TCONS_00064927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064927
Unique NameTCONS_00064927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064927 ID=TCONS_00064927|Name=TCONS_00064927|organism=Clytia hemisphaerica|type=transcript|length=2346bp
ttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCTTTcacaaattca
agatggcggaaaTTCAACTAACTGGCATTAAGGATGTGGATTATGAAGAT
CACGCTGATGAGAAGTCAGCTTTAACCATGGATCAAAATGGAACACAGAA
GAATGGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTGGTGAGTGGGGAC
ACAAGATCGAGTTCATCTTGGCTTCCATTGGTCTGGCTGTTGGTCTTGGC
AATGTTTGGAGATTTCCCTATCTTTGCCAAAAGAATGGAGGAgGTGCCTT
TTTGATTCCTTACTTCATCATGATGGTGATCGAGGGTCTTCCCCTCTTTT
ACATCGAGTTCGCTCTTGGCCAACGCTTCCAACGCAGTGCTATCGGTTGT
TTTCAAAAGATTCACCCTGCTTTGATGGGTATCGGTGTCTCGTGTGTCGT
CATCTCTGTGTTGCTCTGCATTTATTATGTTGCTGTCATCTCGTGGTGTT
TCTACTATCTCTTCATCTCCTTCACAAGCAACTTACCCTTCCAAAAGTCA
AACTGTCCAAAGTATGATGCTTACGTCaacatgacgtcattttgcaatTC
TCACAACTCGAGCACCCTTGACAATTACAACAATACTTGTTCAGAGTCAG
CTAAATATCAAGGAGACTGTTGTCTGAAAGATCCTCAGTTGTACTATTTT
TACCGTAAAGCACTGGATGTGTCACCTGACATTGAAATCGCCGGAGGAGT
CAACGGGAAATTATTCGGCTGTTTGATTTTGTCATGGGTTGTTGTTTATG
CATGTATCGTCAAAGGCGTCAAATCCAGTGGAAAGGCTGTCTACTTCACT
GCGACCTTCCCTTACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCAC
TCTCCCAGGAGCTGAGATTGGATTGAAAGCTCTCTTCACCCCTAAATGGG
AGAAGCTGATGGAGCCAGAAATTTGGATGGATGCTGCAACACAAATGTTT
TTCACCCTGTCTCTTGGATTCGGTGCTCTTGTTTCTTTCGCTTCTTACAT
GCCAAGGAAGAATAACTGTGTTCGTGATGCCTACACTGTTGTCTTGATCA
ATTGTGGAACTTCAATCTTTGCCGCAATCGTTGTCTTTTCCATTCTTGGA
CATCGTCAGCTGATCACTGGCAATCCAGTCGAAAAGGTTGGTGGTGGTCC
AGGGCTTGCCTTCATCACATTTTGCGATGCTTTCCTCCAAATGCCGGTTT
CACCGTTATGGTCTTCTCTCTTCTTTATCATGTTGATTCTGTTGGGAATA
GATTCGGAATTCGGAACATTGGAAGGGGCCATCGCTCCTTTCTATGACAT
GAACTGGATCAAAATGAAGAAGGAATTCTTCACTGCTTTGACAGCCATCT
TGATGATGTTGATTGGGATTGGACTGGTAACGAAATCCGGATTCtacgtt
ttccaaattttcGACGATCATTCCGTTTCCCTTGGCCTTCTCTTCATTGC
TTTCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAAATGATAAatttg
gcAATGATATAGAATACATGACAGGAAAACGACCATACCTCTTTTGGATG
ATCTGTTGGAAATACATCTCGCCGATCGCCATCTTGATTATCTTTATTGC
AAACATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATAAAGTATATGTTG
GTTGTGCTGAACAATACACGAACTTTACATCGCTTGCTCCAGGGAACAAC
GAGCAAATTGCGGAAGTAGCGTACCCAGGGTGGGCGCAATTTATCATTGT
CATCTTCATCACTATCACCATGGTTCCGATCATTATCTACATGGTCATCG
ATCTCGTTCGCAACCCCTCAAAATGGAAGGAGGGTTTCAAAAATAAACTG
ACCAATGTGGTCGATTTGCACCCTGATCCAGTAAGAATGGACCCAAGCAG
AAGAAGAACTCCTCAAGAAATGGAGATGGTCATCATGAAAGAAGACGCTG
CCAATCcttaaacaatgaaatgaaattataGACATTTCCTCCTGCATAGG
TTAAGTGCATTCAAAAGTCCCAAGTGATGGCAACGTCAAACGGAGGGGAA
GCATGGCGCCGCTCTCTCCGATGAGAGGAAAAGAGCTGAGATAAAAGAGA
AGTGAATTTCTAATGTAAGATAATAATGACTCATTATTTTAAAATGGAAG
AAGAGTATTTGTTTAAcgattttatcattattttattaCCTGTTATTATT
GTACACTATTTGGTATGTGTTTTTATAAGAGAATAAACCATTGTATCTAT
