCCTGTTGATTCATTTTCATATGCTTAGATCCAT
TAGATTTGAGCGATAGATTCTTTTCTCTAAAGAGGCATTTTTTATGGAAC
ACTATATAAATAGTGAAAAGATAATTCATGCATAGTTAAAGATCGCATTG
ATAATTTCTTAAAACAAGGCCAATGCTACCTTTGTTTGTATTTAAATCGG
CCATTTTCTAGGTGTGCACCATTCGGCATATTGAGTTTGATTGCAGCACA
GTTTGCTCAGATGGAAGACATTGCGAGCACGTTTGAAAGTCTTGCATTGT
TCATGGTGACTGTTTCACTTGGGGTATTTGCCCATGGATTCATCGTTCTT
CCTTTCATCTTCTGGCTGTTCACCAGAACAAACCCTTTTCGTTACATTCA
AGGTTTAACTGAAGCATTGTTTACTGCTTTTGGAACTGACTCCAGGTGAG
ATATTTATTTCACATCCGAACTGTCCTCTTCGATGCGTTTGGCATGTTTT
GATTCACGATCATTGTCAGCAAAGCGCACGCGTTATGTTATCACAGGCTT
TGAGGTTCAATTAGTACCCTGGTGAATTCAAGTAgccttatttttattca
aaaaacaatcaTCGATGttttttactttgattttaCCAGCGCTGCAACAC
TACCAATTACCATGAGATGTTTAGAGGAGAATTTACACTTGGACCGCAGG
ATCACTAGGTTTATTCTTCCAGTTGGTGCTACGATTAATATGGATGGCAC
TGCTCTCTATGAGGCTGTTAGTGCTATTTTCATTGGTGAGTCGATAATAA
TTCCCTTCATATACTGTCTTCGTTTAtcttttaaagcatttaaaaagATT
CACCCATTCATCCACTCCATTACACTTTTAGCACAATCAGTGGGCGCTTC
ACTCAGCTTTGGTGATTATGTGGCAATCAGGTAACAAATATTTCTTCACT
TCTGAAACTCGAAAACCATGAAaccatttctttttaattcatgTCCATTA
TTGAGTGTCATCTAAATTAAACATTTCTTTCGCATAGCTTCACCTCCATC
TTGGCATCAGTGGGAGCAGCTGCAATACCACATGCTGGCTTGGTTACCAT
GTTGATTGTCTTGGATACGGTTGGTTTGCCAACAGAAATGGTGGGCATCA
TCTTTACGGTGGATTGGCTGTTGTAGGTTTATTTTCAACGttctttaaat
tctttaaaGTCCAATTTCTCTACTATATCGATAAGTAGACCGGAAGCACA
AAGCCCCCTCTCTCACCATCTACACTCTGTTTATTCTTCCCTCGTTGTTT
TGCAGGGATCGTTTCCGCACAGTGGTCAATGTGTTGGGTGATGCTTTTGG
AACAGGTATTGTTCAGCATCTATCACAGACCGATCTTAAAaagagtgaag
aagaaaatacagcaaaaattgatcaaatacaAACAGATAATGAAAGTCGA
ATTGATATTTCAGAAGATAATGGACTAAACTAAAATAATGTAAAAAGTGA
AAGCAtacttcaaaaatgaaaattttaccagatttgaaatcttttgaaca
TTCGATTTTGTATTTAGTTTTCTGTTGGatggaaaaactaatgataataC
GATGGAGAATGGTGTGCAGGAAACAATGATgagaaataatttcaaatatt
gTCATTCCGATAAACAAGTAATGgtgatttgatttattttatagaccagc
ggccgaggtagtgaattgtgtcacttcgtagggcacccttagatcagggc
aaatttttttatattatgttcctaatagggtgtagaattgaccaaaaaat
ttgccctttgaatctcctgcagttttcgagtgaatcgactTTTAGTTTCT
CCTATTAGGAGCAtagtatcaaaaatttgccctgatctaaggagtgccct
acgaaaaccatttttaaggccttttctgaatctcggacgctggtctattA
TATTTAATCAACATATTTAATCAAAAGACTGGTTAATCTCATTTCTGGTT
GTATCATTGGAATctagtattttttaaacttttttagttttaagaaaAGG
GGTTTTACAAGGGGGTTGCAATGCAGTGATCACAACTACATAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040721	XLOC_040721	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_427	supercontig	scaffold_427:245524..249368 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.0642	17.7644	1.06874	1.36301	0.842502	2.11952	0.357157	0	7.81756	7.57987	0	2.91298	5.12111	6.47642	12.1952	10.5895	8.45558	10.459	1.1079	0	68.7648	66.4386	75.4009	109.917	78.6188	84.9245	73.7049	55.2375	37.2035	39.7902

Blast

[Close]

BLAST of TCONS_00064928 vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2)

HSP 1 Score: 412.535 bits (1059), Expect = 6.053e-133
Identity = 234/510 (45.88%), Postives = 320/510 (62.75%), Query Frame = 2

Query:  353 ENKLVIAIVIGAVLGTIIGISINSPIQRLPQPDRYTAILVIGFPGELLLRALKMLILPLITFSLIVGLSNLNQNVSGKIGARAVTYYLSTTVLAAILGIILVSAIRPGIGMDPPESS-----KKTELVRPLDSFFDILRNMFPSNIVKAAVQQDKTIIVVKKELSNPTNKTFDFNTMTTNETAAILKKYTIHKTIDPNTGDVINYTTIYDINNYTIGEGLKHPGKANFLGLIIFAIVVGKIAGGMGNRAKPFVEFVTVFNEIITQIVIYVMWCAPFGILSLIAAQFAQMEDIASTFESLALFMVTVSLGVFAHGFIVLPFIFWLFTRTNPFRYIQGLTEALFTAFGTDSSAATLPITMRCLEENLHLDRRITRFILPVGATINMDGTALYEAVSAIFIAQSVGASLSFGDYVAISFTSILASVGAAAIPHAGLVTMLIVLDTVGLPTEMVGIIFTVDWLLDRFRTVVNVLGDAFGTGIVQHLSQTDLKKSEEENTAKIDQIQTDNESRID 1867
            +N L+   V G +LG + G      + RL  P     +++I FPG++L+R LKMLILPLI  SLI GLS L+   SG++G RA+ YY+STT++AA+LG+ILV AI PG   +P         KK + V  LD+F D++RN+FP N+V+A  QQ +T  V KK L  P            N T+A++    +++T+          T + +     I +GL+     N LGLI F I  G   G MG++AK  V+F  + NEI+ ++VI +MW +P GI  LI  +   ++D+      L ++MVTV +G+  HG I LP I+++ TR NPF +  G+ +A  TA GT SSA TLP+T RCLEENL +D+R+TRF+LPVGATINMDGTALYEAV+AIFIAQ  G  L  G  V +S T+ LASVGAA+IP AGLVTML++L  VGLPTE + ++  VDWLLDR RT VNV+GD+FG GIV HLS+++L   + ++    D   T  +S  D
Sbjct:   43 KNLLLTLTVFGVILGAVCG-----GLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPG---NPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQT--VTKKVLVAPPPDE------EANATSAVVS--LLNETV----------TEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEMTKTQSIYD 524

The following BLAST results are available for this feature:

BLAST of TCONS_00064928 vs. Swiss-Prot (Human)

BLAST of TCONS_00064928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EAA2	6.053e-133	45.88	Excitatory amino acid transporter 2 OS=Homo sapien...	[more]

You are here

TCONS_00064928 (transcript) - C. hemisphaerica