TCAACGAAAGACCCGCTTTCTGGCAATTTTACAATCTATGGTGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_427:236494..243357+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064927 ID=TCONS_00064927|Name=TCONS_00064927|organism=Clytia hemisphaerica|type=transcript|length=6864bp|location=Sequence derived from alignment at scaffold_427:236494..243357+ (Clytia hemisphaerica)
ttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCTTTcacaaattca
agatggcggaaaTTCAACTAACTGGCATTAAGGATGTGGATTATGAAGGT
AATATGTTTATCCCTCGACAAacccttttttcttttaaacaaactCTCAG
CAACCAACTGCAAGGTGAAAACATTTCACAAGTCAACATTAATTTCTACT
GAAGTCCTTTCGAGTcaacatgatttttttaggactTTGGCGCTGACGTT
ACCGACTTAAAAAACGAAAGTTATTCAAGAACCTGCTATTTTCCATATTA
AAATAGAGTATCTTTGCAAAAGACGAGGTTTTCCAATGTATTCTTATTTC
AATACTGTATCCAAGGCCGTTCGGTCAATCGACGGTCAATCAACGGTCAA
TCAACGGTCAAATCTACAGTATAAATCATCCTTTGACGCAGTTTTCACTA
AACTTCTTGGTAGAccaaaaaacaatgaaactttccaggAATGTCATTCT
GTAAAAATCGCATGATTAATaatgaaaatgacaaaattatACTTCAATCC
GAAATTTGCGATGTCttgatgcattttgcaaaatgaaaaattttggaaaa
tctcaGCTCATATCATTTTTACCTTAATTCCAGACAAAGGACAGTTTTTA
GATCGAGAGCCCTCCTCCCCGGTAACCTAAAATCAGatcgtgattgtttt
ctgcacaccacactgaagggatgtgtgaaaataAGAACGATCTGACGAAT
AAGATATCTCGAATTTgtgtagactagagtctacaatcatggttgtaata
tttgagaaaaaagggaaatccaccgggaagttttgaaaccataatcaatt
tgtaagtgctctaaagttttaactctgagttttaacaagAGACTTatgat
ttacacgtttttttttattagaacccagtttataagaacattgaggctga
aatgtgtcaaaaaattaagaccagcctcagtttggaaaaaaatgacaaga
aagtacaattttttctcttttcaagcagttttaaccgaacttagggatgg
attttctaaaatcgagagtcaaatattgtccaaattttaccaattttaag
tgctttttattttgcatgatattgtcgattcagagtagtctgaaaaatta
agaactcatttaagaaaatttctaaaaaaataagcacatccaggctcacc
caaattttaggtgttctaataaaaaaaaaaacgtgtaggactttaggatc
tgaggatccaagaGTTAAAACAttgtccaataaggctcataatatagcct
ggaggtctataaacccgagccaaattgaaatatccgattgaatttgagag
atggcccaaaattgactttctcgcccgaactctatatttcgaaaaacgag
aaataagcttaattctcaatagatttcgaccatgattgtacttcCACCTG
AACTTTGCTTgctgatgattttgatggcgctgaGAGCGTTATACAAACAA
AAAGCTTAGAACGGAACAAGTTTCCTTCTTAGACTTCCATACGCGCTTGT
AACGTCTCTTATAAGCAAACAAGCCAGCGAATTTACACAATAACATCTTA
AATGCTTTTTTGACGTCTCAACCAAAAAGAATCGATTTCgcaaaaatact
gtttttcATGGTTTAATGAGTagccattaaaaaaaataatttgcacaCGG
AAGACCTTCAGACATTCGACCTTCTTCATTACAACATAAAAGGAAACCAT
TTCGAAATTCAAGGTGCTTATAAGTTCGTTTCGATCGATTGACATACGTT
TTGATATGTAAATTAGATAGAGTACAGTATTGACTCAATTGATTGCtttt
gaacaaaagaaaatttgctAGTCATCTTTACTTCTCGTTGACTTGTCAAT
GTTTTGATCAAGAAATTTCACATCATAGCAAAACATTCTTCGTGAAAGAC
CTCTTTTGAACTCTCCATAAACGATCATCATCATTTGTATTTAGATCACG
CTGATGAGAAGTCAGCTTTAACCATGGATCAAAATGGAACACAGAAGAAT
GGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTGGTGAGTGGGGACACAA
GATCGAGTTCATCTTGGCTTCCATTGGTCTGGCTGTTGGTCTTGGCAATG
TTTGGAGATTTCCCTATCTTTGCCAAAAGAATGGAGGAggtatttttaac
ttttttttgctcaagaatcttttttttcacattttacaCTGGATTTGCGG
GCCCGTAGAATAACAACTTGGTCTCGCCTAACAGCAAATAAAACAAGGAA
CTTTAATGATGAAACCCTTCTTATCCTCAATTCACAAACTCTTTTAGTGC
GgttttttgagaatttgaaAATGCGTTCTTTTTAGGTGCCTTTTTGATTC
CTTACTTCATCATGATGGTGATCGAGGGTCTTCCCCTCTTTTACATCGAG
TTCGCTCTTGGCCAACGCTTCCAACGCAGTGCTATCGGTTGTTTTCAAAA
GATTCACCCTGCTTTGATGGGTATCGGTGTCTCGTGTGTCGTCATCTCTG
TGTTGCTCTGCATTTATTATGTTGCTGTCATCTCGTGGTGTTTCTACTAT
CTCTTCATCTCCTTCACAAGCAACTTACCCTTCCAAAAGTCAAACTGTCC
AAAGTAAGTGTTTTACTTTTCACTGGCAAAATTTATACGACGGAGTGAAG
CccatttcttaaaaatgatttgtttcattttcgattGACTTTATTTTCAG
GTATGATGCTTACGTCaacatgacgtcattttgcaatTCTCACAACTCGA
GCACCCTTGACAATTACAACAATACTTGTTCAGAGTCAGCTAAATATCAA
GGAGACTGTTGTCTGAAAGATCCTCAGTTGTACTATTTTTACCGTAAAGC
ACTGGATGTGTCACCTGACATTGAAATCGCCGGAGGAGTCAACGGGAAAT
TATTCGGCTGTTTGATTTTGTCATGGGTTGTTGTTTATGCATGTATCGTC
AAAGGCGTCAAATCCAGTGGAAAGGTTCGTCCATCAGCTTACGTTACCTC
TCATTGAAATATATCATGTCTGACTTAGTTTGTTATAAATCGCTATAAAT
TCGATAATCTTGAATTTTTCTCACACTTTAACGTTGACGTCATAAGTTTA
TTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCTTCCCTTACGTCG
TGTTGATCATTNATACTTTTAGGCTGTCTACTTCACTGCGACCTTCCCTT
ACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCACTCTCCCAGGAGCT
GAGATTGGATTGAAAGCTCTCTTCACCCCTAAAGTAAGTAATTATCCCAT
CTTTTTCTTGCACGATCGAAGAAACTTAATCTTTCACTTTGTACGAATGA
AATGAAGACCAAGAtttgatataaaataaatatCTGTCTTGATGGTCagg
aatttcaaatttttcaaattcttttgtttgaagttgTAGCTTCGTAATTG
AGATTAGAGTTTGGATCCatccatagaggtataaagaaagacaggagatg
aatttgtcggtaattggtcgttaaagtcttttgatttcttttatgtaata
aatcaaaagaaattctaggctcgcNTAGTTTGTTATAAATCGCTATAAAT
TCGATAATCTTGAATTTTTCTCACACTTTAACGTTGACGTCATAAGTTTA
TTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCTTCCCTTACGTCG
TGTTGATCATTCTTTTCTTCGTTGGTGTCACTCTCCCAGGAGCTGAGATT
GGATTGAAAGCTCTCTTCACCCCTAAAGTAAGTAATTATCCCATCTTTTT
CTTGCACGATCGAAGAAACTTAATCTTTCACTTTGTACGAATGAAATGAA
GACCAAGATATGATATAAAATAAATATCTGTCTTGATGGTCaggaatttc
aaatttttcaaattctgttgTTTGAAGTTGTAGCTTCGTAATTAAGATTA
GAGTTTGGATCCATCGGGGTGTTTAAGATGTTGGTAAAATTGCAATAAGA
CTGATGATTTATTACTTTCAGTGGGAGAAGCTGATGGAGCCAGAAATTTG
GATGGATGCTGCAACACAAATGTTTTTCACCCTGTCTCTTGGATTCGGTG
CTCTTGTTTCTTTCGCTTCTTACATGCCAAGGAAGAATAACTGTGTTCGT
GATGCCTACACTGTTGTCTTGATCAATTGTGGAACTTCAATCTTTGCCGC
AATCGTTGTCTTTTCCATTCTTGGACATCGTCAGCTGATCACTGGCAATC
CAGTCGAAAAGGTActtattgaatttgaaataaattaacTTGTTCAAAGA
ACTATTTTCGACAAGTGCGAGAACTATTCAAGTGAACTTTTTTTCGTCCT
ATGTAAAAACTTTTATAATAAATAACTAAACAAGCTTTATTTATAAGGTC
CCTTTATCTATCCAATTTATTCTAGGTTGGTGGTGGTCCAGGGCTTGCCT
TCATCACATTTTGCGATGCTTTCCTCCAAATGCCGGTTTCACCGTTATGG
TCTTCTCTCTTCTTTATCATGTTGATTCTGTTGGGAATAGATTCGGAATT
CGGAACATTGGAAGGGGCCATCGCTCCTTTCTATGACATGAACTGGATCA
AAATGAAGAAGGAATTCTTCACTGGTGAGCATCAGCTAATTCACTTTGCT
TTAGTTTTGTCAGTAACCAATATATTTGTCTAGTTTCGCCCGACTAATGA
TAACAACATTGAAATCTCTAATAAATTTTTCAGCTTTGACAGCCATCTTG
ATGATGTTGATTGGGATTGGACTGGTAACGAAATCCGGATTCtacgtttt
ccaaattttcGACGATCATTCCGTTTCCCTTGGCCTTCTCTTCATTGCTT
TCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAAATGATAAGTAAGTT
CTGATTTCTCCAGCATGGAATTTCTTCATCATCAACTGTCAATTCCGATA
CTGATTTTAGCAAACCTAATGGTTACTctctttttctttagatttggcAA
TGATATAGAATACATGACAGGAAAACGACCATACCTCTTTTGGATGATCT
GTTGGAAATACATCTCGCCGATCGCCATCTTGATTATCTTTATTGCAAAC
ATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATAAAGTATATGTTGGTTG
TGCTGAACAATACGTAAGTTCATTTAATTTAGATCACACAACCCTTACGC
CACCATTCAGCGTGTACAATTCACGTGTACAATTAGCTTTCTGCATTAGA
AATATCATTAAATTTACATTGAGGTCTAACTGGATACTTTTTGATACATA
ATAATAGAATATGAATTCCATCGCATTCCTCCAAGTCACATTCTTCCCTT
TATTTTATATGCTAGACCCTTTTTCATTTCAGACGAACTTTACATCGCTT
GCTCCAGGGAACAACGAGCAAATTGCGGAAGTAGCGTACCCAGGGTGGGC
GCAATTTATCATTGTCATCTTCATCACTATCACCATGGTTCCGATCATTA
TCTACATGGTCATCGATCTCGTTCGCAACCCCTCAAAATGGAAGGAGGGT
TTCAAAAATAAACTGACCAATGTGGTCGATTTGCACCCTGATCCAGTAAG
AATGGACCCAAGCAGAAGAAGAACTCCTCAAGAAATGGAGATGGTCATCA
TGAAAGAAGACGCTGCCAATCcttaaacaatgaaatgaaattataGACAT
TTCCTCCTGCATAGGTTAAGTGCATTCAAAAGTCCCAAGTGATGGCAACG
TCAAACGGAGGGGAAGCATGGCACCGCTCTCTCCGATGAGAGGAAAAGAG
CTGAGATAAAAGAGAAGTGAATTTCTAATGTAAGATAATAATGACTCATT
ATTTTAAAATGGAAGAAGAGTATTTGTTTAAcgattttatcattatttta
ttaCCTGTTATTATTGTACACTATTTGGTATGTGTTTTTATAAGAGAATA
AACCATTGTATCTATTCAACGAAAGACCCGCTTTCTGGCAATTTTACAAT
CTNTACAATTCAGCGTGTACAATTCACGTGTACAATTAGCTTTCTGCATT
AGAGATATCATTAAATTTACATTGAGGTCTAACTGGATACTTTTTGATAC
ATAATAATAGAATATGAATTCCATCGCATTCCTTCAAGTCACATTCTTCC
CTTTATTTTATATGCTAGACCCTTTTTCATTTCAGACGAACTTTACATCG
CTTGCTCCAGGGAACAACGAGCAAATTGCGGAAGTAGCGTACCCAGGGTG
GGCGCAATTTATCATTGTCATCTTCATCACTATCACCATGGTTCCGATCA
TTATCTACATGGTCATCGATCTCGTTCGCAACCCCTCAAAATGGAAGGAG
GGTTTCAAAAATAAACTGACCAATGTGGTCGATTTGCACCCTGATCCAGT
AAGAATGGACCCAAGCAGAAGAAGAACTCCTCAAGAAATGGAGATGGTCA
TCATGAAAGAAGACGCTGCCAATCcttaaacaatgaaatgaaattataGA
CATTTCCTCCTGCATAGGTTAAGTGCATTCAAAAGTCCCAAGTGATGGCA
ACGTCAAACGGAGGGGAAGCATGGCGCCGCTCTCTCCGATGAGAGGAAAA
GAGCTGAGATAAAAGAGAAGTGAATTTCTAATGTAAGATAATAATGACTC
ATTATTTTAAAATGGAAGAAGAGTATTTGTTTAAcgattttatcattatt
ttattaCCTGTTATTATTGTACACTATTTGGTATGTGTTTTTATAAGAGA
ATAAACCATTGTATCTATTCAACGAAAGACCCGCTTTCTGGCAATTTTAC
AATCTATGGTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040721XLOC_040721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064927-exon-scaffold_427-1491911889:236494..236591TCONS_00064927-exon-scaffold_427-1491911889:236494..236591Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:236494..236591TCONS_00064927-exon-scaffold_427-1510915933:236494..236591Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:236494..236591TCONS_00064927-exon-scaffold_427-1575043694:236494..236591Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:238488..238682TCONS_00064927-exon-scaffold_427-1491911889:238488..238682Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:238488..238682TCONS_00064927-exon-scaffold_427-1510915933:238488..238682Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:238488..238682TCONS_00064927-exon-scaffold_427-1575043694:238488..238682Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:238879..239146TCONS_00064927-exon-scaffold_427-1491911889:238879..239146Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:238879..239146TCONS_00064927-exon-scaffold_427-1510915933:238879..239146Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:238879..239146TCONS_00064927-exon-scaffold_427-1575043694:238879..239146Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:239244..239517TCONS_00064927-exon-scaffold_427-1491911889:239244..239517Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:239244..239517TCONS_00064927-exon-scaffold_427-1510915933:239244..239517Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:239244..239517TCONS_00064927-exon-scaffold_427-1575043694:239244..239517Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:239716..239735TCONS_00064927-exon-scaffold_427-1491911889:239716..239735Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:239716..239735TCONS_00064927-exon-scaffold_427-1510915933:239716..239735Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:239716..239735TCONS_00064927-exon-scaffold_427-1575043694:239716..239735Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:240230..240320TCONS_00064927-exon-scaffold_427-1491911889:240230..240320Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:240230..240320TCONS_00064927-exon-scaffold_427-1510915933:240230..240320Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:240230..240320TCONS_00064927-exon-scaffold_427-1575043694:240230..240320Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:240565..240804TCONS_00064927-exon-scaffold_427-1491911889:240565..240804Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:240565..240804TCONS_00064927-exon-scaffold_427-1510915933:240565..240804Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:240565..240804TCONS_00064927-exon-scaffold_427-1575043694:240565..240804Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:240969..241167TCONS_00064927-exon-scaffold_427-1491911889:240969..241167Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:240969..241167TCONS_00064927-exon-scaffold_427-1510915933:240969..241167Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:240969..241167TCONS_00064927-exon-scaffold_427-1575043694:240969..241167Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:241277..241436TCONS_00064927-exon-scaffold_427-1491911889:241277..241436Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:241277..241436TCONS_00064927-exon-scaffold_427-1510915933:241277..241436Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:241277..241436TCONS_00064927-exon-scaffold_427-1575043694:241277..241436Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:241535..241706TCONS_00064927-exon-scaffold_427-1491911889:241535..241706Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:241535..241706TCONS_00064927-exon-scaffold_427-1510915933:241535..241706Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:241535..241706TCONS_00064927-exon-scaffold_427-1575043694:241535..241706Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1491911889:242729..243357TCONS_00064927-exon-scaffold_427-1491911889:242729..243357Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1510915933:242729..243357TCONS_00064927-exon-scaffold_427-1510915933:242729..243357Clytia hemisphaericaexon
TCONS_00064927-exon-scaffold_427-1575043694:242729..243357TCONS_00064927-exon-scaffold_427-1575043694:242729..243357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:236494..243357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.45802	10.1236	78.9037	90.7771	9.70933	7.87111	4.63337	4.06452	5.48043	7.91799	1.13652	3.60795	6.37691	9.82823	2.29089	1.50099	8.57904	12.5588	17.3091	11.4756	19.4077	22.133	16.1959	12.0223	2.82211	2.48761	13.1344	13.452	9.60257	8.34733
Blast
[Close]
BLAST of TCONS_00064927 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 382.874 bits (982), Expect = 6.699e-122
Identity = 203/478 (42.47%), Postives = 301/478 (62.97%), Query Frame = 2 
Query:  194 WGHKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGLPLFYIEFALGQRFQRSAIGCFQKIHPALMGIGVSCVVISVLLCIYYVAVISWCFYYLFISFTSNLPFQKSNCPKYDAYVNMTSFCNSHNSSTLDNYNNTCSESAKYQGDCCLKDPQLYYFYRKALDVSPDIEIAGGVNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYVVLIILFFVGVTLPGAEIGLKALFTPKWEKLMEPEIWMDAATQMFFTLSLGFGALVSFASYMPRKNNCVRDAYTVVLINCGTSIFAAIVVFSILGHRQLITGNPVEKVGG-GPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKY 1615
            W  + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++  G+PLF +E +LGQ      +G + K+ P   G+G++  V+S  L IYY+ +ISW  YYL+ SFT+ LP+++ + P        T  C S+ S      N T   SA  +           ++ R    ++  ++  G +   L   L ++W++VY CI KGV  +GK VYF+AT+PY++LIILFF GVTLPGA+ G+    TP + KL + E+W+DAATQ+FF+  LG G+L++  SY    NN  RD+  V  IN  TS+FA  V+FSI+G    +T   +  V   GPGLAF+ + +A  Q+P+SPLW+ LFF ML++LGIDS+F T+EG I    D     ++ ++E F A   I+  LIG+  +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW +
Sbjct:   47 WKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPW------NTDRCFSNYSMV----NTTNMTSAVVE-----------FWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSF 502
The following BLAST results are available for this feature:
BLAST of TCONS_00064927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A16.699e-12242.47Sodium- and chloride-dependent GABA transporter 1 ... [more]
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